jgi.p|Nanoce1779_2|589049, mRNA_4419 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589049
Unique Name	mRNA_4419
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2070
Alignment location	scaffold_10:536891..539056 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589135
Track	FilteredModels2
ProteinId	589049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:536891..539056 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589049	gene_4419	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589049	mRNA_4419-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4419	CDS_4419	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:536891..539056+
coding sequence from alignment at scaffold_10:536891..539056+

mRNA sequence

>mRNA_4419 ID=mRNA_4419|Name=jgi.p|Nanoce1779_2|589049|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT
TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC
CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT
TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC
TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG
CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG
CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG
CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC
GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA
GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT
TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC
TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA
GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT
TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA
CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT
TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC
TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGG
CTTCTCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACG
GGACAACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCT
ACAACGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAG
GTATTATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGC
GGTGATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATG
AACAGTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGG
GACAGGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGG
CGCGGACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCC
CCTTGCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACA
AACACTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAG
GGGGGATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTA
CAACAGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCA
ACACCTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGC
GAAAAAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCA
CTCCTAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCC
CCTACCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTC
CGATGATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAA
CAGTAAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCA
CTTCATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGA
GGACGAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGC
CGACGGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCC
TCTTCTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGA
ATACCGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACA
TGTGGGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGC
CATCCAATATTGCTTTCAGA

protein sequence of jgi.p|Nanoce1779_2|589049

>mRNA_4419-protein ID=mRNA_4419-protein|Name=jgi.p|Nanoce1779_2|589049|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MASSTASAMPAFFSSRPASDDEASARASSPASTPPYSFATNLLGAFGAVR
KKNVQTLKVLEELKTMVKNRASVEEAYSQQLTRVVANHTHGLRHLGEKLT
RKAGGGGLSEVEAAKEASLTASHSTFRECVETLKADMLNKAVQRKQLSAS
ILTDVFGPVEEIFNQLAAESKDLEDTISALAKEGRGLEARYRSTHKKHEQ
AVQLATTTSNFLLEQGHILPTVDIHALYRRHTATSRDNSPPPSSPFDLRK
EELSSMVAGSPRLLSGALTNIAKKDLTAWLLPSGKDRQQDLQSTARDNME
LAVLLRFACRDRYNELASFARTATHTLQKVLCQYQLCEERSVEELAVMLR
KQVVFESSCLANEQYEVQLMFKVIEAVDRDRDLEAFIHAHNVPFPGADVS
NTLQSLGLSLSSPLPAPPPPYEGAASTITNTAPCHSSSFDSSVLDRGDLP
NLSSPYPHVVPATTVLCLLRGGLSSSRTPTPPLPPFPSTLSSLRIAKKLS
PFPSICSLSMTSTPSSKSPSPLHLVSSSAPTSSSISSRTIVFPPPSDDSS
NSPAPTSAEASRTVKPPTGSVRMQSNHFPLHLGAFDTLKSGLDDSEDEDE
DEDKGFSSQHDKPTAVGIVETDIRRNDAPSSLLPLKEVRTADGGVEYRL*

mRNA from alignment at scaffold_10:536891..539056+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4419 ID=mRNA_4419|Name=jgi.p|Nanoce1779_2|589049|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at scaffold_10:536891..539056+ (Nannochloropsis oceanica)
CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT
TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC
CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT
TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC
TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG
CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG
CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG
CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC
GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA
GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT
TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC
TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA
GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT
TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA
CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT
TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC
TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACGTGAGTG
CATAATTAGGTTTGGGTCAAGCGTGCAGGATGGATATGGGTACCTCTCTG
TTCTCCTCACCCTCCTACCACCGCCATTCCACAAAATAGCGCCTGGCTTC
TCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGAC
AACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAA
CGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTAT
TATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTG
ATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACA
GTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACA
GGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCG
GACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTT
GCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACA
CTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGG
GATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAAC
AGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACAC
CTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAA
AAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCC
TAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTA
CCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGAT
GATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGT
AAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTC
ATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGAC
GAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGAC
GGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTT
CTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATAC
CGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACATGTG
GGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGCCATC
CAATATTGCTTTCAGA

Coding sequence (CDS) from alignment at scaffold_10:536891..539056+

>mRNA_4419 ID=mRNA_4419|Name=jgi.p|Nanoce1779_2|589049|organism=Nannochloropsis oceanica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_10:536891..539056+ (Nannochloropsis oceanica)
ATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTTTCAGCAGCCGCCC
CGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCCCCGGCCTCGACGC
CACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTTTGGGGCGGTCCGC
AAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGCTCAAGACCATGGT
CAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAGCAATTGACCCGCG
TCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGGCGAGAAACTAACA
CGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGGCGGCCAAGGAGGC
GAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGCGTGGAGACCTTAA
AGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCAGCTTTCGGCAAGT
ATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTTTCAACCAACTGGC
GGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCCTTGGCGAAAGAGG
GACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAAGAAACACGAGCAG
GCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTATTGGAACAAGGTCA
TATCCTCCCAACCGTGGACATACATGCACTCTATCGACGGCATACGGCCA
CGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTTTGACCTGAGGAAG
GAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGACTTCTCTCAGGTGC
CCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGGCTTCTCCCCTCCG
GCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGACAACATGGAA
TTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAACGAGCTTGC
CAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTATTATGTCAAT
ATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTGATGCTGCGG
AAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACAGTATGAGGT
TCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACAGGGATTTAG
AAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCGGACGTAAGC
AATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTTGCCTGCACC
ACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACACTGCACCCT
GTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGGGATCTGCCC
AACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAACAGTTCTCTG
CCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACACCTCCTCTTC
CACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAAAAACTTTCT
CCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCCTAGCAGTAA
GAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTACCTCCTCTT
CCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGATGATTCATCG
AACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGTAAAGCCGCC
AACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTCATCTCGGTG
CGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGACGAGGACGAG
GACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGACGGCAGTAGG
GATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTTCTCTTCTGC
CCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATACCGGTTGTAG
ATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTTTCAGCAGCCGCCC
CGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCCCCGGCCTCGACGC
CACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTTTGGGGCGGTCCGC
AAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGCTCAAGACCATGGT
CAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAGCAATTGACCCGCG
TCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGGCGAGAAACTAACA
CGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGGCGGCCAAGGAGGC
GAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGCGTGGAGACCTTAA
AGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCAGCTTTCGGCAAGT
ATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTTTCAACCAACTGGC
GGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCCTTGGCGAAAGAGG
GACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAAGAAACACGAGCAG
GCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTATTGGAACAAGGTCA
TATCCTCCCAACCGTGGACATACATGCACTCTATCGACGGCATACGGCCA
CGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTTTGACCTGAGGAAG
GAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGACTTCTCTCAGGTGC
CCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGGCTTCTCCCCTCCG
GCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGACAACATGGAA
TTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAACGAGCTTGC
CAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTATTATGTCAAT
ATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTGATGCTGCGG
AAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACAGTATGAGGT
TCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACAGGGATTTAG
AAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCGGACGTAAGC
AATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTTGCCTGCACC
ACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACACTGCACCCT
GTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGGGATCTGCCC
AACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAACAGTTCTCTG
CCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACACCTCCTCTTC
CACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAAAAACTTTCT
CCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCCTAGCAGTAA
GAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTACCTCCTCTT
CCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGATGATTCATCG
AACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGTAAAGCCGCC
AACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTCATCTCGGTG
CGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGACGAGGACGAG
GACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGACGGCAGTAGG
GATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTTCTCTTCTGC
CCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATACCGGTTGTAG

Synonyms

Publications