jgi.p|Nanoce1779_2|589067, mRNA_4427 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589067
Unique Name	mRNA_4427
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2771
Alignment location	scaffold_10:561673..564443 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589153
Track	FilteredModels2
ProteinId	589067

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:561673..564443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589067	gene_4427	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589067	mRNA_4427-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4427	CDS_4427	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:561673..564443+
coding sequence from alignment at scaffold_10:561673..564443+

mRNA sequence

>mRNA_4427 ID=mRNA_4427|Name=jgi.p|Nanoce1779_2|589067|organism=Nannochloropsis oceanica|type=mRNA|length=2771bp
AAAAGATATATTGCGCTTGTATGATGTCTGTTGTGGGTAGTAATGAAAGG
TATCATGGACGTTCCGTGTAAGGACATGGCAAATGCATACCATCAACACC
TCCTCGTACGTCCTGCTTTTTCAACGCCCCTTGGTGCTTTTTGAGGACGA
GCGCGACTTTTGCAGCATGCAACACTCCATGTACACGACAAATGGATGGC
CCGTATTGCCTTTGACATTTTTCTGGCAGTGAGGCAGCGTAATTATTTTT
AATATAGAAGGTGTCGCGATGTACGCTCCTGGCTTCCAGCATGAGCCCCC
CAACGAGACACGGAGTCATTAGGAATCTGACCATGACATACACACATACT
AAACACATTTACACTTATAGATTTCTGCCACGACCCCATATGAAATTCTC
CACATGCCTTTTTATCAGACAAATCCCTTCGCTCGGTCCCTCAGGTTGCT
CGAAATTCCACGGTCATTTTTGCCACTTGCAACGCGAAACCATGACAGTT
CCACGTCTGCCTTCTGCATCACTATGGCAGAAATATCACCTTTCAGCTTT
ATAGACTGGCGTGTCTTGCACTGGTGGCCTCCTTTCCTGCATTCATACGC
CTTAAGCTCTCGTAGTCCATGTGCTAAGGCAGAAAACTTGCGGGGATGGA
CTCGAGCGCCCGCTGCTGCTCTTGTTTTGACTGCAGCACACGCGTGCATA
TCTTGCCTGCTGAACAGGCAGTCCTTAATTTGCCGGGAGGGTATGGCTTG
GCTTACCCTACCCTTGTTTGCAGTGATGCATGACACAATCTACTCGCCTC
AGCCTGCGCTCAATTGCTTTACACTGCTAACTCCGTCTTTGATGCTCTGC
TGATATGTCGCGCGAATTTCATTAAGCTTGATTCAACAGCGTCACCCCAG
TGGTGGTCCAAGCGGCAGGATAAATTGCGTGGCGTGGCAGACTATGTGCG
CTCTGCCCTAAAACTTCTTTACGTGGTCGGGGAGAAAACGTTTTATTTTT
TGTCCGTCTTTGCTATCGACCTCTTTAAGATTGAATTATCAAAATTATGG
TAAGACCTCTCACATCTTGATGGCCTAATTTCATTACCTACACCACTCTC
CAAACACATACAAAAGCAGGAGAAATGGTATCAAATGAAGCAGGCTTTCT
TGTTACAAGGCAAATATGCGGCAGTGGGTCGAAGCCGAATCGGGACACAC
CAATTACAAGGGTTCGGTCGGATGGGGATATACGCTCCTACGTATGGCCG
TTGAAAATGTGGAAGTGTGCTTCTTATCCTATGGTGAGTGGTGAAGAAAA
AGTGCCAACTTTAAAACCTGGGGTGCGCATGGCTATGTTTTAGCCGACTT
CATACATGCACTATTGGACTGCGACGGGGACCATACCTTGGTGGAGCATT
TTCGATCAAAATTCACAAGTATTACGTCATCGCATGCTCGATCCTGGCAC
CCGCTCTTGCCGAGCATGGGGCTGATGTTGGTCACAGACTGTACGTATGT
CGACGAGGATGAGAATGTCCGGGTTAGGCTGGTAATTTAGGTACCTCTGC
ATGTCTCAAAATTTTCGTCGACACAACACAGAACACAGGTCACACAATGT
GAATATGAATGACGATGGAAAAGCGAAAGAAAGTAAGATAAAGTAGCATA
AACAAGTTTTGCAAACTTGACCGTTTGGCTCAGTAATTTCTATATTTAAG
CTGAATGGTTTATTTTTTCTGTTGCTTGCAATCAATGAAAATTAATCCCG
AAAACAACATTATGAATCTCTCTTACCATCGTGACGTGGCAAAGCAGATT
GATGATTCCAGGTTCACGGAGCAATTTTATGTGAATACGCGAGGAGTGTA
TGACCAAAGTGTAAGTCCTTTTGAAAAGCAATATATGAAGAATGAGCCGG
TGTCGTACCGGAATAATATCCCCTCTGAGAATAATCACGTACATCAGGTG
ACTCGCACGACAGATTGCTGCACGCGACCGGGCAAAACGGTCGTGGTTGG
CAGAAAGAGTAAGGATGCGCCTTTGGAAAACGCGACGTATTTCTGGAAGG
AAGTGCAAAGCGTTCCCCATTAAATAAACGCCGAACCGGAACGACCACCC
GCATTGAGTTTAATCAAACGGAAAATTAAATAAACCCTTTTAATTTTATA
TATGTGTATAGCGCGTCACGTATACATGTTATGATGGAGTTGTAGAGCAA
GACTGTGACAGACGTGAAAGATGGATACGATACCACACTGCAAAAAGTGT
CACACTTGTGTGGTAGGCGTGTATTTTATTCATATATATATATAATACCA
TACATACCATACACAACACATATGGTCGAACACGTCTTTTTGTACGGGAC
GCTCCATTCGGAGAAGTTGTGTAGCATATTGGGTGAAGTGACCGTGCCAT
GCGGATGTATTTTAAAAAATCATAAAATTGTTTTTAGTGTATCTCAAAGT
GTATTTCAAGGAAGTAGTGTGGCGACGAACTTGCCCCATGATGGTACAGA
TGTGCTCAGATTTCTGTATGAAATGAGTGAACGGCAGGCAGACTTGCCCG
ATTTATTTATGGGCAGTCGAGTTGGGAGTATGATGAAGAAAAGGGTCGGT
CGTGGACGGACAGAGTACCCATGTCGCGATAATAAACGTGTTACGTAACG
ACGCCAAAGAATCCAGGGCGCATGCCGCGTATCAATATTTGCACGAAAAA
CATGTTCGAGAGGCATACGCCTAGTACAGAAAAGGGGCAGACAATGTCCG
CCCATGAAAGAAATACGAAGC

protein sequence of jgi.p|Nanoce1779_2|589067

>mRNA_4427-protein ID=mRNA_4427-protein|Name=jgi.p|Nanoce1779_2|589067|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MPFYQTNPFARSLRLLEIPRSFLPLATRNHDSSTSAFCITMAEISPFSFI
DWRVLHWWPPFLHSYALSSRSPCAKAENLRGWTRAPAAALVLTAAHACIS
CLLNRQSLICREGMAWLTLPLFAVMHDTIYSPQPALNCFTLLTPSLMLC*

mRNA from alignment at scaffold_10:561673..564443+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4427 ID=mRNA_4427|Name=jgi.p|Nanoce1779_2|589067|organism=Nannochloropsis oceanica|type=mRNA|length=2771bp|location=Sequence derived from alignment at scaffold_10:561673..564443+ (Nannochloropsis oceanica)
AAAAGATATATTGCGCTTGTATGATGTCTGTTGTGGGTAGTAATGAAAGG
TATCATGGACGTTCCGTGTAAGGACATGGCAAATGCATACCATCAACACC
TCCTCGTACGTCCTGCTTTTTCAACGCCCCTTGGTGCTTTTTGAGGACGA
GCGCGACTTTTGCAGCATGCAACACTCCATGTACACGACAAATGGATGGC
CCGTATTGCCTTTGACATTTTTCTGGCAGTGAGGCAGCGTAATTATTTTT
AATATAGAAGGTGTCGCGATGTACGCTCCTGGCTTCCAGCATGAGCCCCC
CAACGAGACACGGAGTCATTAGGAATCTGACCATGACATACACACATACT
AAACACATTTACACTTATAGATTTCTGCCACGACCCCATATGAAATTCTC
CACATGCCTTTTTATCAGACAAATCCCTTCGCTCGGTCCCTCAGGTTGCT
CGAAATTCCACGGTCATTTTTGCCACTTGCAACGCGAAACCATGACAGTT
CCACGTCTGCCTTCTGCATCACTATGGCAGAAATATCACCTTTCAGCTTT
ATAGACTGGCGTGTCTTGCACTGGTGGCCTCCTTTCCTGCATTCATACGC
CTTAAGCTCTCGTAGTCCATGTGCTAAGGCAGAAAACTTGCGGGGATGGA
CTCGAGCGCCCGCTGCTGCTCTTGTTTTGACTGCAGCACACGCGTGCATA
TCTTGCCTGCTGAACAGGCAGTCCTTAATTTGCCGGGAGGGTATGGCTTG
GCTTACCCTACCCTTGTTTGCAGTGATGCATGACACAATCTACTCGCCTC
AGCCTGCGCTCAATTGCTTTACACTGCTAACTCCGTCTTTGATGCTCTGC
TGATATGTCGCGCGAATTTCATTAAGCTTGATTCAACAGCGTCACCCCAG
TGGTGGTCCAAGCGGCAGGATAAATTGCGTGGCGTGGCAGACTATGTGCG
CTCTGCCCTAAAACTTCTTTACGTGGTCGGGGAGAAAACGTTTTATTTTT
TGTCCGTCTTTGCTATCGACCTCTTTAAGATTGAATTATCAAAATTATGG
TAAGACCTCTCACATCTTGATGGCCTAATTTCATTACCTACACCACTCTC
CAAACACATACAAAAGCAGGAGAAATGGTATCAAATGAAGCAGGCTTTCT
TGTTACAAGGCAAATATGCGGCAGTGGGTCGAAGCCGAATCGGGACACAC
CAATTACAAGGGTTCGGTCGGATGGGGATATACGCTCCTACGTATGGCCG
TTGAAAATGTGGAAGTGTGCTTCTTATCCTATGGTGAGTGGTGAAGAAAA
AGTGCCAACTTTAAAACCTGGGGTGCGCATGGCTATGTTTTAGCCGACTT
CATACATGCACTATTGGACTGCGACGGGGACCATACCTTGGTGGAGCATT
TTCGATCAAAATTCACAAGTATTACGTCATCGCATGCTCGATCCTGGCAC
CCGCTCTTGCCGAGCATGGGGCTGATGTTGGTCACAGACTGTACGTATGT
CGACGAGGATGAGAATGTCCGGGTTAGGCTGGTAATTTAGGTACCTCTGC
ATGTCTCAAAATTTTCGTCGACACAACACAGAACACAGGTCACACAATGT
GAATATGAATGACGATGGAAAAGCGAAAGAAAGTAAGATAAAGTAGCATA
AACAAGTTTTGCAAACTTGACCGTTTGGCTCAGTAATTTCTATATTTAAG
CTGAATGGTTTATTTTTTCTGTTGCTTGCAATCAATGAAAATTAATCCCG
AAAACAACATTATGAATCTCTCTTACCATCGTGACGTGGCAAAGCAGATT
GATGATTCCAGGTTCACGGAGCAATTTTATGTGAATACGCGAGGAGTGTA
TGACCAAAGTGTAAGTCCTTTTGAAAAGCAATATATGAAGAATGAGCCGG
TGTCGTACCGGAATAATATCCCCTCTGAGAATAATCACGTACATCAGGTG
ACTCGCACGACAGATTGCTGCACGCGACCGGGCAAAACGGTCGTGGTTGG
CAGAAAGAGTAAGGATGCGCCTTTGGAAAACGCGACGTATTTCTGGAAGG
AAGTGCAAAGCGTTCCCCATTAAATAAACGCCGAACCGGAACGACCACCC
GCATTGAGTTTAATCAAACGGAAAATTAAATAAACCCTTTTAATTTTATA
TATGTGTATAGCGCGTCACGTATACATGTTATGATGGAGTTGTAGAGCAA
GACTGTGACAGACGTGAAAGATGGATACGATACCACACTGCAAAAAGTGT
CACACTTGTGTGGTAGGCGTGTATTTTATTCATATATATATATAATACCA
TACATACCATACACAACACATATGGTCGAACACGTCTTTTTGTACGGGAC
GCTCCATTCGGAGAAGTTGTGTAGCATATTGGGTGAAGTGACCGTGCCAT
GCGGATGTATTTTAAAAAATCATAAAATTGTTTTTAGTGTATCTCAAAGT
GTATTTCAAGGAAGTAGTGTGGCGACGAACTTGCCCCATGATGGTACAGA
TGTGCTCAGATTTCTGTATGAAATGAGTGAACGGCAGGCAGACTTGCCCG
ATTTATTTATGGGCAGTCGAGTTGGGAGTATGATGAAGAAAAGGGTCGGT
CGTGGACGGACAGAGTACCCATGTCGCGATAATAAACGTGTTACGTAACG
ACGCCAAAGAATCCAGGGCGCATGCCGCGTATCAATATTTGCACGAAAAA
CATGTTCGAGAGGCATACGCCTAGTACAGAAAAGGGGCAGACAATGTCCG
CCCATGAAAGAAATACGAAGC

Coding sequence (CDS) from alignment at scaffold_10:561673..564443+

>mRNA_4427 ID=mRNA_4427|Name=jgi.p|Nanoce1779_2|589067|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_10:561673..564443+ (Nannochloropsis oceanica)
ATGCCTTTTTATCAGACAAATCCCTTCGCTCGGTCCCTCAGGTTGCTCGA
AATTCCACGGTCATTTTTGCCACTTGCAACGCGAAACCATGACAGTTCCA
CGTCTGCCTTCTGCATCACTATGGCAGAAATATCACCTTTCAGCTTTATA
GACTGGCGTGTCTTGCACTGGTGGCCTCCTTTCCTGCATTCATACGCCTT
AAGCTCTCGTAGTCCATGTGCTAAGGCAGAAAACTTGCGGGGATGGACTC
GAGCGCCCGCTGCTGCTCTTGTTTTGACTGCAGCACACGCGTGCATATCT
TGCCTGCTGAACAGGCAGTCCTTAATTTGCCGGGAGGGTATGGCTTGGCT
TACCCTACCCTTGTTTGCAGTGATGCATGACACAATCTACTCGCCTCAGC
CTGCGCTCAATTGCTTTACACTGCTAACTCCGTCTTTGATGCTCTGCTGA

Synonyms

Publications