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Properties
| Property Name | Value |
|---|
| TranscriptId | 577423 |
| Track | FilteredModels2 |
| ProteinId | 577337 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1091783..1093126 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_442 ID=mRNA_442|Name=jgi.p|Nanoce1779_2|577337|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ACAGGCCTGCAATCGGCTCCCTCTAGCGGCCGCACATATAACTTCTCATT
GGCCGACCTCCCCCTTCTCCCAAGTCATCCAGTCTCATGTCCCGAATCTT
AGCGGGGCCCTTTAGCCTGGCGTGTGTTGTCGTCGCCTTAGCAGCGAGTA
GCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAAATTTGATGGCTTCC
GCCCATGCCACTGCGCGGTCACAGATAAAAACCTCCTCTCCTTTGTCCTC
GGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCGGATGATGTTGGCCA
TGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTTCAGCGTCAATCCTG
CTGCCCTTTTTGCGTCAACGCGGTGGGGCGGGCTCAACTTCCATATCTGC
CAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGACCCTTCTAAGCACCT
TTATGGGCTACACCATCATCGCCGGCTCTATGCTCTTCAAGGTCCCGCAA
GCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGCTTATCTTCATCCAT
GTATGTGCTGGAAACGGTTGGAATCGCCATGTCCCTTGCATTCAGCATCC
GCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGGTCTTCATCCTCCTG
CAAAATGTCATCATTATGAGCGGGATTTCACTCTACTCCAATCAACCCCG
CCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTCTTTATTTTTTGCCT
TAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCTCGATCCTCCAAAGC
ATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCCCAACTTCTCCTGAA
CCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTCCACATTAATTCTTC
AGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCTTTGTACAGGTGCAG
AATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATGCTCTTCAATGGGGC
ATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCCTCCAGTAAGGCCAT
CCAAGGAGGTGTGGTAAAAGCTTGATGGCAGGAGAGAGATGGAGAGAAGG
AAAGACGGGGCAATAGGAGGAAGGAAGGTGTGTGTGTGTGTGTGTGCGTG
AGTGTGTGTGGAGGTAGGTTTTAATGTCTTGTTAACTGTCTGACATTTGT
GTGCTTAAATGATGCTCGTTTTTCGTTGTTGTCGCTAAAAGGACGAGGGA
TAGATAGTAAGCGACCAAATTTGGAGAGAGGGGACTGATAGAGGAAGGGC
GACCAAGACACAATAAAAATGAAGCGTCGCATACAGAAAGGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|577337 >mRNA_442-protein ID=mRNA_442-protein|Name=jgi.p|Nanoce1779_2|577337|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSRILAGPFSLACVVVALAASSTTRAFAVGQSKNLMASAHATARSQIKTS
SPLSSASSSSRSSASMRMMLAMPLSRTALSSTPSASILLPFLRQRGGAGS
TSISASPTKVGGLDTLTLLSTFMGYTIIAGSMLFKVPQAARIFRKKSASG
LSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLY
SNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIP
QLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAM
LFNGALVAQFFMYRGQPPVRPSKEVW* back to topmRNA from alignment at scaffold_3:1091783..1093126- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_442 ID=mRNA_442|Name=jgi.p|Nanoce1779_2|577337|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_3:1091783..1093126- (Nannochloropsis oceanica)
ACAGGCCTGCAATCGGCTCCCTCTAGCGGCCGCACATATAACTTCTCATT
GGCCGACCTCCCCCTTCTCCCAAGTCATCCAGTCTCATGTCCCGAATCTT
AGCGGGGCCCTTTAGCCTGGCGTGTGTTGTCGTCGCCTTAGCAGCGAGTA
GCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAAATTTGATGGCTTCC
GCCCATGCCACTGCGCGGTCACAGATAAAAACCTCCTCTCCTTTGTCCTC
GGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCGGATGATGTTGGCCA
TGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTTCAGCGTCAATCCTG
CTGCCCTTTTTGCGTCAACGCGGTGGGGCGGGCTCAACTTCCATATCTGC
CAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGACCCTTCTAAGCACCT
TTATGGGCTACACCATCATCGCCGGCTCTATGCTCTTCAAGGTCCCGCAA
GCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGCTTATCTTCATCCAT
GTATGTGCTGGAAACGGTTGGAATCGCCATGTCCCTTGCATTCAGCATCC
GCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGGTCTTCATCCTCCTG
CAAAATGTCATCATTATGAGCGGGATTTCACTCTACTCCAATCAACCCCG
CCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTCTTTATTTTTTGCCT
TAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCTCGATCCTCCAAAGC
ATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCCCAACTTCTCCTGAA
CCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTCCACATTAATTCTTC
AGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCTTTGTACAGGTGCAG
AATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATGCTCTTCAATGGGGC
ATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCCTCCAGTAAGGCCAT
CCAAGGAGGTGTGGTAAAAGCTTGATGGCAGGAGAGAGATGGAGAGAAGG
AAAGACGGGGCAATAGGAGGAAGGAAGGTGTGTGTGTGTGTGTGTGCGTG
AGTGTGTGTGGAGGTAGGTTTTAATGTCTTGTTAACTGTCTGACATTTGT
GTGCTTAAATGATGCTCGTTTTTCGTTGTTGTCGCTAAAAGGACGAGGGA
TAGATAGTAAGCGACCAAATTTGGAGAGAGGGGACTGATAGAGGAAGGGC
GACCAAGACACAATAAAAATGAAGCGTCGCATACAGAAAGGGAG back to topCoding sequence (CDS) from alignment at scaffold_3:1091783..1093126- >mRNA_442 ID=mRNA_442|Name=jgi.p|Nanoce1779_2|577337|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_3:1091783..1093126- (Nannochloropsis oceanica)
ATGTCCCGAATCTTAGCGGGGCCCTTTAGCCTGGCGTGTGTTGTCGTCGC
CTTAGCAGCGAGTAGCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAA
ATTTGATGGCTTCCGCCCATGCCACTGCGCGGTCACAGATAAAAACCTCC
TCTCCTTTGTCCTCGGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCG
GATGATGTTGGCCATGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTT
CAGCGTCAATCCTGCTGCCCTTTTTGCGTCAACGCGGTGGGGCGGGCTCA
ACTTCCATATCTGCCAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGAC
CCTTCTAAGCACCTTTATGGGCTACACCATCATCGCCGGCTCTATGCTCT
TCAAGGTCCCGCAAGCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGC
TTATCTTCATCCATGTATGTGCTGGAAACGGTTGGAATCGCCATGTCCCT
TGCATTCAGCATCCGCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGG
TCTTCATCCTCCTGCAAAATGTCATCATTATGAGCGGGATTTCACTCTAC
TCCAATCAACCCCGCCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTC
TTTATTTTTTGCCTTAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCT
CGATCCTCCAAAGCATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCC
CAACTTCTCCTGAACCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTC
CACATTAATTCTTCAGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCT
TTGTACAGGTGCAGAATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATG
CTCTTCAATGGGGCATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCC
TCCAGTAAGGCCATCCAAGGAGGTGTGGTAA back to top
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