jgi.p|Nanoce1779_2|527776, mRNA_4426 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527776
Unique NamemRNA_4426
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length390
Alignment locationscaffold_10:552868..553257 +

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Properties
Property NameValue
TranscriptId527862
TrackFilteredModels2
ProteinId527776
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:552868..553257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527776gene_4426Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527776mRNA_4426-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4426CDS_4426Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4426 ID=mRNA_4426|Name=jgi.p|Nanoce1779_2|527776|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGACAAGAAGAAAGGTTAGGGTTAGAAGAAGAAACAAATCGCCTCAAGT
AAATCACCAGAAGAAACAAAAAAGAAACAAGTTTTCGCCCTGGAAGAAAG
AAGGAAATCATCAAGGGGAAAAGGAAGAAACCAAATCACCGGAAGGAAAC
AAATATCTCGGACACTTGACGCAATTGGAGTCGAGGATCAATTTATTTGA
GGATTTGGGGAGGCAATTCGTGACCTATGGACATAGGGAGGCGCCTGAGG
CATTGTGTCGAAAAATTGATGAGATCAAGGCAGAGGAGGTAATGAACATT
GCCCGACGGGCAATTTCTAAGCCAGTGTTGATTTCGGGAGTGGGTAACGA
CTTAAAAAATGTGCCAAATTATGATCAGGTCTTAAAATGA
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protein sequence of jgi.p|Nanoce1779_2|527776

>mRNA_4426-protein ID=mRNA_4426-protein|Name=jgi.p|Nanoce1779_2|527776|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MTRRKVRVRRRNKSPQVNHQKKQKRNKFSPWKKEGNHQGEKEETKSPEGN
KYLGHLTQLESRINLFEDLGRQFVTYGHREAPEALCRKIDEIKAEEVMNI
ARRAISKPVLISGVGNDLKNVPNYDQVLK*
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mRNA from alignment at scaffold_10:552868..553257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4426 ID=mRNA_4426|Name=jgi.p|Nanoce1779_2|527776|organism=Nannochloropsis oceanica|type=mRNA|length=390bp|location=Sequence derived from alignment at scaffold_10:552868..553257+ (Nannochloropsis oceanica)
ATGACAAGAAGAAAGGTTAGGGTTAGAAGAAGAAACAAATCGCCTCAAGT
AAATCACCAGAAGAAACAAAAAAGAAACAAGTTTTCGCCCTGGAAGAAAG
AAGGAAATCATCAAGGGGAAAAGGAAGAAACCAAATCACCGGAAGGAAAC
AAATATCTCGGACACTTGACGCAATTGGAGTCGAGGATCAATTTATTTGA
GGATTTGGGGAGGCAATTCGTGACCTATGGACATAGGGAGGCGCCTGAGG
CATTGTGTCGAAAAATTGATGAGATCAAGGCAGAGGAGGTAATGAACATT
GCCCGACGGGCAATTTCTAAGCCAGTGTTGATTTCGGGAGTGGGTAACGA
CTTAAAAAATGTGCCAAATTATGATCAGGTCTTAAAATGA
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Coding sequence (CDS) from alignment at scaffold_10:552868..553257+

>mRNA_4426 ID=mRNA_4426|Name=jgi.p|Nanoce1779_2|527776|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_10:552868..553257+ (Nannochloropsis oceanica)
ATGACAAGAAGAAAGGTTAGGGTTAGAAGAAGAAACAAATCGCCTCAAGT
AAATCACCAGAAGAAACAAAAAAGAAACAAGTTTTCGCCCTGGAAGAAAG
AAGGAAATCATCAAGGGGAAAAGGAAGAAACCAAATCACCGGAAGGAAAC
AAATATCTCGGACACTTGACGCAATTGGAGTCGAGGATCAATTTATTTGA
GGATTTGGGGAGGCAATTCGTGACCTATGGACATAGGGAGGCGCCTGAGG
CATTGTGTCGAAAAATTGATGAGATCAAGGCAGAGGAGGTAATGAACATT
GCCCGACGGGCAATTTCTAAGCCAGTGTTGATTTCGGGAGTGGGTAACGA
CTTAAAAAATGTGCCAAATTATGATCAGGTCTTAAAATGA
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Synonyms
Publications