jgi.p|Nanoce1779_2|589052, mRNA_4421 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589052
Unique Name	mRNA_4421
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1551
Alignment location	scaffold_10:540914..542650 -

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Properties


Property Name	Value
TranscriptId	589138
Track	FilteredModels2
ProteinId	589052

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:540914..542650 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589052	gene_4421	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589052	mRNA_4421-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4421	CDS_4421	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:540914..542650-
coding sequence from alignment at scaffold_10:540914..542650-

mRNA sequence

>mRNA_4421 ID=mRNA_4421|Name=jgi.p|Nanoce1779_2|589052|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
ACAACAGCAGGCTTGGGCGCCAGGAGCAAGTCAGCCAGGAAAGCGGTGCG
AACGGTAGGCAGCAACGGCCGGAGACATGCAGCGAACCACGCGGAGTGGT
CTCGCGTATTTAATCAAGACCTTGCCGTCCTCCAGCAGCGCTAGCCTTTC
TGCCACGTGCACCATCCTCTTTTGCCATGCAAATGGATTCAACAAGGAGG
TCTTCCTACCCGTGTGGGAGGAGCTGGAGAAGCGCTGGCGGGCTTATCCG
GGCACGTGTCCTCCTCCCCTGACCCTCGTAAGTCTTGATTTTACGGGCCA
TGGAGACAGCCGAGGCGTTTCGGGGCCCGAGTGCTACGACTGGCGAAAGG
GGGCAGGGCGGGACGTGTTAGAGATGCTGCAAGAGTTGGGGCAGACGGGA
ACGACGCCCTGCCTTGGCGTGGGCCATTCTCTGGGGGCTACGGCCCTGAC
TATGGTGGAGTTGACGCATCCAGGCCTATTTTTTGCGGGGCTGGTACTGA
TAGAGCCGGTGCTTGTGCCTCCTGGCGGAGAAGGATCCATGTCGGAGGCT
TTGTCGGAGCGGGCACTGAAGCGGCGAGCATCGTGGCCATACAAAACAGC
AGCAAGGGAGTACTTAGCAAGCCGGCAAATGTTCAAGCGTTGGGACCCCC
GGGCTTTCAATGCCTATATCGATGGAGGACTTGAAGAAATCGACCACAAA
GGTGACCCACACCAATTACCAACAGGGACAATCCAGCGCATGGTCCGACT
AAAGTGCAAACCTGAGAGCGAAGCAGGTTATTACCGCGGCGCTGGTGCTA
GTGTCTGGCCTGAGCTTCCCAAATTGGGTGTTTCTCGTCCCGTCACTTTC
ATTGCGGGCGAGCATTCCGAACACATGTCAGCTATACTAATAACTGAGAA
ACATTCAACGGGCGCGGATGCGGCGAGGATGCTGGTGGGATTGATGGGGC
CACAAACACGCCTGGTGCTTGTCCCGAAGGGGAGCCATTTTGTAGTGATG
GAGGACGTGGCACTGGTGGCAGGCATGGTGTGGGAACGTGTGTTGGAGAC
AATGAGAGAAAAAAATAGTAGCGGCAGTACTGCAGGAGAGGAAGGCGCCG
GTGCACGGTCATCTTTGTGAGCTGGTCGTAAGCATTTCCGCAATGCCTGC
TTGCTGTTCTTTTCTCGGATACCTTTGAAGAAAATCCTCCTTCCAATTAT
TGACGAGCCGCTTCCTTTGACAAGTGGATACAAATTGAAGCATGTACAAA
GAAAGAAATTGCAAATGAGGGACCTACACCAAAATATATTTATCACCCCC
CTTTGCTTCAACACTCACCACAATTTACTAACAGACACACACACGTACAC
ACACACACACACACACACACATATATATATATATATTATATACAGGGTAT
CGTCGCTGGCTTCGGCGTCGTCCTAAACGTGAGGTTGTCATCCATCAGTG
ATCATGCGGCTCCCTGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCC
ACTACAAACAACCTACGCCTTCGTCATCGTCCCCCGTCACCACCACCACT
A

protein sequence of jgi.p|Nanoce1779_2|589052

>mRNA_4421-protein ID=mRNA_4421-protein|Name=jgi.p|Nanoce1779_2|589052|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MQRTTRSGLAYLIKTLPSSSSASLSATCTILFCHANGFNKEVFLPVWEEL
EKRWRAYPGTCPPPLTLVSLDFTGHGDSRGVSGPECYDWRKGAGRDVLEM
LQELGQTGTTPCLGVGHSLGATALTMVELTHPGLFFAGLVLIEPVLVPPG
GEGSMSEALSERALKRRASWPYKTAAREYLASRQMFKRWDPRAFNAYIDG
GLEEIDHKGDPHQLPTGTIQRMVRLKCKPESEAGYYRGAGASVWPELPKL
GVSRPVTFIAGEHSEHMSAILITEKHSTGADAARMLVGLMGPQTRLVLVP
KGSHFVVMEDVALVAGMVWERVLETMREKNSSGSTAGEEGAGARSSL*

mRNA from alignment at scaffold_10:540914..542650-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4421 ID=mRNA_4421|Name=jgi.p|Nanoce1779_2|589052|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_10:540914..542650- (Nannochloropsis oceanica)
ACAACAGCAGGCTTGGGCGCCAGGAGCAAGTCAGCCAGGAAAGCGGTGCG
AACGGTAGGCAGCAACGGCCGGAGACATGCAGCGTAAGAAGAGCTACAGC
TCGAATGGAGGGCTGGGAGGCATTGATGGAGCACTCACACACCAATACAA
AACGACAGGAACCACGCGGAGTGGTCTCGCGTATTTAATCAAGACCTTGC
CGTCCTCCAGCAGCGCTAGCCTTTCTGCCACGTGCACCATCCTCTTTTGC
CATGCAAATGGATTCAACAAGGAGGTCTTCCTACCCGTGTGGGAGGAGCT
GGAGAAGCGCTGGCGGGCTTATCCGGGCACGTGTCCTCCTCCCCTGACCC
TCGTAAGTCTTGATTTTACGGGCCATGGAGACAGCCGAGGCGTTTCGGGG
CCCGAGTGCTACGACTGGCGAAAGGGGGCAGGGCGGGACGTGTTAGAGAT
GCTGCAAGAGTTGGGGCAGACGGGAACGACGCCCTGCCTTGGCGTGGGCC
ATTCTCTGGGGGCTACGGCCCTGACTATGGTGGAGTTGACGCATCCAGGC
CTATTTTTTGCGGGGCTGGTACTGATAGAGCCGGTGCTTGTGCCTCCTGG
CGGAGAAGGATCCATGTCGGAGGCTTTGTCGGAGCGGGCACTGAAGCGGC
GAGCATCGTGGTTAGTCTTGGGTTGGATTTTCTTTCTGACCGGAGATGTG
TGTTTCTGCGTGAAAAATGTATAGATTGATGATTATTCATATGCTCCTAC
TCCTCTTTCCTTTCTTAAAAGGCCATACAAAACAGCAGCAAGGGAGTACT
TAGCAAGCCGGCAAATGTTCAAGCGTTGGGACCCCCGGGCTTTCAATGCC
TATATCGATGGAGGACTTGAAGAAATCGACCACAAAGGTGACCCACACCA
ATTACCAACAGGGACAATCCAGCGCATGGTCCGACTAAAGTGCAAACCTG
AGAGCGAAGCAGGTTATTACCGCGGCGCTGGTGCTAGTGTCTGGCCTGAG
CTTCCCAAATTGGGTGTTTCTCGTCCCGTCACTTTCATTGCGGGCGAGCA
TTCCGAACACATGTCAGCTATACTAATAACTGAGAAACATTCAACGGGCG
CGGATGCGGCGAGGATGCTGGTGGGATTGATGGGGCCACAAACACGCCTG
GTGCTTGTCCCGAAGGGGAGCCATTTTGTAGTGATGGAGGACGTGGCACT
GGTGGCAGGCATGGTGTGGGAACGTGTGTTGGAGACAATGAGAGAAAAAA
ATAGTAGCGGCAGTACTGCAGGAGAGGAAGGCGCCGGTGCACGGTCATCT
TTGTGAGCTGGTCGTAAGCATTTCCGCAATGCCTGCTTGCTGTTCTTTTC
TCGGATACCTTTGAAGAAAATCCTCCTTCCAATTATTGACGAGCCGCTTC
CTTTGACAAGTGGATACAAATTGAAGCATGTACAAAGAAAGAAATTGCAA
ATGAGGGACCTACACCAAAATATATTTATCACCCCCCTTTGCTTCAACAC
TCACCACAATTTACTAACAGACACACACACGTACACACACACACACACAC
ACACACATATATATATATATATTATATACAGGGTATCGTCGCTGGCTTCG
GCGTCGTCCTAAACGTGAGGTTGTCATCCATCAGTGATCATGCGGCTCCC
TGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCCACTACAAACAACCT
ACGCCTTCGTCATCGTCCCCCGTCACCACCACCACTA

Coding sequence (CDS) from alignment at scaffold_10:540914..542650-

>mRNA_4421 ID=mRNA_4421|Name=jgi.p|Nanoce1779_2|589052|organism=Nannochloropsis oceanica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_10:540914..542650- (Nannochloropsis oceanica)
GCCATACAAAACAGCAGCAAGGGAGTACTTAGCAAGCCGGCAAATGTTCA
AGCGTTGGGACCCCCGGGCTTTCAATGCCTATATCGATGGAGGACTTGAA
GAAATCGACCACAAAGGTGACCCACACCAATTACCAACAGGGACAATCCA
GCGCATGGTCCGACTAAAGTGCAAACCTGAGAGCGAAGCAGGTTATTACC
GCGGCGCTGGTGCTAGTGTCTGGCCTGAGCTTCCCAAATTGGGTGTTTCT
CGTCCCGTCACTTTCATTGCGGGCGAGCATTCCGAACACATGTCAGCTAT
ACTAATAACTGAGAAACATTCAACGGGCGCGGATGCGGCGAGGATGCTGG
TGGGATTGATGGGGCCACAAACACGCCTGGTGCTTGTCCCGAAGGGGAGC
CATTTTGTAGTGATGGAGGACGTGGCACTGGTGGCAGGCATGGTGTGGGA
ACGTGTGTTGGAGACAATGAGAGAAAAAAATAGTAGCGGCAGTACTGCAG
GAGAGGAAGGCGCCGGTGCACGGTCATCTTTGTGAGAACCACGCGGAGTG
GTCTCGCGTATTTAATCAAGACCTTGCCGTCCTCCAGCAGCGCTAGCCTT
TCTGCCACGTGCACCATCCTCTTTTGCCATGCAAATGGATTCAACAAGGA
GGTCTTCCTACCCGTGTGGGAGGAGCTGGAGAAGCGCTGGCGGGCTTATC
CGGGCACGTGTCCTCCTCCCCTGACCCTCGTAAGTCTTGATTTTACGGGC
CATGGAGACAGCCGAGGCGTTTCGGGGCCCGAGTGCTACGACTGGCGAAA
GGGGGCAGGGCGGGACGTGTTAGAGATGCTGCAAGAGTTGGGGCAGACGG
GAACGACGCCCTGCCTTGGCGTGGGCCATTCTCTGGGGGCTACGGCCCTG
ACTATGGTGGAGTTGACGCATCCAGGCCTATTTTTTGCGGGGCTGGTACT
GATAGAGCCGGTGCTTGTGCCTCCTGGCGGAGAAGGATCCATGTCGGAGG
CTTTGTCGGAGCGGGCACTGAAGCGGCGAGCATCGTGATGCAGCGCCATA
CAAAACAGCAGCAAGGGAGTACTTAGCAAGCCGGCAAATGTTCAAGCGTT
GGGACCCCCGGGCTTTCAATGCCTATATCGATGGAGGACTTGAAGAAATC
GACCACAAAGGTGACCCACACCAATTACCAACAGGGACAATCCAGCGCAT
GGTCCGACTAAAGTGCAAACCTGAGAGCGAAGCAGGTTATTACCGCGGCG
CTGGTGCTAGTGTCTGGCCTGAGCTTCCCAAATTGGGTGTTTCTCGTCCC
GTCACTTTCATTGCGGGCGAGCATTCCGAACACATGTCAGCTATACTAAT
AACTGAGAAACATTCAACGGGCGCGGATGCGGCGAGGATGCTGGTGGGAT
TGATGGGGCCACAAACACGCCTGGTGCTTGTCCCGAAGGGGAGCCATTTT
GTAGTGATGGAGGACGTGGCACTGGTGGCAGGCATGGTGTGGGAACGTGT
GTTGGAGACAATGAGAGAAAAAAATAGTAGCGGCAGTACTGCAGGAGAGG
AAGGCGCCGGTGCACGGTCATCTTTGTGAGAACCACGCGGAGTGGTCTCG
CGTATTTAATCAAGACCTTGCCGTCCTCCAGCAGCGCTAGCCTTTCTGCC
ACGTGCACCATCCTCTTTTGCCATGCAAATGGATTCAACAAGGAGGTCTT
CCTACCCGTGTGGGAGGAGCTGGAGAAGCGCTGGCGGGCTTATCCGGGCA
CGTGTCCTCCTCCCCTGACCCTCGTAAGTCTTGATTTTACGGGCCATGGA
GACAGCCGAGGCGTTTCGGGGCCCGAGTGCTACGACTGGCGAAAGGGGGC
AGGGCGGGACGTGTTAGAGATGCTGCAAGAGTTGGGGCAGACGGGAACGA
CGCCCTGCCTTGGCGTGGGCCATTCTCTGGGGGCTACGGCCCTGACTATG
GTGGAGTTGACGCATCCAGGCCTATTTTTTGCGGGGCTGGTACTGATAGA
GCCGGTGCTTGTGCCTCCTGGCGGAGAAGGATCCATGTCGGAGGCTTTGT
CGGAGCGGGCACTGAAGCGGCGAGCATCGTGATGCAGCGCCATACAAAAC
AGCAGCAAGGGAGTACTTAGCAAGCCGGCAAATGTTCAAGCGTTGGGACC
CCCGGGCTTTCAATGCCTATATCGATGGAGGACTTGAAGAAATCGACCAC
AAAGGTGACCCACACCAATTACCAACAGGGACAATCCAGCGCATGGTCCG
ACTAAAGTGCAAACCTGAGAGCGAAGCAGGTTATTACCGCGGCGCTGGTG
CTAGTGTCTGGCCTGAGCTTCCCAAATTGGGTGTTTCTCGTCCCGTCACT
TTCATTGCGGGCGAGCATTCCGAACACATGTCAGCTATACTAATAACTGA
GAAACATTCAACGGGCGCGGATGCGGCGAGGATGCTGGTGGGATTGATGG
GGCCACAAACACGCCTGGTGCTTGTCCCGAAGGGGAGCCATTTTGTAGTG
ATGGAGGACGTGGCACTGGTGGCAGGCATGGTGTGGGAACGTGTGTTGGA
GACAATGAGAGAAAAAAATAGTAGCGGCAGTACTGCAGGAGAGGAAGGCG
CCGGTGCACGGTCATCTTTGTGAGAACCACGCGGAGTGGTCTCGCGTATT
TAATCAAGACCTTGCCGTCCTCCAGCAGCGCTAGCCTTTCTGCCACGTGC
ACCATCCTCTTTTGCCATGCAAATGGATTCAACAAGGAGGTCTTCCTACC
CGTGTGGGAGGAGCTGGAGAAGCGCTGGCGGGCTTATCCGGGCACGTGTC
CTCCTCCCCTGACCCTCGTAAGTCTTGATTTTACGGGCCATGGAGACAGC
CGAGGCGTTTCGGGGCCCGAGTGCTACGACTGGCGAAAGGGGGCAGGGCG
GGACGTGTTAGAGATGCTGCAAGAGTTGGGGCAGACGGGAACGACGCCCT
GCCTTGGCGTGGGCCATTCTCTGGGGGCTACGGCCCTGACTATGGTGGAG
TTGACGCATCCAGGCCTATTTTTTGCGGGGCTGGTACTGATAGAGCCGGT
GCTTGTGCCTCCTGGCGGAGAAGGATCCATGTCGGAGGCTTTGTCGGAGC
GGGCACTGAAGCGGCGAGCATCGTGATGCAGC

Synonyms

Publications