jgi.p|Nanoce1779_2|639145, mRNA_4412 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639145
Unique Name	mRNA_4412
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2016
Alignment location	scaffold_10:524533..526548 -

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Properties


Property Name	Value
TranscriptId	639231
Track	FilteredModels2
ProteinId	639145

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:524533..526548 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639145	gene_4412	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4412	CDS_4412	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639145	mRNA_4412-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:524533..526548-
coding sequence from alignment at scaffold_10:524533..526548-

mRNA sequence

>mRNA_4412 ID=mRNA_4412|Name=jgi.p|Nanoce1779_2|639145|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATGGCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGC
GTTGGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGC
CTGCTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGC
TCCACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGC
GGTCTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCAC
AGAAAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGG
CTTGTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGC
CCACCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCAT
TATGTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAA
TCGACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAG
GCTGTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCG
GGCAAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCA
GATCCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAAT
GCTTGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACG
TGGCTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCA
AAGAGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGC
GCATGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAG
CCGCAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCA
GAAAGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGA
GGGAGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGG
ACGATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAA
ACGCAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTA
TGAGTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACAC
GAAGCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAG
CAGCAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCA
AGAATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATG
ATGCCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCA
GGAGGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACG
TTCTCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCAC
CCTCTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGAT
AGTCAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCA
GACGCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGG
AAGAGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATG
GTGCTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAA
GCGTCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGC
CTACTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACT
GCACGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATG
CAGGAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGG
GTCGGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGC
TCGCCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGG
GAGTGGAAGAGTGTGA

protein sequence of jgi.p|Nanoce1779_2|639145

>mRNA_4412-protein ID=mRNA_4412-protein|Name=jgi.p|Nanoce1779_2|639145|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MAKTMSTPWILPAVKAALGAEDSAGRVGASNNKPAGPSDHRPKVVQVVRG
STQHGYLEVSDKENKIAVFLTPDARQSFHEAMPQKSLSGLSTCMVKLEKW
LVSYLPLAVDSATGSLAHHLPQNTKQDAHTFAPLCLVATKFTVVLSERGQ
STYGNPRSINTITEIKRLYRELDPSALITKLATGQGLPRLPDSTGADALP
DPVDNQHPVTLTEVKAMLAQDAAYPERRIAGVNVATAAAAAAAAAAAVVA
KRAVGAVEVLGGAGNGAHAINGGAAAGQQMQTPAAAETGRAGAADAATVA
ERAGAIAAIASQAEDEEGEQQEEGEAEGKEIDEDDRLASQFGASPAREFE
TQRQEEEEEEEEEEESYESVPVLIPPPSPARSTRSAASIKATSPTRQMQQ
QQQEEEAEQQQQQEQRQESPSRRRRTVAAPVDDDAKEGKNEESKALSPKP
GGQEEEGKKEGEGISTRSPRAQILQAGPGSPHPPSPAQRTSLRRNKKQQD
SQAWAMQTQAFSQDFSQTQVDESQQEEEELEEEEEEEEEKEEEEEDELKM
VLRRPSVPFPSSPSPGKRPAPTVLAGGGGGGPSPTRVRLSAPTSAAAAAT
ARLYPAAKAAATAASACRSTSSSTPVDTSSLFGGRPTIWGLLGMLKPGGS
SPSRNFRKTGCSGGGGGSGRV*

mRNA from alignment at scaffold_10:524533..526548-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4412 ID=mRNA_4412|Name=jgi.p|Nanoce1779_2|639145|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_10:524533..526548- (Nannochloropsis oceanica)
ATGGCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGC
GTTGGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGC
CTGCTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGC
TCCACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGC
GGTCTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCAC
AGAAAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGG
CTTGTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGC
CCACCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCAT
TATGTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAA
TCGACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAG
GCTGTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCG
GGCAAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCA
GATCCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAAT
GCTTGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACG
TGGCTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCA
AAGAGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGC
GCATGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAG
CCGCAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCA
GAAAGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGA
GGGAGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGG
ACGATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAA
ACGCAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTA
TGAGTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACAC
GAAGCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAG
CAGCAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCA
AGAATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATG
ATGCCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCA
GGAGGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACG
TTCTCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCAC
CCTCTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGAT
AGTCAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCA
GACGCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGG
AAGAGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATG
GTGCTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAA
GCGTCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGC
CTACTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACT
GCACGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATG
CAGGAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGG
GTCGGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGC
TCGCCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGG
GAGTGGAAGAGTGTGA

Coding sequence (CDS) from alignment at scaffold_10:524533..526548-

>mRNA_4412 ID=mRNA_4412|Name=jgi.p|Nanoce1779_2|639145|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_10:524533..526548- (Nannochloropsis oceanica)
ATGGCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGC
GTTGGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGC
CTGCTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGC
TCCACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGC
GGTCTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCAC
AGAAAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGG
CTTGTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGC
CCACCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCAT
TATGTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAA
TCGACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAG
GCTGTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCG
GGCAAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCA
GATCCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAAT
GCTTGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACG
TGGCTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCA
AAGAGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGC
GCATGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAG
CCGCAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCA
GAAAGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGA
GGGAGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGG
ACGATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAA
ACGCAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTA
TGAGTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACAC
GAAGCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAG
CAGCAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCA
AGAATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATG
ATGCCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCA
GGAGGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACG
TTCTCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCAC
CCTCTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGAT
AGTCAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCA
GACGCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGG
AAGAGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATG
GTGCTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAA
GCGTCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGC
CTACTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACT
GCACGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATG
CAGGAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGG
GTCGGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGC
TCGCCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGG
GAGTGGAAGAGTGTGA

Synonyms

Publications