jgi.p|Nanoce1779_2|555210, mRNA_4422 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555210
Unique Name	mRNA_4422
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2242
Alignment location	scaffold_10:542849..545311 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	555296
Track	FilteredModels2
ProteinId	555210

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:542849..545311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555210	gene_4422	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555210	mRNA_4422-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4422	CDS_4422	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:542849..545311+
coding sequence from alignment at scaffold_10:542849..545311+

mRNA sequence

>mRNA_4422 ID=mRNA_4422|Name=jgi.p|Nanoce1779_2|555210|organism=Nannochloropsis oceanica|type=mRNA|length=2242bp
ACAGACCATTTAAAGCGTTTGAAGTGCATCAGGTGTTCGCAGCGTCGTCC
AGGGAAGTGGTGAGCCTGCAGTTAATCCCTAAATTACGAGCATGATTCGC
CGTGCATGTGTGGGCGTGTCGTGGTCCACTTTTTGTCGTCCTCGTCACGT
CCCACGTCCCACGCCTTCGCAGCAGCTGAACCACCATCATGCAACCTACA
TTCTGCTGTTTGTTTAATCATAGCTGCTTGGGGCGAGTGATCTGACGATG
TGTACATAGGGGAGCTTGTCAAGCCCTGCTGCTGATGCGAGAAAGTGAGA
TTTAAGTCAATGCCACCGGAACCCCCGTGCGCCTACAAGGAAACTCATGG
ACAGGAGTACTGGAAGTCATACACTCAAAATGCTGTCTAGCGGGCACAGC
GTGAAGGAATTCTTTTGGGCAGACCAGGAGGTCGAAATTCCGTTTCAAAT
AGTAGCGACCTTCGTGCCAGAACACATGCCCTGTGGCATGCCGCGTTTTC
TGCCAAAATTCTGTCCTTGTCGCTGTGTTCTGTAGCGCACAGAACCAGTA
GTGCGCACATATAGCACCATGAGGCGAATTTTCTATGCATTGAGTCGGTG
GGCTGCTCAGCTACAGATCTATGCATCTCCGCCTGCAACTTGACCTCTTA
ATGGATGGTGGCTCTGGTTCTCTCTCACACAAGCAAGGCCACTCTTGACC
ATGCATTTATTTTCCGACTTAAAACTATACTTGCAGGCACAAGGCAATAT
TCCTACGGAAAGAAATTGGGGGGGTCGCTCCCCACCTGTGTGCCTTTCTA
GCGCTTATTGCGTTTCTTTTTCGCCGCCACGAGCTCTGCATCTGAAAAAC
ACCAATATTTTAAATTTCGCACCACTTCTTTTCCACCATACATACATTTC
TATCGGCAGGCCTACTTCTCGCGAGTCTCGAGAAGTCACACACCAAAAGA
AGGTCCTTTCTCTTCTTCCACCTCTGCCTCCTCCTCCTTCGTCTCGACCA
CACACACGCCACAAGCACCATCCATCCCTACCTTTAGTATGGCGCGGCAA
GAGAATCCCTTCGATATGCAGATCAAGCTGTTGATGATTGGGGACTCGGG
GGTGGGTAAAACGTGTCTGCTGCTGCGGTACGCCAACGATTCTTTCTCGC
CTACTTTCATCACCACTATTGGCATCGACTTTAAAATTAAAAATCTTGAA
CTGGACGGCAAACGAATCAAACTCCAAATCTGGGATACGGCTGGGCAAGA
ACGTTTTCGAACCATCACCACGTCCTACTTCCGAGGGGCGCAGGGCATCC
TTCTCGTCTATGATGTGACGGACCGTCGATCTTTCGAGTCCATCCGGAAC
TGGGTTGGTCAGATTCAGCAACACGCTGATGTGCACGTGAATAAAATTTT
GATCGGAAACAAGTGCGACATGACTCCTCAGAGGGTGGTGACGACGGAAG
AAGGGCAGTCATTGGCGAATGATTTCGGGATTCAATTTTTTGAGACGTCG
GCTAAGAACGACGTCAATGTGGAGAAGTCTTTTGTGACGATCGCAAGGGA
GGTGAAGAATAGGATGTTGGTTGATGGAGGGCCTAGGGCGACAGGTGGAA
AGGCTATTGTTGATGCTAAGAAGGGGAGTGATGCCAAGAAGTGTTGTTAG
GCAGACTAGAAGCGGAGGGATGGAGGCAGGTGTTGAGGTTTACATTTTTG
TGATAGTGCAGGACTAGGCGAGGACGAAGGAAAGCAGGGGGAGGATGCAC
GTACAGCTGATGCATTCGAGTGAAAGGAGAGGGGCAGGAGGGTCGGGAGT
GAGGGAAGATGCAACGGGGGATTGAGTGCCTACCTGTATTTGTAAGATGG
AGGAAGGAGGGGCTCGTCTTGTGGAGAGCATACTCACCATCAAACAAAGA
GAGGAGAGAAAGAGAGAGAACTCCGCGTCATTTCAGAACGGAGAAGATGG
GGATTGGGAGGAACGGGAAGGAGAGATGGAGGGAGCTTTGCATTCAAGAA
AGAGGTGAAGGAAGGAACAAACACGCAACAACAATACCGGAAAAAACGAT
CCCGCAACCAACAGAATCAAAACCAAGAAACCGCAGTTGTATAGGCACAC
ACGCGTCTTGTCCGTGAAGGATCACCCACGGCTTCGCGCACAAATGAGAA
GGAAGGAGACCTGCAGGGAAAACACGAAGGAAGAAAAACGAAAAAGGATA
ACCACACGAGGCAAAACAATATAGAAAGTGAAGACACAAAAA

protein sequence of jgi.p|Nanoce1779_2|555210

>mRNA_4422-protein ID=mRNA_4422-protein|Name=jgi.p|Nanoce1779_2|555210|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKI
KNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFE
SIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQF
FETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAK
KCC*

mRNA from alignment at scaffold_10:542849..545311+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4422 ID=mRNA_4422|Name=jgi.p|Nanoce1779_2|555210|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at scaffold_10:542849..545311+ (Nannochloropsis oceanica)
ACAGACCATTTAAAGCGTTTGAAGTGCATCAGGTGTTCGCAGCGTCGTCC
AGGGAAGTGGTGAGCCTGCAGTTAATCCCTAAATTACGAGCATGATTCGC
CGTGCATGTGTGGGCGTGTCGTGGTCCACTTTTTGTCGTCCTCGTCACGT
CCCACGTCCCACGCCTTCGCAGCAGCTGAACCACCATCATGCAACCTACA
TTCTGCTGTTTGTTTAATCATAGCTGCTTGGGGCGAGTGATCTGACGATG
TGTACATAGGGGAGCTTGTCAAGCCCTGCTGCTGATGCGAGAAAGTGAGA
TTTAAGTCAATGCCACCGGAACCCCCGTGCGCCTACAAGGAAACTCATGG
ACAGGAGTACTGGAAGTCATACACTCAAAATGCTGTCTAGCGGGCACAGC
GTGAAGGAATTCTTTTGGGCAGACCAGGAGGTCGAAATTCCGTTTCAAAT
AGTAGCGACCTTCGTGCCAGAACACATGCCCTGTGGCATGCCGCGTTTTC
TGCCAAAATTCTGTCCTTGTCGCTGTGTTCTGTAGCGCACAGAACCAGTA
GTGCGCACATATAGCACCATGAGGCGAATTTTCTATGCATTGAGTCGGTG
GGCTGCTCAGCTACAGATCTATGCATCTCCGCCTGCAACTTGACCTCTTA
ATGGATGGTGGCTCTGGTTCTCTCTCACACAAGCAAGGCCACTCTTGACC
ATGCATTTATTTTCCGACTTAAAACTATACTTGCAGGCACAAGGCAATAT
TCCTACGGAAAGAAATTGGGGGGGTCGCTCCCCACCTGTGTGCCTTTCTA
GCGCTTATTGCGTTTCTTTTTCGCCGCCACGAGCTCTGCATCTGAAAAAC
ACCAATATTTTAAATTTCGCACCACTTCTTTTCCACCATACATACATTTC
TATCGGCAGGCCTACTTCTCGCGAGTCTCGAGAAGTCACACACCAAAAGA
AGGTCCTTTCTCTTCTTCCACCTCTGCCTCCTCCTCCTTCGTCTCGACCA
CACACACGCCACAAGCACCATCCATCCCTACCTTTAGTATGGCGCGGCAA
GAGAATCCCTTCGATATGCAGATCAAGCTGTTGATGATTGGGGACTCGGG
GGTGGGTAAAACGTGTCTGCTGCTGCGGTACGCCAACGATTCTTTCTCGC
CTACTTTCATCACCACTATTGGGTGCGTACATCCTTAGCTAGGGAGGATT
GGAGGGAGTGAGGGAATGAAGGCTTAGAGTTTTAGAATGTGGACCAAATT
TGTCTTCCAGTTGCCTTCAAATATCCTCATTTTTTGTGCGTATGAGAGTG
AGGCATGTCACCTCTTTCAGCCTCGTCTTGGCCTCCTCTCTCTCTTCTCT
GTCTACACTTACACTTCCACCTCCCTTCCTCACTCCCCCACAGCATCGAC
TTTAAAATTAAAAATCTTGAACTGGACGGCAAACGAATCAAACTCCAAAT
CTGGGATACGGCTGGGCAAGAACGTTTTCGAACCATCACCACGTCCTACT
TCCGAGGGGCGCAGGGCATCCTTCTCGTCTATGATGTGACGGACCGTCGA
TCTTTCGAGTCCATCCGGAACTGGGTTGGTCAGATTCAGCAACACGCTGA
TGTGCACGTGAATAAAATTTTGATCGGAAACAAGTGCGACATGACTCCTC
AGAGGGTGGTGACGACGGAAGAAGGGCAGTCATTGGCGAATGATTTCGGG
ATTCAATTTTTTGAGACGTCGGCTAAGAACGACGTCAATGTGGAGAAGTC
TTTTGTGACGATCGCAAGGGAGGTGAAGAATAGGATGTTGGTTGATGGAG
GGCCTAGGGCGACAGGTGGAAAGGCTATTGTTGATGCTAAGAAGGGGAGT
GATGCCAAGAAGTGTTGTTAGGCAGACTAGAAGCGGAGGGATGGAGGCAG
GTGTTGAGGTTTACATTTTTGTGATAGTGCAGGACTAGGCGAGGACGAAG
GAAAGCAGGGGGAGGATGCACGTACAGCTGATGCATTCGAGTGAAAGGAG
AGGGGCAGGAGGGTCGGGAGTGAGGGAAGATGCAACGGGGGATTGAGTGC
CTACCTGTATTTGTAAGATGGAGGAAGGAGGGGCTCGTCTTGTGGAGAGC
ATACTCACCATCAAACAAAGAGAGGAGAGAAAGAGAGAGAACTCCGCGTC
ATTTCAGAACGGAGAAGATGGGGATTGGGAGGAACGGGAAGGAGAGATGG
AGGGAGCTTTGCATTCAAGAAAGAGGTGAAGGAAGGAACAAACACGCAAC
AACAATACCGGAAAAAACGATCCCGCAACCAACAGAATCAAAACCAAGAA
ACCGCAGTTGTATAGGCACACACGCGTCTTGTCCGTGAAGGATCACCCAC
GGCTTCGCGCACAAATGAGAAGGAAGGAGACCTGCAGGGAAAACACGAAG
GAAGAAAAACGAAAAAGGATAACCACACGAGGCAAAACAATATAGAAAGT
GAAGACACAAAAA

Coding sequence (CDS) from alignment at scaffold_10:542849..545311+

>mRNA_4422 ID=mRNA_4422|Name=jgi.p|Nanoce1779_2|555210|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_10:542849..545311+ (Nannochloropsis oceanica)
ATGGCGCGGCAAGAGAATCCCTTCGATATGCAGATCAAGCTGTTGATGAT
TGGGGACTCGGGGGTGGGTAAAACGTGTCTGCTGCTGCGGTACGCCAACG
ATTCTTTCTCGCCTACTTTCATCACCACTATTGGCATCGACTTTAAAATT
AAAAATCTTGAACTGGACGGCAAACGAATCAAACTCCAAATCTGGGATAC
GGCTGGGCAAGAACGTTTTCGAACCATCACCACGTCCTACTTCCGAGGGG
CGCAGGGCATCCTTCTCGTCTATGATGTGACGGACCGTCGATCTTTCGAG
TCCATCCGGAACTGGGTTGGTCAGATTCAGCAACACGCTGATGTGCACGT
GAATAAAATTTTGATCGGAAACAAGTGCGACATGACTCCTCAGAGGGTGG
TGACGACGGAAGAAGGGCAGTCATTGGCGAATGATTTCGGGATTCAATTT
TTTGAGACGTCGGCTAAGAACGACGTCAATGTGGAGAAGTCTTTTGTGAC
GATCGCAAGGGAGGTGAAGAATAGGATGTTGGTTGATGGAGGGCCTAGGG
CGACAGGTGGAAAGGCTATTGTTGATGCTAAGAAGGGGAGTGATGCCAAG
AAGTGTTGTTAGATGGCGCGGCAAGAGAATCCCTTCGATATGCAGATCAA
GCTGTTGATGATTGGGGACTCGGGGGTGGGTAAAACGTGTCTGCTGCTGC
GGTACGCCAACGATTCTTTCTCGCCTACTTTCATCACCACTATTGGCATC
GACTTTAAAATTAAAAATCTTGAACTGGACGGCAAACGAATCAAACTCCA
AATCTGGGATACGGCTGGGCAAGAACGTTTTCGAACCATCACCACGTCCT
ACTTCCGAGGGGCGCAGGGCATCCTTCTCGTCTATGATGTGACGGACCGT
CGATCTTTCGAGTCCATCCGGAACTGGGTTGGTCAGATTCAGCAACACGC
TGATGTGCACGTGAATAAAATTTTGATCGGAAACAAGTGCGACATGACTC
CTCAGAGGGTGGTGACGACGGAAGAAGGGCAGTCATTGGCGAATGATTTC
GGGATTCAATTTTTTGAGACGTCGGCTAAGAACGACGTCAATGTGGAGAA
GTCTTTTGTGACGATCGCAAGGGAGGTGAAGAATAGGATGTTGGTTGATG
GAGGGCCTAGGGCGACAGGTGGAAAGGCTATTGTTGATGCTAAGAAGGGG
AGTGATGCCAAGAAGTGTTGTTAG

Synonyms

Publications