jgi.p|Nanoce1779_2|527962, mRNA_4410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527962
Unique NamemRNA_4410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_10:520237..521049 +

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Properties
Property NameValue
TranscriptId528048
TrackFilteredModels2
ProteinId527962
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:520237..521049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527962gene_4410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527962mRNA_4410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4410CDS_4410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4410 ID=mRNA_4410|Name=jgi.p|Nanoce1779_2|527962|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAAGTGGAGCTGC
AGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATCACGGCCCATG
CACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACAGGAGGGAGAC
ATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGCCGCCAGCAAA
CGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTTGCCGCCCAAG
CGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCTGGGGCAAAAT
AAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATGGGCGGGGGCC
GCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCCTTGATGTTCA
TGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGCCATGGGCGAG
ATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGGGTATGGAGGA
AAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAGCAAAGGGGAT
CTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCAAGGTTTCACT
GCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCGCGTCGTCGCC
TCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCAGTACAGCGTG
TCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGGAAGTGGTGCT
GTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGCCGGGAGCAGT
GCAAAAGGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|527962

>mRNA_4410-protein ID=mRNA_4410-protein|Name=jgi.p|Nanoce1779_2|527962|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MYVGLQIESPSLESGAAGVGDGGGGGETRITAHAPYELPSFEFALSQEGD
IELLLSFANASQLPPANAQLAIRFFELTRLAAQAHVQSKLRAVAAELGQN
KEKVLGALLFSCNGRGPRRFMDTAHSNFDALMFMSHFPDTPLSGIYAMGE
IGPQATYVDDDEEGMEERGVAVASDKEEVEQRGSILRNSQSGSCALQGFT
AVFALLVTPQRSTASSPLLMVLNTEGLAVAVQRVLEHRGIGGFGGKGSGA
VKSGGGGGNVNGTPGAVQKA*
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mRNA from alignment at scaffold_10:520237..521049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4410 ID=mRNA_4410|Name=jgi.p|Nanoce1779_2|527962|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_10:520237..521049+ (Nannochloropsis oceanica)
ATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAAGTGGAGCTGC
AGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATCACGGCCCATG
CACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACAGGAGGGAGAC
ATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGCCGCCAGCAAA
CGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTTGCCGCCCAAG
CGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCTGGGGCAAAAT
AAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATGGGCGGGGGCC
GCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCCTTGATGTTCA
TGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGCCATGGGCGAG
ATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGGGTATGGAGGA
AAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAGCAAAGGGGAT
CTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCAAGGTTTCACT
GCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCGCGTCGTCGCC
TCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCAGTACAGCGTG
TCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGGAAGTGGTGCT
GTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGCCGGGAGCAGT
GCAAAAGGCTTGA
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Coding sequence (CDS) from alignment at scaffold_10:520237..521049+

>mRNA_4410 ID=mRNA_4410|Name=jgi.p|Nanoce1779_2|527962|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_10:520237..521049+ (Nannochloropsis oceanica)
ATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAAGTGGAGCTGC
AGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATCACGGCCCATG
CACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACAGGAGGGAGAC
ATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGCCGCCAGCAAA
CGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTTGCCGCCCAAG
CGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCTGGGGCAAAAT
AAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATGGGCGGGGGCC
GCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCCTTGATGTTCA
TGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGCCATGGGCGAG
ATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGGGTATGGAGGA
AAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAGCAAAGGGGAT
CTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCAAGGTTTCACT
GCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCGCGTCGTCGCC
TCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCAGTACAGCGTG
TCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGGAAGTGGTGCT
GTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGCCGGGAGCAGT
GCAAAAGGCTTGA
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Synonyms
Publications