Properties
| Property Name | Value |
|---|
| TranscriptId | 639234 |
| Track | FilteredModels2 |
| ProteinId | 639148 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:533330..534645 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4417 ID=mRNA_4417|Name=jgi.p|Nanoce1779_2|639148|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
ATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCGAAGAGCG
TACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCAATGACCC
CAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTATGAGGAC
TTCTTGAAAAAATCAGGCGACCGAGATGTCGATATCCAGCCCTGGTCTCC
CGCCCCTTCATCCCAATTCAACGAGCACAGCAAATGCCAACTCCGTACGG
TCGTGACCAAGCACCCAGTCAAGACTCGAATGCCAGGAATCCCCAGCCAT
GTCAAAAGTACCAAAATCCAGACTTTATCTGAGGGAGAAGCAGGGTTGGG
AGGGAAGAAGAGCTTACCGGTTATCAAGGTCCATGAAACCAACGTCGTGG
AAGGCGTGCCATTTTCCGATCGTTTTTTTGTTGTGCTGGTATGGACGGTC
AAGTGGGGGGAAGATACAGCGGGTGGCAGCGGCAGCAGCAGTAAACCTCC
ATATCATTCGGAGAGAAGAAACTCCAAAGCCGACGGCAGCAAAGCGATAG
TACGGCTTACAGTGCACCAACACATCGTTTTCAGAAGGCCTTTTTGGCTA
GAGAGGGTAGTGGAGAAGGAGACAGCCAGCGAGACTTTGTCGACCCTTAA
ATTGTGGAGTCTCTTGGCACACCAGAAGGTTGCCGTGCCCGTCGACGGCA
AGTCGCCTGCACCCACGCCGATGAGAAAGGAAGGAGGGACGACGACAGGA
TTTAAATGTAGGCTACTTTCTGTCGCCAGGCATCTCTTGCTTACGGGATT
GTTGACATCACTCGTGGTATTGGTGACCAAAGGAGCTTCGTACGTGCCTG
AATTGGTCCATCGCAGCAGGCAGATCAAAAGCAAGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|639148 >mRNA_4417-protein ID=mRNA_4417-protein|Name=jgi.p|Nanoce1779_2|639148|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MTYLLSRSFVGADAEERTSAQVLLLDITLPPMTPKQYIDTFWHDAKFYED
FLKKSGDRDVDIQPWSPAPSSQFNEHSKCQLRTVVTKHPVKTRMPGIPSH
VKSTKIQTLSEGEAGLGGKKSLPVIKVHETNVVEGVPFSDRFFVVLVWTV
KWGEDTAGGSGSSSKPPYHSERRNSKADGSKAIVRLTVHQHIVFRRPFWL
ERVVEKETASETLSTLKLWSLLAHQKVAVPVDGKSPAPTPMRKEGGTTTG
FKCRLLSVARHLLLTGLLTSLVVLVTKGASYVPELVHRSRQIKSK* back to topmRNA from alignment at scaffold_10:533330..534645+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4417 ID=mRNA_4417|Name=jgi.p|Nanoce1779_2|639148|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at scaffold_10:533330..534645+ (Nannochloropsis oceanica)
ATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCGAAGAGCG
TACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCAATGACCC
CAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTATGAGGAC
TTCTTGAAAAAATCAGGTACGCCTCGGATTTAAGTTGCTCACAGACAGGA
TTTACATCGTCTTCTCTTTCTTCCCTTGAAGCTCTTTCTTCGTTTTGCTC
AGCGCGGCCATCCCTCCGTGCGTGTGTGTCGTGTGTGAAGGGAAAATGTG
TTATCTTTCACGGTAAAGTGAACGTATTACTTCTGGATTTGAAGCTTCGC
TTCCTGTTTTTAGGCTCCTTGTGCGACCCGGGAGCAGAATCGACCGTCTG
TCTCGTCCCATCCATACCTCACACAAGCATGTGGTCCTTTCATCACTTAC
CCTCCTCCTCCTATCTCGAAAATCACAAAAGAATAAATCGAGGCAGTCGC
CATGTTATTCATTGCATTTTATAAACGACAATGTTGGAATTCTGTCACGG
CGAATTAGATGCCTCAACTTTGACCCTTCTCTCCTCGGAAATAGGCGACC
GAGATGTCGATATCCAGCCCTGGTCTCCCGCCCCTTCATCCCAATTCAAC
GAGCACAGCAAATGCCAACTCCGTACGGTCGTGACCAAGCACCCAGTCAA
GACTCGAATGCCAGGAATCCCCAGCCATGTCAAAAGTACCAAAATCCAGA
CTTTATCTGAGGGAGAAGCAGGGTTGGGAGGGAAGAAGAGCTTACCGGTT
ATCAAGGTCCATGAAACCAACGTCGTGGAAGGCGTGCCATTTTCCGATCG
TTTTTTTGTTGTGCTGGTATGGACGGTCAAGTGGGGGGAAGATACAGCGG
GTGGCAGCGGCAGCAGCAGTAAACCTCCATATCATTCGGAGAGAAGAAAC
TCCAAAGCCGACGGCAGCAAAGCGATAGTACGGCTTACAGTGCACCAACA
CATCGTTTTCAGAAGGCCTTTTTGGCTAGAGAGGGTAGTGGAGAAGGAGA
CAGCCAGCGAGACTTTGTCGACCCTTAAATTGTGGAGTCTCTTGGCACAC
CAGAAGGTTGCCGTGCCCGTCGACGGCAAGTCGCCTGCACCCACGCCGAT
GAGAAAGGAAGGAGGGACGACGACAGGATTTAAATGTAGGCTACTTTCTG
TCGCCAGGCATCTCTTGCTTACGGGATTGTTGACATCACTCGTGGTATTG
GTGACCAAAGGAGCTTCGTACGTGCCTGAATTGGTCCATCGCAGCAGGCA
GATCAAAAGCAAGTAG back to topCoding sequence (CDS) from alignment at scaffold_10:533330..534645+ >mRNA_4417 ID=mRNA_4417|Name=jgi.p|Nanoce1779_2|639148|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_10:533330..534645+ (Nannochloropsis oceanica)
ATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCGAAGAGCG
TACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCAATGACCC
CAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTATGAGGAC
TTCTTGAAAAAATCAGGCGACCGAGATGTCGATATCCAGCCCTGGTCTCC
CGCCCCTTCATCCCAATTCAACGAGCACAGCAAATGCCAACTCCGTACGG
TCGTGACCAAGCACCCAGTCAAGACTCGAATGCCAGGAATCCCCAGCCAT
GTCAAAAGTACCAAAATCCAGACTTTATCTGAGGGAGAAGCAGGGTTGGG
AGGGAAGAAGAGCTTACCGGTTATCAAGGTCCATGAAACCAACGTCGTGG
AAGGCGTGCCATTTTCCGATCGTTTTTTTGTTGTGCTGGTATGGACGGTC
AAGTGGGGGGAAGATACAGCGGGTGGCAGCGGCAGCAGCAGTAAACCTCC
ATATCATTCGGAGAGAAGAAACTCCAAAGCCGACGGCAGCAAAGCGATAG
TACGGCTTACAGTGCACCAACACATCGTTTTCAGAAGGCCTTTTTGGCTA
GAGAGGGTAGTGGAGAAGGAGACAGCCAGCGAGACTTTGTCGACCCTTAA
ATTGTGGAGTCTCTTGGCACACCAGAAGGTTGCCGTGCCCGTCGACGGCA
AGTCGCCTGCACCCACGCCGATGAGAAAGGAAGGAGGGACGACGACAGGA
TTTAAATGTAGGCTACTTTCTGTCGCCAGGCATCTCTTGCTTACGGGATT
GTTGACATCACTCGTGGTATTGGTGACCAAAGGAGCTTCGTACGTGCCTG
AATTGGTCCATCGCAGCAGGCAGATCAAAAGCAAGTAGATGACCTACTTA
TTGTCAAGGAGCTTCGTCGGCGCAGACGCCGAAGAGCGTACCTCCGCCCA
AGTCCTCCTCCTCGACATCACCCTGCCCCCAATGACCCCAAAGCAATACA
TTGACACTTTTTGGCACGATGCAAAATTTTATGAGGACTTCTTGAAAAAA
TCAGGCGACCGAGATGTCGATATCCAGCCCTGGTCTCCCGCCCCTTCATC
CCAATTCAACGAGCACAGCAAATGCCAACTCCGTACGGTCGTGACCAAGC
ACCCAGTCAAGACTCGAATGCCAGGAATCCCCAGCCATGTCAAAAGTACC
AAAATCCAGACTTTATCTGAGGGAGAAGCAGGGTTGGGAGGGAAGAAGAG
CTTACCGGTTATCAAGGTCCATGAAACCAACGTCGTGGAAGGCGTGCCAT
TTTCCGATCGTTTTTTTGTTGTGCTGGTATGGACGGTCAAGTGGGGGGAA
GATACAGCGGGTGGCAGCGGCAGCAGCAGTAAACCTCCATATCATTCGGA
GAGAAGAAACTCCAAAGCCGACGGCAGCAAAGCGATAGTACGGCTTACAG
TGCACCAACACATCGTTTTCAGAAGGCCTTTTTGGCTAGAGAGGGTAGTG
GAGAAGGAGACAGCCAGCGAGACTTTGTCGACCCTTAAATTGTGGAGTCT
CTTGGCACACCAGAAGGTTGCCGTGCCCGTCGACGGCAAGTCGCCTGCAC
CCACGCCGATGAGAAAGGAAGGAGGGACGACGACAGGATTTAAATGTAGG
CTACTTTCTGTCGCCAGGCATCTCTTGCTTACGGGATTGTTGACATCACT
CGTGGTATTGGTGACCAAAGGAGCTTCGTACGTGCCTGAATTGGTCCATC
GCAGCAGGCAGATCAAAAGCAAGTAG back to top
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