jgi.p|Nanoce1779_2|589024, mRNA_4411 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589024
Unique NamemRNA_4411
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1032
Alignment locationscaffold_10:522810..524108 +

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Properties
Property NameValue
TranscriptId589110
TrackFilteredModels2
ProteinId589024
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:522810..524108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589024gene_4411Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589024mRNA_4411-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4411CDS_4411Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4411 ID=mRNA_4411|Name=jgi.p|Nanoce1779_2|589024|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp
TGAACGGCTCCGCGGAGCCCTCCGCTGGCCAAAGAACCCCTCCCTCCTCC
TCATTCACCCTGGGAAGAACCTAGTCTCCCCATTGTCACGTGGTCAGTAC
AGGACAATGTTTGCATGGCTTTCAACAGGAGACGGGAGTGGAGAGAGTAT
GGATGGTGGGAGAGAAGCAAGGCACCACCACCTCTGCCTCCCTCCGTCCC
TTCCTCGCTCCCTCTTCTTCCGCGCCCAGCGTATGTACCTTGTCCTCACC
CAGACCTGCGCACGGTTACCCCCGTAAATTTGCCTGGTCACTGACAATGT
CTAAGCTCTGCGCTGGCTCTTTCCACTCACGTTTCACACCGCGCTTACCC
CTCTCTTTCTCATCTTCTCCACTAACTCGTTATTATCATCACAGCCATCA
TGACTGTCAAGCGCCGCAATCACGGGCGCAACAAGAAGGGCCGCGGCCAC
GTCAAGCGTGTGCGGTGCGCCAACACCGGCAAGGCCGTCCCCAAGGACAA
GGCGATCAAGCGGATGTTAGTGCGCTCCATCGTGGACCAGTCCTCTGCCC
GTGATATCAAGGAGGCGCGTGTGTTCGAGAACTACCAACTGCCCAAGCTT
TACATCAAGCAGTACTACTCCGTGGAGGCCGCCGTGCATCAACGCCTCGT
CCGTTCCCGCAGCAAGGAGGACCGACGAAAGCGAGAAGCGCCTGAGAACA
AGCGCCCCGGCGCTCGTTAAGACGATGCGCTTTCCTCAATATCTGGTGGA
AGGGCAGGCGGCAAGCGGGAGGGGGGAGGGCGGTCGTATCTGCCTTTTTC
TGGTCTCATTCTCTAAATTTAAAAAAGGAACGGCAAGACCATGGTGTAGT
TATGAGAGGCTGCGCCAAAGATGGTCCAAGAGAAAGGAAAGAAAAGGGTA
GAGTGGGAGGCATGCCCCATTTACCCTTGTGTTTGTCAGTCTCCATTTGA
CGACGGTCAAAACCTGAAAAGACTAGGAGAAAGCAAAACCTCAACTACAA
CGACAGGAAAAACAATTTTTTTTAATGGAAGC
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protein sequence of jgi.p|Nanoce1779_2|589024

>mRNA_4411-protein ID=mRNA_4411-protein|Name=jgi.p|Nanoce1779_2|589024|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSA
RDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPEN
KRPGAR*
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mRNA from alignment at scaffold_10:522810..524108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4411 ID=mRNA_4411|Name=jgi.p|Nanoce1779_2|589024|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at scaffold_10:522810..524108+ (Nannochloropsis oceanica)
TGAACGGCTCCGCGGAGCCCTCCGCTGGCCAAAGAACCCCTCCCTCCTCC
TCATTCACCCTGGGAAGAACCTAGTCTCCCCATTGTCACGTGGTCAGTAC
AGGACAATGTTTGCATGGCTTTCAACAGGAGACGGGAGTGGAGAGAGTAT
GGATGGTGGGAGAGAAGCAAGGCACCACCACCTCTGCCTCCCTCCGTCCC
TTCCTCGCTCCCTCTTCTTCCGCGCCCAGCGTATGTACCTTGTCCTCACC
CAGACCTGCGCACGGTTACCCCCGTAAATTTGCCTGGTCACTGACAATGT
CTAAGCTCTGCGCTGGCTCTTTCCACTCACGTTTCACACCGCGCTTACCC
CTCTCTTTCTCATCTTCTCCACTAACTCGTTATTATCATCACAGCCATCA
TGACTGTCAAGCGCCGCAATCACGGGCGCAACAAGAAGGGCCGCGGCCAC
GTCAAGCGTGTGCGGTAAGAAAGAGTGTGTGAAATGTGGAGTCGTTGGCT
GGTCTAGCGGATGGGTGGTCATGGTCGTGAGTCCAGCGTCGTGCTTGCCA
CAACGGAGCATGGTCAGCTTGTGTCTTTTCCTCAGAACCGGTGGTACCAA
TGACCTTGTGCGCGCGACGCTGCCTGCATCTCACTTAGTCCTGCAGAAAG
GACGGTACTTCTCCCATCCCGTGCTTTTGCAATGAACAAACCCAGCAATC
TCATGCACTCTCCCTCCCGACCCAACCCCAGGTGCGCCAACACCGGCAAG
GCCGTCCCCAAGGACAAGGCGATCAAGCGGATGTTAGTGCGCTCCATCGT
GGACCAGTCCTCTGCCCGTGATATCAAGGAGGCGCGTGTGTTCGAGAACT
ACCAACTGCCCAAGCTTTACATCAAGCAGTACTACTCCGTGGAGGCCGCC
GTGCATCAACGCCTCGTCCGTTCCCGCAGCAAGGAGGACCGACGAAAGCG
AGAAGCGCCTGAGAACAAGCGCCCCGGCGCTCGTTAAGACGATGCGCTTT
CCTCAATATCTGGTGGAAGGGCAGGCGGCAAGCGGGAGGGGGGAGGGCGG
TCGTATCTGCCTTTTTCTGGTCTCATTCTCTAAATTTAAAAAAGGAACGG
CAAGACCATGGTGTAGTTATGAGAGGCTGCGCCAAAGATGGTCCAAGAGA
AAGGAAAGAAAAGGGTAGAGTGGGAGGCATGCCCCATTTACCCTTGTGTT
TGTCAGTCTCCATTTGACGACGGTCAAAACCTGAAAAGACTAGGAGAAAG
CAAAACCTCAACTACAACGACAGGAAAAACAATTTTTTTTAATGGAAGC
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Coding sequence (CDS) from alignment at scaffold_10:522810..524108+

>mRNA_4411 ID=mRNA_4411|Name=jgi.p|Nanoce1779_2|589024|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_10:522810..524108+ (Nannochloropsis oceanica)
ATGACTGTCAAGCGCCGCAATCACGGGCGCAACAAGAAGGGCCGCGGCCA
CGTCAAGCGTGTGCGGTGCGCCAACACCGGCAAGGCCGTCCCCAAGGACA
AGGCGATCAAGCGGATGTTAGTGCGCTCCATCGTGGACCAGTCCTCTGCC
CGTGATATCAAGGAGGCGCGTGTGTTCGAGAACTACCAACTGCCCAAGCT
TTACATCAAGCAGTACTACTCCGTGGAGGCCGCCGTGCATCAACGCCTCG
TCCGTTCCCGCAGCAAGGAGGACCGACGAAAGCGAGAAGCGCCTGAGAAC
AAGCGCCCCGGCGCTCGTTAAATGACTGTCAAGCGCCGCAATCACGGGCG
CAACAAGAAGGGCCGCGGCCACGTCAAGCGTGTGCGGTGCGCCAACACCG
GCAAGGCCGTCCCCAAGGACAAGGCGATCAAGCGGATGTTAGTGCGCTCC
ATCGTGGACCAGTCCTCTGCCCGTGATATCAAGGAGGCGCGTGTGTTCGA
GAACTACCAACTGCCCAAGCTTTACATCAAGCAGTACTACTCCGTGGAGG
CCGCCGTGCATCAACGCCTCGTCCGTTCCCGCAGCAAGGAGGACCGACGA
AAGCGAGAAGCGCCTGAGAACAAGCGCCCCGGCGCTCGTTAA
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Synonyms
Publications