jgi.p|Nanoce1779_2|670791, mRNA_4429 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670791
Unique Name	mRNA_4429
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1261
Alignment location	scaffold_10:572518..573974 +

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Properties


Property Name	Value
TranscriptId	670877
Track	FilteredModels2
ProteinId	670791

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:572518..573974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670791	gene_4429	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670791	mRNA_4429-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4429	CDS_4429	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:572518..573974+
coding sequence from alignment at scaffold_10:572518..573974+

mRNA sequence

>mRNA_4429 ID=mRNA_4429|Name=jgi.p|Nanoce1779_2|670791|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
ACAGCACAACCAGGCAGCACCATGGCGACGTCTCAAAGCACGCGGACCCG
GCTTTTGTGCGTACCCGAGGCAGTGGTGGCGTCCAAATTCATTTCCACGG
CCCTTGCGTCGTCGTCTTCAATGCACTTGGGTCAGGTCCTAGCCTTGGCA
CACCCACGCGGAGGCAGCCCAACGCAATACTTGCTGACTCCGTCGGGCCA
CTTCTGCGAGCTTCAGTCGTTTCGACCCTCGGGGAGCAAATATGGGAGCT
GGTTCATTGAGCAAAAAGTGGTCTCAGACGGCCTCCTATACGTGGCTTCC
CCTATGGACCCCAAACTCCTCTTGCTGCCCGTCCTGGAAAAGCACGGGGC
CGCCCACTTCTCGCCCTTAGAGCAGATTTTGGCCGCGGAGGCGGACGGGC
TTTACATGCCTTTGCGGACATGCCAACGCTTGGAGTTGCATAGAATGTGC
GATGTGAATGACCAATTAGGCGACGACATGATTCTCTACCGCCTGAATCC
TGAGAAGGTCTTGACATGGCTTGTCAGCAAGGTGGAACGGACAAAGCGCG
CGCTGGTGATGCTTGAATCTGCAAGAGAAGGGCAGAATAATGGGATTGGC
ATGGGGTTTGCTGCGGGTTTTACCATCCAGACGATGGATAACAGCAGTAC
GAGTGTGGGGGGCACGGAGGACAATGGGGAGAAAACAAGAGCAGCTGCTA
CAGCACGAGAGGCTACACGAGAAGAAATGCGCACCGCTCTCGAGCTTGTC
TGCGACTATTTGACAGACGCTTGGGCAACCAAACTCCAAACCCACTGCGG
ATTCAGCGAGGAGGAAATGAAACACGCAGCCGGCAGCCTAAAACGTTCTG
TCTGGGAAGGTGAAGCTGACGCAGAGCAAGACACGGCCATGGAATTGACG
CAGGGAAAGAGGTTGAAGGCTGTAGAAGGGGTAGGGGGAGGAGCGGTTGC
ACGTGGTGGTGGTGGTGGAGGAGTAGGGGGAGGGAGGTGCCAAAAAATGG
CTGCGATGGGCCCGAGCATTGCACAAAAGAAGCTGGCCAAGACGAATTTA
AAGGGTGTCAAGTCAATTTCCTCCTTCTTTGATAAGAGGTCGTGATGTAG
GTAGAGAGCAGGAGGAGGCGAGAAGCATCGGGAGAGGGGAAAAAGAAAGG
GGAGAGGACGAATGACTGTTGAGAATACAGTAACGGGGTGATTTTGGCCC
GCATACTATACGAGAAGGTGCGCGATAGAAGCGAGAAAAAGGAACAAATA
AATACATATAC

protein sequence of jgi.p|Nanoce1779_2|670791

>mRNA_4429-protein ID=mRNA_4429-protein|Name=jgi.p|Nanoce1779_2|670791|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATSQSTRTRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSP
TQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLL
LLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLG
DDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGF
TIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDA
WATKLQTHCGFSEEEMKHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKA
VEGVGGGAVARGGGGGGVGGGRCQKMAAMGPSIAQKKLAKTNLKGVKSIS
SFFDKRS*

mRNA from alignment at scaffold_10:572518..573974+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4429 ID=mRNA_4429|Name=jgi.p|Nanoce1779_2|670791|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_10:572518..573974+ (Nannochloropsis oceanica)
ACAGCACAACCAGGCAGCACCATGGCGACGTCTCAAAGCACGCGGACCCG
GCTTTTGTGCGTACCCGAGGCAGTGGTGGCGTCCAAATTCATTTCCACGG
CCCTTGCGTCGTCGTCTTCAATGCACTTGGGTCAGGTCCTAGCCTTGGCA
CACCCACGCGGAGGCAGCCCAACGCAATACTTGCTGACTCCGTCGGGCCA
CTTCTGCGAGCTTCAGTCGTTTCGACCCTCGGGGAGCAAATATGGGAGCT
GGTTCATTGAGCAAAAAGTGGTCTCAGACGGCCTCCTATACGTGGCTTCC
CCTATGGACCCCAAACTCCTCTTGCTGCCCGTCCTGGAAAAGCACGGGGC
CGCCCACTTCTCGCCCTTAGAGCAGATTTTGGCCGCGGAGGCGGACGGGC
TTTACATGCCTTTGCGGACATGCCAACGCTTGGAGTTGCATAGAATGTGC
GATGTGAATGACCAATTAGGCGACGACATGATTCTCTACCGCCTGAATCC
TGAGAAGGTCTTGACATGGCTTGTCAGCAAGGTGGAACGGACAAAGCGCG
CGCTGGTGATGCTTGAATCTGCAAGAGAAGGGCAGAATAATGGGATTGGC
ATGGGGTTTGCTGCGGGTTTTACCATCCAGACGATGGATAACAGCAGTAC
GAGTGTGGGGGGCACGGAGGACAATGGGGAGAAAACAAGAGCAGCTGCTA
CAGCACGAGGTACGTCATTTGCGCTGACGTTCGAGAAAAAGCCTGAAGGT
GCAAATAAATAGACCTTGCGCTCCAAAATATCTCTCATCTCCAATGCCCA
TACTTAGCCCCCGTGTCTGTCGTGCTGAATCGAGAAGAGACGCAATTCAA
AAATCTAGAAGTGACCACAAACCACTTACACCTTCCCCTCTCTTTATCTG
TATAGAGGCTACACGAGAAGAAATGCGCACCGCTCTCGAGCTTGTCTGCG
ACTATTTGACAGACGCTTGGGCAACCAAACTCCAAACCCACTGCGGATTC
AGCGAGGAGGAAATGAAACACGCAGCCGGCAGCCTAAAACGTTCTGTCTG
GGAAGGTGAAGCTGACGCAGAGCAAGACACGGCCATGGAATTGACGCAGG
GAAAGAGGTTGAAGGCTGTAGAAGGGGTAGGGGGAGGAGCGGTTGCACGT
GGTGGTGGTGGTGGAGGAGTAGGGGGAGGGAGGTGCCAAAAAATGGCTGC
GATGGGCCCGAGCATTGCACAAAAGAAGCTGGCCAAGACGAATTTAAAGG
GTGTCAAGTCAATTTCCTCCTTCTTTGATAAGAGGTCGTGATGTAGGTAG
AGAGCAGGAGGAGGCGAGAAGCATCGGGAGAGGGGAAAAAGAAAGGGGAG
AGGACGAATGACTGTTGAGAATACAGTAACGGGGTGATTTTGGCCCGCAT
ACTATACGAGAAGGTGCGCGATAGAAGCGAGAAAAAGGAACAAATAAATA
CATATAC

Coding sequence (CDS) from alignment at scaffold_10:572518..573974+

>mRNA_4429 ID=mRNA_4429|Name=jgi.p|Nanoce1779_2|670791|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_10:572518..573974+ (Nannochloropsis oceanica)
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGAGGCTACACGAG
AAGAAATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCT
TGGGCAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAA
ACACGCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACG
CAGAGCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCT
GTAGAAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGG
AGTAGGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTG
CACAAAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCC
TCCTTCTTTGATAAGAGGTCGTGAATGGCGACGTCTCAAAGCACGCGGAC
CCGGCTTTTGTGCGTACCCGAGGCAGTGGTGGCGTCCAAATTCATTTCCA
CGGCCCTTGCGTCGTCGTCTTCAATGCACTTGGGTCAGGTCCTAGCCTTG
GCACACCCACGCGGAGGCAGCCCAACGCAATACTTGCTGACTCCGTCGGG
CCACTTCTGCGAGCTTCAGTCGTTTCGACCCTCGGGGAGCAAATATGGGA
GCTGGTTCATTGAGCAAAAAGTGGTCTCAGACGGCCTCCTATACGTGGCT
TCCCCTATGGACCCCAAACTCCTCTTGCTGCCCGTCCTGGAAAAGCACGG
GGCCGCCCACTTCTCGCCCTTAGAGCAGATTTTGGCCGCGGAGGCGGACG
GGCTTTACATGCCTTTGCGGACATGCCAACGCTTGGAGTTGCATAGAATG
TGCGATGTGAATGACCAATTAGGCGACGACATGATTCTCTACCGCCTGAA
TCCTGAGAAGGTCTTGACATGGCTTGTCAGCAAGGTGGAACGGACAAAGC
GCGCGCTGGTGATGCTTGAATCTGCAAGAGAAGGGCAGAATAATGGGATT
GGCATGGGGTTTGCTGCGGGTTTTACCATCCAGACGATGGATAACAGCAG
TACGAGTGTGGGGGGCACGGAGGACAATGGGGAGAAAACAAGAGCAGCTG
CTACAGCACGAGAGGCTACACGAGAAGAAATGCGCACCGCTCTCGAGCTT
GTCTGCGACTATTTGACAGACGCTTGGGCAACCAAACTCCAAACCCACTG
CGGATTCAGCGAGGAGGAAATGAAACACGCAGCCGGCAGCCTAAAACGTT
CTGTCTGGGAAGGTGAAGCTGACGCAGAGCAAGACACGGCCATGGAATTG
ACGCAGGGAAAGAGGTTGAAGGCTGTAGAAGGGGTAGGGGGAGGAGCGGT
TGCACGTGGTGGTGGTGGTGGAGGAGTAGGGGGAGGGAGGTGCCAAAAAA
TGGCTGCGATGGGCCCGAGCATTGCACAAAAGAAGCTGGCCAAGACGAAT
TTAAAGGGTGTCAAGTCAATTTCCTCCTTCTTTGATAAGAGGTCGTGA

Synonyms

Publications