jgi.p|Nanoce1779_2|23487, mRNA_4413 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|23487
Unique NamemRNA_4413
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length691
Alignment locationscaffold_10:526584..527274 +

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Properties
Property NameValue
TranscriptId23573
TrackFilteredModels2
ProteinId23487
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:526584..527274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|23487gene_4413Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|23487mRNA_4413-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4413CDS_4413Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4413 ID=mRNA_4413|Name=jgi.p|Nanoce1779_2|23487|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
GGGTGAATGCCCTGTCAAGTTATCGCTCAATGCACAATGAGCTGCTCGGA
GACAAGAGGAAGCCACGCAAGTACATGGGCAAAAACAAGCACCAGCACCT
CGACAACAACGATGAACTTAAGCACGCACAGCCTGTATGCTTCTGTGCAG
GCGAGAAGGATGTGGGTGAGGCGCGGCGTTGGTCAAAAGGAAGTGCATGA
AAAGGCTGCGTTTATTTGGCGGGAGCAAGCCGTTTATGTCTTCACTTTCT
TTATGTCCGCAGACACACATACTCACAACTCTTTCTTTTCGCTTGGCGTA
CTCTTCTCCGCCGGTCTCTCTCATGCTATCGCCGCTAACTCTCTTTGATG
ACATGCCCACCTTCTCATTCTCACCACACTTTATTTTTCTGCATCCCATG
ACTGCCAAACACAAATCCGTCGCTTCTCCCCACTGTAATATACTACACGG
CCATGTATGTCCGACTAACTCACTTCCTTGCCTTCTCCTCAATCTTTTAT
ACCACCAAACATTCTTTCGGCCCAACATCTGTCCACTGACTTTCTTATAC
TTCATCCTTTTACTTTATGTCGCGCCCTTCCTCCATATTTCCGCAAACTG
GGCACATATACTGATGTACACTCACTCTATGTCGCCGCTTTTTCGTCTCA
TGAATTGAATTCACTCTCATTATCCCTTCCGTCAGTCATCT
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protein sequence of jgi.p|Nanoce1779_2|23487

>mRNA_4413-protein ID=mRNA_4413-protein|Name=jgi.p|Nanoce1779_2|23487|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MKRLRLFGGSKPFMSSLSLCPQTHILTTLSFRLAYSSPPVSLMLSPLTLF
DDMPTFSFSPHFIFLHPMTAKHKSVASPHCNILHGHVCPTNSLPCLLLNL
LYHQTFFRPNICPLTFLYFILLLYVAPFLHISANWAHILMYTHSMSPLFR
LMN*
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mRNA from alignment at scaffold_10:526584..527274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4413 ID=mRNA_4413|Name=jgi.p|Nanoce1779_2|23487|organism=Nannochloropsis oceanica|type=mRNA|length=691bp|location=Sequence derived from alignment at scaffold_10:526584..527274+ (Nannochloropsis oceanica)
GGGTGAATGCCCTGTCAAGTTATCGCTCAATGCACAATGAGCTGCTCGGA
GACAAGAGGAAGCCACGCAAGTACATGGGCAAAAACAAGCACCAGCACCT
CGACAACAACGATGAACTTAAGCACGCACAGCCTGTATGCTTCTGTGCAG
GCGAGAAGGATGTGGGTGAGGCGCGGCGTTGGTCAAAAGGAAGTGCATGA
AAAGGCTGCGTTTATTTGGCGGGAGCAAGCCGTTTATGTCTTCACTTTCT
TTATGTCCGCAGACACACATACTCACAACTCTTTCTTTTCGCTTGGCGTA
CTCTTCTCCGCCGGTCTCTCTCATGCTATCGCCGCTAACTCTCTTTGATG
ACATGCCCACCTTCTCATTCTCACCACACTTTATTTTTCTGCATCCCATG
ACTGCCAAACACAAATCCGTCGCTTCTCCCCACTGTAATATACTACACGG
CCATGTATGTCCGACTAACTCACTTCCTTGCCTTCTCCTCAATCTTTTAT
ACCACCAAACATTCTTTCGGCCCAACATCTGTCCACTGACTTTCTTATAC
TTCATCCTTTTACTTTATGTCGCGCCCTTCCTCCATATTTCCGCAAACTG
GGCACATATACTGATGTACACTCACTCTATGTCGCCGCTTTTTCGTCTCA
TGAATTGAATTCACTCTCATTATCCCTTCCGTCAGTCATCT
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Coding sequence (CDS) from alignment at scaffold_10:526584..527274+

>mRNA_4413 ID=mRNA_4413|Name=jgi.p|Nanoce1779_2|23487|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_10:526584..527274+ (Nannochloropsis oceanica)
ATGAAAAGGCTGCGTTTATTTGGCGGGAGCAAGCCGTTTATGTCTTCACT
TTCTTTATGTCCGCAGACACACATACTCACAACTCTTTCTTTTCGCTTGG
CGTACTCTTCTCCGCCGGTCTCTCTCATGCTATCGCCGCTAACTCTCTTT
GATGACATGCCCACCTTCTCATTCTCACCACACTTTATTTTTCTGCATCC
CATGACTGCCAAACACAAATCCGTCGCTTCTCCCCACTGTAATATACTAC
ACGGCCATGTATGTCCGACTAACTCACTTCCTTGCCTTCTCCTCAATCTT
TTATACCACCAAACATTCTTTCGGCCCAACATCTGTCCACTGACTTTCTT
ATACTTCATCCTTTTACTTTATGTCGCGCCCTTCCTCCATATTTCCGCAA
ACTGGGCACATATACTGATGTACACTCACTCTATGTCGCCGCTTTTTCGT
CTCATGAATTGA
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Synonyms
Publications