jgi.p|Nanoce1779_2|589060, mRNA_4425 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589060
Unique Name	mRNA_4425
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3049
Alignment location	scaffold_10:548996..552044 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589146
Track	FilteredModels2
ProteinId	589060

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:548996..552044 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589060	gene_4425	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589060	mRNA_4425-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4425	CDS_4425	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:548996..552044+
coding sequence from alignment at scaffold_10:548996..552044+

mRNA sequence

>mRNA_4425 ID=mRNA_4425|Name=jgi.p|Nanoce1779_2|589060|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp
CTCAAGAGGGGGGCAAGACCTGGCTCCCAGCCAACGTCGCTACCACCGCA
GCGTACCCTTTATACTGTGATTGTGCGAAAGATGTGCAGGATGGAACTTG
TGAATGTGAGGAAGAGCACCTCAGGTGAATTCCCAGGAACGGGAAGGATG
ACCATATGATGGAGGCGGGGTGAGGAGGTCAAAACGAGTGAAGTCATAAC
ATTTCCTTACGAACATTCACCCTACAGGTATGCCAACAGCTCCATCAGGC
TCAAGAAAAGGCAGCCTTGGGTCCCTGGTGGCGTTGCTCCGCACCCGTAG
AATCGTACAGCCCCACCAGCAGCACCACCAGCAGCAGCGTCGAACCCCCC
TCAACACCCCAAGTACTCTCACCACCAGTACCTGTTGCACCCTGTTCCAA
TGTACACCTCTCGTTCAACCATACCGGCGCTTCTCAGCACCATCCTTGCT
ACCACTCAAAGCAGCGGCTCCATCGTCGTCGTCCCCGTCCCGCCTGTCCT
CCTTTTCATCGCCTCCCGCCTCCACTTCCTCCGGACGCACCTCACCCAGC
ACACATTTTGCCAGCATCACTGCTGCGCCGCGTGTTCCGACCGTCGAGCT
GGAGAATGCACGAATCAATTCCATGCGACGTGAAGGTCATTACATTGAGG
TGGTGGAGGCAGTCGTTGAGAAATGGCGGGCCGCGGCGCCGCCAGATGCG
TATAGCTACTCTCTTGCAATGAATGCGTGTGCCCAAATGGGTGACTATCA
ACGATCGTGGAAGCTTTTAAAGCGAGCTGAAGCTGTCCACAGCATTCCTC
CCACTGATTGGATGTGGGCTGCCCTACTTAAGGCCTGTGCACGGGCCCGT
CGTCTAGACGAGGCGCTGCGGGTCGTGGCAGATCTAGAGGGAAGGGGCGT
GCGGCTGAATTCGTTCATGATAAATACGTTGATGGACGCACATGCCCGCG
CCGGTGATTGGCAAGGCACCTTGCATCTGCTCGAGGCGCACAAGCCGGAC
TTATTGCAACGGTCTAGAGGAGGGGTTCTGGCGGTCGAGAGGAAGACCTT
GACAATTGCTTACACCATAGCAATAACAGCGTTGGGCCGCGGTCGACAGT
GGCGTCGAGCGCTTGAAATGCTGTACGTAGATATGCCACGGGATGGAGTA
ACTCCGGACGTGGTTGTGTATGGAAGTCTGATGCACGCTTGTGGAAGGGC
ACGACAGTGGACAGAAGTGGTCCGCCTATTTCGTCACATGAAAGACACGG
CCAAGCTATCTCCCAATCTCATCGTGTGTAACTCTGCTCTGCAAGCTTAT
TACTGGAGCGACGCCGAGCACTGGCGGGAGGCCTTGTCTCTACTGAAAGA
GATGGAAAAGGGGAAGTATCCCCAAGCACGACCAAATCATGAAACGTACC
GGGTCGTCTTTCACGTCCTTGGGAAATTCGCGAGTGCCTCCGAGGCTCGG
ACATTCTACGATAGCCTCCCTCCCTCTATCCCCCCGTCGGCAAAGATAGC
AGCAGAGGTCTTGCTAGCATATGCCAATGCTGATGACGGTGCAGGGGCTC
TTGCCTTCCTTCGGCACCTTCAGCATGCTGGTCCTTCCCCTGACGGACTC
TGTTTTTCACGGGCGGTCTTGGCATGTGGGAGGGCTGGAATGGTTGAGGA
CGCAAAAGAATTACTGCACGAGATGCAAAGTCGAGATATGCTCGGGCACT
CGCGATCGGCAGGTATGGTTGAGAGGCTGTCACAGGAGGAGGCATGGGAG
GAAGCGGCTTCCCTGTTTTCGGCTATTACCGAAACGTTTGCCTCGACTCC
TGATGTAACCCCGGGCCCTGTAGCGCTGAACACTGGTTTGCGCGTCTTCT
GTAGTGTGGGGGATTGGGAGGGGATGGAGTGCTTGATGAGGCAGATGGCC
GCCTCTGGCATTCAGCCGACGGAGTCGAATCGTGCGGCGGCTTTAGAGGC
CGTGGGTAGTGCGGGTCAGTGGCCCGTGTCGACGTTTTTGTTGGAGGAAG
CGGTGTTGTTACAGTATAGAAACGTAGGGACTAGTGGTTTTGCGGCATGG
GCGCAGGGGGTGCCAGATAAAGTTTTGACGGTGTTTGGCCCGGCTATGTA
TGGGCGGTTGTACCGGGAAGGGTATGTGAGTCATGGTCATAAAGAGGATG
GGGAAGATGGAGAAGTGCAGGTGGTGGATTTTCATGGGTTTGGGAGTCGG
CAGAGTGTGTGTGCGGTATTGGCGTTGTTGCAGGACATGGAGGCGGCTCT
GACGGCGCAGAAGGAGGAGATGAAGGCGCATGGACGAAGGAGCACCACCA
CCACCACCGATGTGATTACCAGCGATATGGAGAAGAGTAAGGACAGGACG
GAGGTGGCGACAGGCGTGGCGATATCTGATGGCACATCAAGCAATGCGTT
CAGCACCGCTACCGTCGTTTCGACGAAGACATGCTCAATCCGGGGTCTGG
TCATGGTTGTAGGGCGGGGCAAGAACAGTCCGACGGGCGCGAGCATCTTG
GCACCCTACCTTGTCCGTGCGCTTGCTAACCCCACCTTCTTTGTCCCTCC
CCTCGTGGCGCGACAGATGCCTAACAATCCCGGTCGCATTGTCCTAGCGA
AGCAGGAGGTTAGCAGATACATAAAAGCACAGCTGAAAGGAGAAGGTAGA
TTATCGTGATGATGAAAAAAATAGTCTAGAGATTCGAGATAACAAAAATT
GATATAGAGATAAGGGAAAGGAGAAGGAATTGAGATGCGTGTCTTATCTT
AGGTCGTTACGAAGCATTGCACAATTGACACACTGTTGCATTCATCATTT
AAGAAACAAGCTCGCGCACACCCTGGATCGGGGAGTCGTAACCTGTGTTT
TGATATGGTTTTGCTTGAAAAACTAAAAGGGAGGCGTCTGAGGCATTATT
TCGAAAGATTGATGAGGTCGAGGCAAAGGACGTGATGAAGATGGGCTATT
TCTAAGTCAGCGTCAATTTCCGCTGTGGGTAATGGCCTGGGAATAAATGT
GCCAAAGTATGCTCAGGTCTTGCAATGGTTTACACAATCAAAGGAAGAG

protein sequence of jgi.p|Nanoce1779_2|589060

>mRNA_4425-protein ID=mRNA_4425-protein|Name=jgi.p|Nanoce1779_2|589060|organism=Nannochloropsis oceanica|type=polypeptide|length=810bp
MPTAPSGSRKGSLGSLVALLRTRRIVQPHQQHHQQQRRTPLNTPSTLTTS
TCCTLFQCTPLVQPYRRFSAPSLLPLKAAAPSSSSPSRLSSFSSPPASTS
SGRTSPSTHFASITAAPRVPTVELENARINSMRREGHYIEVVEAVVEKWR
AAAPPDAYSYSLAMNACAQMGDYQRSWKLLKRAEAVHSIPPTDWMWAALL
KACARARRLDEALRVVADLEGRGVRLNSFMINTLMDAHARAGDWQGTLHL
LEAHKPDLLQRSRGGVLAVERKTLTIAYTIAITALGRGRQWRRALEMLYV
DMPRDGVTPDVVVYGSLMHACGRARQWTEVVRLFRHMKDTAKLSPNLIVC
NSALQAYYWSDAEHWREALSLLKEMEKGKYPQARPNHETYRVVFHVLGKF
ASASEARTFYDSLPPSIPPSAKIAAEVLLAYANADDGAGALAFLRHLQHA
GPSPDGLCFSRAVLACGRAGMVEDAKELLHEMQSRDMLGHSRSAGMVERL
SQEEAWEEAASLFSAITETFASTPDVTPGPVALNTGLRVFCSVGDWEGME
CLMRQMAASGIQPTESNRAAALEAVGSAGQWPVSTFLLEEAVLLQYRNVG
TSGFAAWAQGVPDKVLTVFGPAMYGRLYREGYVSHGHKEDGEDGEVQVVD
FHGFGSRQSVCAVLALLQDMEAALTAQKEEMKAHGRRSTTTTTDVITSDM
EKSKDRTEVATGVAISDGTSSNAFSTATVVSTKTCSIRGLVMVVGRGKNS
PTGASILAPYLVRALANPTFFVPPLVARQMPNNPGRIVLAKQEVSRYIKA
QLKGEGRLS*

mRNA from alignment at scaffold_10:548996..552044+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4425 ID=mRNA_4425|Name=jgi.p|Nanoce1779_2|589060|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp|location=Sequence derived from alignment at scaffold_10:548996..552044+ (Nannochloropsis oceanica)
CTCAAGAGGGGGGCAAGACCTGGCTCCCAGCCAACGTCGCTACCACCGCA
GCGTACCCTTTATACTGTGATTGTGCGAAAGATGTGCAGGATGGAACTTG
TGAATGTGAGGAAGAGCACCTCAGGTGAATTCCCAGGAACGGGAAGGATG
ACCATATGATGGAGGCGGGGTGAGGAGGTCAAAACGAGTGAAGTCATAAC
ATTTCCTTACGAACATTCACCCTACAGGTATGCCAACAGCTCCATCAGGC
TCAAGAAAAGGCAGCCTTGGGTCCCTGGTGGCGTTGCTCCGCACCCGTAG
AATCGTACAGCCCCACCAGCAGCACCACCAGCAGCAGCGTCGAACCCCCC
TCAACACCCCAAGTACTCTCACCACCAGTACCTGTTGCACCCTGTTCCAA
TGTACACCTCTCGTTCAACCATACCGGCGCTTCTCAGCACCATCCTTGCT
ACCACTCAAAGCAGCGGCTCCATCGTCGTCGTCCCCGTCCCGCCTGTCCT
CCTTTTCATCGCCTCCCGCCTCCACTTCCTCCGGACGCACCTCACCCAGC
ACACATTTTGCCAGCATCACTGCTGCGCCGCGTGTTCCGACCGTCGAGCT
GGAGAATGCACGAATCAATTCCATGCGACGTGAAGGTCATTACATTGAGG
TGGTGGAGGCAGTCGTTGAGAAATGGCGGGCCGCGGCGCCGCCAGATGCG
TATAGCTACTCTCTTGCAATGAATGCGTGTGCCCAAATGGGTGACTATCA
ACGATCGTGGAAGCTTTTAAAGCGAGCTGAAGCTGTCCACAGCATTCCTC
CCACTGATTGGATGTGGGCTGCCCTACTTAAGGCCTGTGCACGGGCCCGT
CGTCTAGACGAGGCGCTGCGGGTCGTGGCAGATCTAGAGGGAAGGGGCGT
GCGGCTGAATTCGTTCATGATAAATACGTTGATGGACGCACATGCCCGCG
CCGGTGATTGGCAAGGCACCTTGCATCTGCTCGAGGCGCACAAGCCGGAC
TTATTGCAACGGTCTAGAGGAGGGGTTCTGGCGGTCGAGAGGAAGACCTT
GACAATTGCTTACACCATAGCAATAACAGCGTTGGGCCGCGGTCGACAGT
GGCGTCGAGCGCTTGAAATGCTGTACGTAGATATGCCACGGGATGGAGTA
ACTCCGGACGTGGTTGTGTATGGAAGTCTGATGCACGCTTGTGGAAGGGC
ACGACAGTGGACAGAAGTGGTCCGCCTATTTCGTCACATGAAAGACACGG
CCAAGCTATCTCCCAATCTCATCGTGTGTAACTCTGCTCTGCAAGCTTAT
TACTGGAGCGACGCCGAGCACTGGCGGGAGGCCTTGTCTCTACTGAAAGA
GATGGAAAAGGGGAAGTATCCCCAAGCACGACCAAATCATGAAACGTACC
GGGTCGTCTTTCACGTCCTTGGGAAATTCGCGAGTGCCTCCGAGGCTCGG
ACATTCTACGATAGCCTCCCTCCCTCTATCCCCCCGTCGGCAAAGATAGC
AGCAGAGGTCTTGCTAGCATATGCCAATGCTGATGACGGTGCAGGGGCTC
TTGCCTTCCTTCGGCACCTTCAGCATGCTGGTCCTTCCCCTGACGGACTC
TGTTTTTCACGGGCGGTCTTGGCATGTGGGAGGGCTGGAATGGTTGAGGA
CGCAAAAGAATTACTGCACGAGATGCAAAGTCGAGATATGCTCGGGCACT
CGCGATCGGCAGGTATGGTTGAGAGGCTGTCACAGGAGGAGGCATGGGAG
GAAGCGGCTTCCCTGTTTTCGGCTATTACCGAAACGTTTGCCTCGACTCC
TGATGTAACCCCGGGCCCTGTAGCGCTGAACACTGGTTTGCGCGTCTTCT
GTAGTGTGGGGGATTGGGAGGGGATGGAGTGCTTGATGAGGCAGATGGCC
GCCTCTGGCATTCAGCCGACGGAGTCGAATCGTGCGGCGGCTTTAGAGGC
CGTGGGTAGTGCGGGTCAGTGGCCCGTGTCGACGTTTTTGTTGGAGGAAG
CGGTGTTGTTACAGTATAGAAACGTAGGGACTAGTGGTTTTGCGGCATGG
GCGCAGGGGGTGCCAGATAAAGTTTTGACGGTGTTTGGCCCGGCTATGTA
TGGGCGGTTGTACCGGGAAGGGTATGTGAGTCATGGTCATAAAGAGGATG
GGGAAGATGGAGAAGTGCAGGTGGTGGATTTTCATGGGTTTGGGAGTCGG
CAGAGTGTGTGTGCGGTATTGGCGTTGTTGCAGGACATGGAGGCGGCTCT
GACGGCGCAGAAGGAGGAGATGAAGGCGCATGGACGAAGGAGCACCACCA
CCACCACCGATGTGATTACCAGCGATATGGAGAAGAGTAAGGACAGGACG
GAGGTGGCGACAGGCGTGGCGATATCTGATGGCACATCAAGCAATGCGTT
CAGCACCGCTACCGTCGTTTCGACGAAGACATGCTCAATCCGGGGTCTGG
TCATGGTTGTAGGGCGGGGCAAGAACAGTCCGACGGGCGCGAGCATCTTG
GCACCCTACCTTGTCCGTGCGCTTGCTAACCCCACCTTCTTTGTCCCTCC
CCTCGTGGCGCGACAGATGCCTAACAATCCCGGTCGCATTGTCCTAGCGA
AGCAGGAGGTTAGCAGATACATAAAAGCACAGCTGAAAGGAGAAGGTAGA
TTATCGTGATGATGAAAAAAATAGTCTAGAGATTCGAGATAACAAAAATT
GATATAGAGATAAGGGAAAGGAGAAGGAATTGAGATGCGTGTCTTATCTT
AGGTCGTTACGAAGCATTGCACAATTGACACACTGTTGCATTCATCATTT
AAGAAACAAGCTCGCGCACACCCTGGATCGGGGAGTCGTAACCTGTGTTT
TGATATGGTTTTGCTTGAAAAACTAAAAGGGAGGCGTCTGAGGCATTATT
TCGAAAGATTGATGAGGTCGAGGCAAAGGACGTGATGAAGATGGGCTATT
TCTAAGTCAGCGTCAATTTCCGCTGTGGGTAATGGCCTGGGAATAAATGT
GCCAAAGTATGCTCAGGTCTTGCAATGGTTTACACAATCAAAGGAAGAG

Coding sequence (CDS) from alignment at scaffold_10:548996..552044+

>mRNA_4425 ID=mRNA_4425|Name=jgi.p|Nanoce1779_2|589060|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_10:548996..552044+ (Nannochloropsis oceanica)
ATGCCAACAGCTCCATCAGGCTCAAGAAAAGGCAGCCTTGGGTCCCTGGT
GGCGTTGCTCCGCACCCGTAGAATCGTACAGCCCCACCAGCAGCACCACC
AGCAGCAGCGTCGAACCCCCCTCAACACCCCAAGTACTCTCACCACCAGT
ACCTGTTGCACCCTGTTCCAATGTACACCTCTCGTTCAACCATACCGGCG
CTTCTCAGCACCATCCTTGCTACCACTCAAAGCAGCGGCTCCATCGTCGT
CGTCCCCGTCCCGCCTGTCCTCCTTTTCATCGCCTCCCGCCTCCACTTCC
TCCGGACGCACCTCACCCAGCACACATTTTGCCAGCATCACTGCTGCGCC
GCGTGTTCCGACCGTCGAGCTGGAGAATGCACGAATCAATTCCATGCGAC
GTGAAGGTCATTACATTGAGGTGGTGGAGGCAGTCGTTGAGAAATGGCGG
GCCGCGGCGCCGCCAGATGCGTATAGCTACTCTCTTGCAATGAATGCGTG
TGCCCAAATGGGTGACTATCAACGATCGTGGAAGCTTTTAAAGCGAGCTG
AAGCTGTCCACAGCATTCCTCCCACTGATTGGATGTGGGCTGCCCTACTT
AAGGCCTGTGCACGGGCCCGTCGTCTAGACGAGGCGCTGCGGGTCGTGGC
AGATCTAGAGGGAAGGGGCGTGCGGCTGAATTCGTTCATGATAAATACGT
TGATGGACGCACATGCCCGCGCCGGTGATTGGCAAGGCACCTTGCATCTG
CTCGAGGCGCACAAGCCGGACTTATTGCAACGGTCTAGAGGAGGGGTTCT
GGCGGTCGAGAGGAAGACCTTGACAATTGCTTACACCATAGCAATAACAG
CGTTGGGCCGCGGTCGACAGTGGCGTCGAGCGCTTGAAATGCTGTACGTA
GATATGCCACGGGATGGAGTAACTCCGGACGTGGTTGTGTATGGAAGTCT
GATGCACGCTTGTGGAAGGGCACGACAGTGGACAGAAGTGGTCCGCCTAT
TTCGTCACATGAAAGACACGGCCAAGCTATCTCCCAATCTCATCGTGTGT
AACTCTGCTCTGCAAGCTTATTACTGGAGCGACGCCGAGCACTGGCGGGA
GGCCTTGTCTCTACTGAAAGAGATGGAAAAGGGGAAGTATCCCCAAGCAC
GACCAAATCATGAAACGTACCGGGTCGTCTTTCACGTCCTTGGGAAATTC
GCGAGTGCCTCCGAGGCTCGGACATTCTACGATAGCCTCCCTCCCTCTAT
CCCCCCGTCGGCAAAGATAGCAGCAGAGGTCTTGCTAGCATATGCCAATG
CTGATGACGGTGCAGGGGCTCTTGCCTTCCTTCGGCACCTTCAGCATGCT
GGTCCTTCCCCTGACGGACTCTGTTTTTCACGGGCGGTCTTGGCATGTGG
GAGGGCTGGAATGGTTGAGGACGCAAAAGAATTACTGCACGAGATGCAAA
GTCGAGATATGCTCGGGCACTCGCGATCGGCAGGTATGGTTGAGAGGCTG
TCACAGGAGGAGGCATGGGAGGAAGCGGCTTCCCTGTTTTCGGCTATTAC
CGAAACGTTTGCCTCGACTCCTGATGTAACCCCGGGCCCTGTAGCGCTGA
ACACTGGTTTGCGCGTCTTCTGTAGTGTGGGGGATTGGGAGGGGATGGAG
TGCTTGATGAGGCAGATGGCCGCCTCTGGCATTCAGCCGACGGAGTCGAA
TCGTGCGGCGGCTTTAGAGGCCGTGGGTAGTGCGGGTCAGTGGCCCGTGT
CGACGTTTTTGTTGGAGGAAGCGGTGTTGTTACAGTATAGAAACGTAGGG
ACTAGTGGTTTTGCGGCATGGGCGCAGGGGGTGCCAGATAAAGTTTTGAC
GGTGTTTGGCCCGGCTATGTATGGGCGGTTGTACCGGGAAGGGTATGTGA
GTCATGGTCATAAAGAGGATGGGGAAGATGGAGAAGTGCAGGTGGTGGAT
TTTCATGGGTTTGGGAGTCGGCAGAGTGTGTGTGCGGTATTGGCGTTGTT
GCAGGACATGGAGGCGGCTCTGACGGCGCAGAAGGAGGAGATGAAGGCGC
ATGGACGAAGGAGCACCACCACCACCACCGATGTGATTACCAGCGATATG
GAGAAGAGTAAGGACAGGACGGAGGTGGCGACAGGCGTGGCGATATCTGA
TGGCACATCAAGCAATGCGTTCAGCACCGCTACCGTCGTTTCGACGAAGA
CATGCTCAATCCGGGGTCTGGTCATGGTTGTAGGGCGGGGCAAGAACAGT
CCGACGGGCGCGAGCATCTTGGCACCCTACCTTGTCCGTGCGCTTGCTAA
CCCCACCTTCTTTGTCCCTCCCCTCGTGGCGCGACAGATGCCTAACAATC
CCGGTCGCATTGTCCTAGCGAAGCAGGAGGTTAGCAGATACATAAAAGCA
CAGCTGAAAGGAGAAGGTAGATTATCGTGA

Synonyms

Publications