jgi.p|Nanoce1779_2|589056, mRNA_4423 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589056
Unique NamemRNA_4423
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1514
Alignment locationscaffold_10:545298..546961 -

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Properties
Property NameValue
TranscriptId589142
TrackFilteredModels2
ProteinId589056
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:545298..546961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589056gene_4423Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589056mRNA_4423-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4423CDS_4423Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4423 ID=mRNA_4423|Name=jgi.p|Nanoce1779_2|589056|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp
AGAACGATAGTTACTAGTAGCATCAGTAGCAATAGCAGCAGCCGGAGCGA
TACCAATTACCGCCATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTGTG
GTTGCCGCATCGAGCGCACGCTCTTCCTCTACACGCCTCTCGCCAGTCCT
CCATCTGCCGCGCCGGCACCTTACCGCACACCACAAAAAGGGTGGCACAG
AAAGGTTGGGGGACTTCAAATCCCCCATTGTCACACAGTTGTGGTCGCGA
CGCTCCACGGCGAAGGAGTTGGAGATGGATTCGAGTCATCCAGGCGCGCC
CATTAGAAGAAAGCCGAGTGAGTCACGCACCACCGTTACATACGCATTTA
CGAAGGACCCCTTCCTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCTTC
CGGAAGGGCAAGCTTTTGGAGGACATGGATGCACTCGCTGGAAACATTGC
ATTTAAGCATTGTGAGAAGGATGATAAGGTCCCCTTGTTGGTGACAGCAA
GCGTGGACAGGATTCGGCTCTCAAGCAACCCTACGCTGGACCGTGACATG
GAAATGTCCGGTCATGTCGTATGGACAGGAAAATCAAGCATGCAGATCGA
TTTGGAAGTCCGGGCGTTGCCGGACACTCGGCCCTGGATCAACGCGTCAT
TTACGTTCGTCGCGCGGGCACCCACTACTGGTAAGGCGACTGCGATCAAT
CGCTTGGAGCCCGAGACGGAGATGGAGAAGACACTATTTGAGGCAGTCGA
GCTAAAGAACCAGCGACGCAAGGCTTTGCGCAAGGTGGCGGAGCATACAG
GGAGTAAGACTGTGGGGCAGCATCCACCGGATCACGTGGGGGAGTTCGAT
AGTGAGGCGATGATTAAATTGCTGCTGAAGCAGGCCCGTCCTTTGCTGGA
GATGCCTTGCTTGGCGGACCCGACGTGCGTGTTGGTGGATAGCACTCGTG
CATCCAACTCGACAATTATGCAACCCCAGCAACGGAATATGCTTAATCGC
GTGTTTGGGGGTTTCCTAATGCGACGAGCCTATGAGATTGCGTTCTCTAC
GTGCTATCTGTTCGCTGGGGCTCGGCCCGAATTTTACCAGGTGGCTCACG
TGGACTTTCTATCGCCCGTGGATGTGGGAGATTTGATGCGTTTTGATTCC
GCGGTGCTCTACACGCACACAGGGCTAGAGACCGGCTCGCCCCATGTGCA
CGTTCAGGTGGTGGCATCAATTTGTCGGCCAGAGAGAGTGCAGAGTTCCA
TAAGCAATACCTTTAATTTTATTTTTCGTGTGCCAAGCAAGGCGACGGTG
CGGAAGGTGTTGCCGGCGAATTTGGACCAGGCAAAGCGGATGATTGATCG
GATGACCGCTGACCTTGAGGACGAGTGAGGGAGCGAAGAAGGGAGGGGGG
CAGAAAGTGAAGATATGGATAGAGACGAAAGGGATGTAGATAGTCAAGGG
TGCACCAGGAATGGATGGCCAAAGAAACGTATCGTCAGTTTGAGCAGCGC
TTTTTGTGTCTTCA
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protein sequence of jgi.p|Nanoce1779_2|589056

>mRNA_4423-protein ID=mRNA_4423-protein|Name=jgi.p|Nanoce1779_2|589056|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MRRSSATVVSSVVAASSARSSSTRLSPVLHLPRRHLTAHHKKGGTERLGD
FKSPIVTQLWSRRSTAKELEMDSSHPGAPIRRKPSESRTTVTYAFTKDPF
LCQSYENPWGFFRKGKLLEDMDALAGNIAFKHCEKDDKVPLLVTASVDRI
RLSSNPTLDRDMEMSGHVVWTGKSSMQIDLEVRALPDTRPWINASFTFVA
RAPTTGKATAINRLEPETEMEKTLFEAVELKNQRRKALRKVAEHTGSKTV
GQHPPDHVGEFDSEAMIKLLLKQARPLLEMPCLADPTCVLVDSTRASNST
IMQPQQRNMLNRVFGGFLMRRAYEIAFSTCYLFAGARPEFYQVAHVDFLS
PVDVGDLMRFDSAVLYTHTGLETGSPHVHVQVVASICRPERVQSSISNTF
NFIFRVPSKATVRKVLPANLDQAKRMIDRMTADLEDE*
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mRNA from alignment at scaffold_10:545298..546961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4423 ID=mRNA_4423|Name=jgi.p|Nanoce1779_2|589056|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at scaffold_10:545298..546961- (Nannochloropsis oceanica)
AGAACGATAGTTACTAGTAGCATCAGTAGCAATAGCAGCAGCCGGAGCGA
TACCAATTACCGCCATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTGTG
GTTGCCGCATCGAGCGCACGCTCTTCCTCTACACGCCTCTCGCCAGTCCT
CCATCTGCCGCGCCGGCACCTTACCGCACACCACAAAAAGGGTGGCACAG
AAAGGTTGGGGGACTTCAAATCCCCCATTGTCACACAGTTGTGGTCGCGA
CGCTCCACGGCGAAGGAGTTGGAGATGGATTCGAGTCATCCAGGCGCGCC
CATTAGAAGAAAGCCGAGTGAGTCACGCACCACCGTTACATACGCATTTA
CGAAGGACCCCTTCCTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCTTC
CGGAAGGGCAAGCTTTTGGAGGACATGGATGCACTCGCTGGAAACATTGC
ATTTAAGCATTGTGAGAAGGATGATAAGGTCCCCTTGTTGGTAAGGCGTA
GTAAAGGAGGAGGCGGTTGTGTGGAGGAAAAGGCAGGGCTTGTGGATAAG
GGAAAGCCATCACCCGCAATAGTCTGATACTCGTCCACAAAATCTCATTT
CCTTTTTGCTTCCGAACATCCCCCCCGCACCATACTCCAGGTGACAGCAA
GCGTGGACAGGATTCGGCTCTCAAGCAACCCTACGCTGGACCGTGACATG
GAAATGTCCGGTCATGTCGTATGGACAGGAAAATCAAGCATGCAGATCGA
TTTGGAAGTCCGGGCGTTGCCGGACACTCGGCCCTGGATCAACGCGTCAT
TTACGTTCGTCGCGCGGGCACCCACTACTGGTAAGGCGACTGCGATCAAT
CGCTTGGAGCCCGAGACGGAGATGGAGAAGACACTATTTGAGGCAGTCGA
GCTAAAGAACCAGCGACGCAAGGCTTTGCGCAAGGTGGCGGAGCATACAG
GGAGTAAGACTGTGGGGCAGCATCCACCGGATCACGTGGGGGAGTTCGAT
AGTGAGGCGATGATTAAATTGCTGCTGAAGCAGGCCCGTCCTTTGCTGGA
GATGCCTTGCTTGGCGGACCCGACGTGCGTGTTGGTGGATAGCACTCGTG
CATCCAACTCGACAATTATGCAACCCCAGCAACGGAATATGCTTAATCGC
GTGTTTGGGGGTTTCCTAATGCGACGAGCCTATGAGATTGCGTTCTCTAC
GTGCTATCTGTTCGCTGGGGCTCGGCCCGAATTTTACCAGGTGGCTCACG
TGGACTTTCTATCGCCCGTGGATGTGGGAGATTTGATGCGTTTTGATTCC
GCGGTGCTCTACACGCACACAGGGCTAGAGACCGGCTCGCCCCATGTGCA
CGTTCAGGTGGTGGCATCAATTTGTCGGCCAGAGAGAGTGCAGAGTTCCA
TAAGCAATACCTTTAATTTTATTTTTCGTGTGCCAAGCAAGGCGACGGTG
CGGAAGGTGTTGCCGGCGAATTTGGACCAGGCAAAGCGGATGATTGATCG
GATGACCGCTGACCTTGAGGACGAGTGAGGGAGCGAAGAAGGGAGGGGGG
CAGAAAGTGAAGATATGGATAGAGACGAAAGGGATGTAGATAGTCAAGGG
TGCACCAGGAATGGATGGCCAAAGAAACGTATCGTCAGTTTGAGCAGCGC
TTTTTGTGTCTTCA
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Coding sequence (CDS) from alignment at scaffold_10:545298..546961-

>mRNA_4423 ID=mRNA_4423|Name=jgi.p|Nanoce1779_2|589056|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_10:545298..546961- (Nannochloropsis oceanica)
GTGACAGCAAGCGTGGACAGGATTCGGCTCTCAAGCAACCCTACGCTGGA
CCGTGACATGGAAATGTCCGGTCATGTCGTATGGACAGGAAAATCAAGCA
TGCAGATCGATTTGGAAGTCCGGGCGTTGCCGGACACTCGGCCCTGGATC
AACGCGTCATTTACGTTCGTCGCGCGGGCACCCACTACTGGTAAGGCGAC
TGCGATCAATCGCTTGGAGCCCGAGACGGAGATGGAGAAGACACTATTTG
AGGCAGTCGAGCTAAAGAACCAGCGACGCAAGGCTTTGCGCAAGGTGGCG
GAGCATACAGGGAGTAAGACTGTGGGGCAGCATCCACCGGATCACGTGGG
GGAGTTCGATAGTGAGGCGATGATTAAATTGCTGCTGAAGCAGGCCCGTC
CTTTGCTGGAGATGCCTTGCTTGGCGGACCCGACGTGCGTGTTGGTGGAT
AGCACTCGTGCATCCAACTCGACAATTATGCAACCCCAGCAACGGAATAT
GCTTAATCGCGTGTTTGGGGGTTTCCTAATGCGACGAGCCTATGAGATTG
CGTTCTCTACGTGCTATCTGTTCGCTGGGGCTCGGCCCGAATTTTACCAG
GTGGCTCACGTGGACTTTCTATCGCCCGTGGATGTGGGAGATTTGATGCG
TTTTGATTCCGCGGTGCTCTACACGCACACAGGGCTAGAGACCGGCTCGC
CCCATGTGCACGTTCAGGTGGTGGCATCAATTTGTCGGCCAGAGAGAGTG
CAGAGTTCCATAAGCAATACCTTTAATTTTATTTTTCGTGTGCCAAGCAA
GGCGACGGTGCGGAAGGTGTTGCCGGCGAATTTGGACCAGGCAAAGCGGA
TGATTGATCGGATGACCGCTGACCTTGAGGACGAGTGAATGCGTCGATCC
TCGGCAACGGTCGTCTCCTCTGTGGTTGCCGCATCGAGCGCACGCTCTTC
CTCTACACGCCTCTCGCCAGTCCTCCATCTGCCGCGCCGGCACCTTACCG
CACACCACAAAAAGGGTGGCACAGAAAGGTTGGGGGACTTCAAATCCCCC
ATTGTCACACAGTTGTGGTCGCGACGCTCCACGGCGAAGGAGTTGGAGAT
GGATTCGAGTCATCCAGGCGCGCCCATTAGAAGAAAGCCGAGTGAGTCAC
GCACCACCGTTACATACGCATTTACGAAGGACCCCTTCCTTTGCCAGAGC
TACGAGAATCCTTGGGGCTTCTTCCGGAAGGGCAAGCTTTTGGAGGACAT
GGATGCACTCGCTGGAAACATTGCATTTAAGCATTGTGAGAAGGATGATA
AGGTCCCCTTGTTGGTGACAGCAAGCGTGGACAGGATTCGGCTCTCAAGC
AACCCTACGCTGGACCGTGACATGGAAATGTCCGGTCATGTCGTATGGAC
AGGAAAATCAAGCATGCAGATCGATTTGGAAGTCCGGGCGTTGCCGGACA
CTCGGCCCTGGATCAACGCGTCATTTACGTTCGTCGCGCGGGCACCCACT
ACTGGTAAGGCGACTGCGATCAATCGCTTGGAGCCCGAGACGGAGATGGA
GAAGACACTATTTGAGGCAGTCGAGCTAAAGAACCAGCGACGCAAGGCTT
TGCGCAAGGTGGCGGAGCATACAGGGAGTAAGACTGTGGGGCAGCATCCA
CCGGATCACGTGGGGGAGTTCGATAGTGAGGCGATGATTAAATTGCTGCT
GAAGCAGGCCCGTCCTTTGCTGGAGATGCCTTGCTTGGCGGACCCGACGT
GCGTGTTGGTGGATAGCACTCGTGCATCCAACTCGACAATTATGCAACCC
CAGCAACGGAATATGCTTAATCGCGTGTTTGGGGGTTTCCTAATGCGACG
AGCCTATGAGATTGCGTTCTCTACGTGCTATCTGTTCGCTGGGGCTCGGC
CCGAATTTTACCAGGTGGCTCACGTGGACTTTCTATCGCCCGTGGATGTG
GGAGATTTGATGCGTTTTGATTCCGCGGTGCTCTACACGCACACAGGGCT
AGAGACCGGCTCGCCCCATGTGCACGTTCAGGTGGTGGCATCAATTTGTC
GGCCAGAGAGAGTGCAGAGTTCCATAAGCAATACCTTTAATTTTATTTTT
CGTGTGCCAAGCAAGGCGACGGTGCGGAAGGTGTTGCCGGCGAATTTGGA
CCAGGCAAAGCGGATGATTGATCGGATGACCGCTGACCTTGAGGACGAGT
GAATGCGTCGATCCTCGGCAACGGTCGTCTCCTCTGTGGTTGCCGCATCG
AGCGCACGCTCTTCCTCTACACGCCTCTCGCCAGTCCTCCATCTGCCGCG
CCGGCACCTTACCGCACACCACAAAAAGGGTGGCACAGAAAGGTTGGGGG
ACTTCAAATCCCCCATTGTCACACAGTTGTGGTCGCGACGCTCCACGGCG
AAGGAGTTGGAGATGGATTCGAGTCATCCAGGCGCGCCCATTAGAAGAAA
GCCGAGTGAGTCACGCACCACCGTTACATACGCATTTACGAAGGACCCCT
TCCTTTGCCAGAGCTACGAGAATCCTTGGGGCTTCTTCCGGAAGGGCAAG
CTTTTGGAGGACATGGATGCACTCGCTGGAAACATTGCATTTAAGCATTG
TGAGAAGGATGATAAGGTCCCCTTGTTG
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Synonyms
Publications