jgi.p|Nanoce1779_2|577335, mRNA_441 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577335
Unique Name	mRNA_441
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1377
Alignment location	scaffold_3:1090025..1091422 +

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Properties


Property Name	Value
TranscriptId	577421
Track	FilteredModels2
ProteinId	577335

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1090025..1091422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577335	gene_441	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577335	mRNA_441-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_441	CDS_441	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1090025..1091422+
coding sequence from alignment at scaffold_3:1090025..1091422+

mRNA sequence

>mRNA_441 ID=mRNA_441|Name=jgi.p|Nanoce1779_2|577335|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp
CCTCCTCCTCCTCCTCTTTTTCCTCCTCGCGGGGGGCCGCTCCTCCTCTT
CGTCCTCACCGCGCTACTAGTCCGTTGTCGCAGCTTATGGGAGGAATAGG
GCTAGGCGGGTTGGCCAGTGCAGGGAGCAATGCTCCTCCGGAGAGCTCCA
CGCATCGAGGGCCTGTGTTATGTCTGGATGTCGATGCGGCGGGAAGTGTG
GGTGTGTCGGGGGGTGCGGATAAGCTGCTGGTGGTATACAGCTTGTTGCA
ACGCTCCAGGATTACAAGTTTTTCGGGGCACACGGCGCCAGTGACATGTG
TGAAGATTTTTAGGGACCGCTCCAATGAACCTTTGGTGGCTTCGGGATCT
CTGGACTCGACGTTACGGATATGGAAACTGGGTGGAGGTGGTGGGGAAGG
AGGAGGAGGCGAGTTTGGTGGGACGGGAGCGACGGGATTGTTATCGAGCT
TCACGACTGCGAAGGACGTGAGGCATGTGCTGACGGGGCATGGGAATGGA
ATCATGTGCCTGGATAAGAGCGAGGAATTGGAGGTGTTGGCAACGGGCGC
GAGGGACCGAACGGTGAAGATTTGGAATGTCACGCAAGGGAGGAACACGG
CCACGCTGGTAGGGCACACAGGGGTCGTGTCCAGCTTGCGTTTCATGGAC
GAAAGCCAGGGCCACCGTATCTTGAGTGCGGGCCAGGATCGGAACATGAT
TCTGTGGGACTCGGTCCGTGGGGCGTGTTTGAGGGTATTCCGGGGGCATG
AAAGCTGGATTCGGCAGGTGGAGGCTTGGGGTAGGGATTTGGCCGTTACC
GCGAGCAACGACCGAACGTTGCGACTGTGGGATTTACGGGTTCATAATTG
TGTGCAGAAAATGGCGGAGCACAAGGGAGCGGTGACGTGTTTGCAGGTGG
CGGATGAGCAGGACGCCCCTGTTTTGTTTAGCGGTTCGACGGACGCTACG
GTCAAGGTGTGGGACATAAGGGCGGATGGAGGGAGGTCTATGGCCACGTT
GGAAGGGCACTCGGAGGCAGTGACGGGCTTGGCGCTCCAGCAGCAGCAGC
AGCAGCAGCAGGCACCGTGGTCGAAAAGTAAGAATGGTGGAGACGGAGGA
GGGGGGGCGAGGAAATTAGTGTCGGTGGGGGAGGATAAGAGGGTGGTGGA
GTGGGACGTGTGGTCAGGCGCCTTGTTGCAGTCTAGAATGGGGCATTCGG
ACGGGATAAGCTGTGTGCAAGTGAGTAGGAAAGGGATGATTGTCACGGGG
AGTTGGGACGCGTCGGTGCGTCTCTGGGAAGGCACGTCGATGCCGACTTC
AGGGAGGGAGGGAGGGAGGAAGTAAGGGAGGGGAGGAGTAGAGAAAGGAG
ATTGAAAGTGGATGGTAGGGTGGATCA

protein sequence of jgi.p|Nanoce1779_2|577335

>mRNA_441-protein ID=mRNA_441-protein|Name=jgi.p|Nanoce1779_2|577335|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGGIGLGGLASAGSNAPPESSTHRGPVLCLDVDAAGSVGVSGGADKLLVV
YSLLQRSRITSFSGHTAPVTCVKIFRDRSNEPLVASGSLDSTLRIWKLGG
GGGEGGGGEFGGTGATGLLSSFTTAKDVRHVLTGHGNGIMCLDKSEELEV
LATGARDRTVKIWNVTQGRNTATLVGHTGVVSSLRFMDESQGHRILSAGQ
DRNMILWDSVRGACLRVFRGHESWIRQVEAWGRDLAVTASNDRTLRLWDL
RVHNCVQKMAEHKGAVTCLQVADEQDAPVLFSGSTDATVKVWDIRADGGR
SMATLEGHSEAVTGLALQQQQQQQQAPWSKSKNGGDGGGGARKLVSVGED
KRVVEWDVWSGALLQSRMGHSDGISCVQVSRKGMIVTGSWDASVRLWEGT
SMPTSGREGGRK*

mRNA from alignment at scaffold_3:1090025..1091422+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_441 ID=mRNA_441|Name=jgi.p|Nanoce1779_2|577335|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at scaffold_3:1090025..1091422+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCTTTTTCCTCCTCGCGGGGGGCCGCTCCTCCTCTT
CGTCCTCACCGCGCTACTAGTCCGTTGTCGCAGCTTATGGGAGGAATAGG
GCTAGGCGGGTTGGCCAGTGCAGGGAGCAATGCTCCTCCGGAGAGCTCCA
CGCATCGAGGGCCTGTGTTATGTCTGGATGTCGATGCGGCGGGAAGTGTG
GGTGTGTCGGGGGGTGCGGATAAGCTGCTGGTGGTATACAGCTTGTTGCA
ACGCTCCAGGATTACAAGTTTTTCGGGGCACACGGCGCCAGTGACATGTG
TGAAGATTTTTAGGGACCGCTCCAATGAACCTTTGGTGGCTTCGGGATCT
CTGGACTCGACGTTACGGATATGGAAACTGGGTGGAGGTGGTGGGGAAGG
AGGAGGAGGCGAGTTTGGTGGGACGGGAGCGACGGGATTGTTATCGAGCT
TCACGACTGCGAAGGACGTGAGGCATGTGCTGACGGGGCATGGGAATGGA
ATCATGTGCCTGGATAAGAGCGAGGAATTGGAGGTGTTGGCAACGGGCGC
GAGGGACCGAACGGTGAAGATTTGGAATGTCACGCAAGGGAGGAACACGG
CCACGCTGGTAGGGCACACAGGGGTCGTGTCCAGCTTGCGTTTCATGGAC
GAAAGCCAGGGCCACCGTATCTTGAGTGCGGGCCAGGATCGGAACATGAT
TCTGTGGGACTCGGTCCGTGGGGCGTGTTTGAGGGTATTCCGGGGGCATG
AAAGCTGGATTCGGCAGGTGGAGGCTTGGGGTAGGGATTTGGCCGTTACC
GCGAGCAACGACCGAACGTTGCGACTGTGGGATTTACGGGTTCATAATTG
TGTGCAGAAAATGGCGGAGCACAAGGGAGCGGTGACGTGTTTGCAGGTGG
CGGATGAGCAGGACGCCCCTGTTTTGTTTAGCGGTTCGACGGACGCTACG
GTCAAGGTGTGGGACATAAGGGCGGATGGAGGGAGGTCTATGGCCACGTT
GGAAGGGCACTCGGAGGCAGTGACGGGCTTGGCGCTCCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCACCGTGGTCGAAAAGT
AAGAATGGTGGAGACGGAGGAGGGGGGGCGAGGAAATTAGTGTCGGTGGG
GGAGGATAAGAGGGTGGTGGAGTGGGACGTGTGGTCAGGCGCCTTGTTGC
AGTCTAGAATGGGGCATTCGGACGGGATAAGCTGTGTGCAAGTGAGTAGG
AAAGGGATGATTGTCACGGGGAGTTGGGACGCGTCGGTGCGTCTCTGGGA
AGGCACGTCGATGCCGACTTCAGGGAGGGAGGGAGGGAGGAAGTAAGGGA
GGGGAGGAGTAGAGAAAGGAGATTGAAAGTGGATGGTAGGGTGGATCA

Coding sequence (CDS) from alignment at scaffold_3:1090025..1091422+

>mRNA_441 ID=mRNA_441|Name=jgi.p|Nanoce1779_2|577335|organism=Nannochloropsis oceanica|type=CDS|length=2478bp|location=Sequence derived from alignment at scaffold_3:1090025..1091422+ (Nannochloropsis oceanica)
ATGGGAGGAATAGGGCTAGGCGGGTTGGCCAGTGCAGGGAGCAATGCTCC
TCCGGAGAGCTCCACGCATCGAGGGCCTGTGTTATGTCTGGATGTCGATG
CGGCGGGAAGTGTGGGTGTGTCGGGGGGTGCGGATAAGCTGCTGGTGGTA
TACAGCTTGTTGCAACGCTCCAGGATTACAAGTTTTTCGGGGCACACGGC
GCCAGTGACATGTGTGAAGATTTTTAGGGACCGCTCCAATGAACCTTTGG
TGGCTTCGGGATCTCTGGACTCGACGTTACGGATATGGAAACTGGGTGGA
GGTGGTGGGGAAGGAGGAGGAGGCGAGTTTGGTGGGACGGGAGCGACGGG
ATTGTTATCGAGCTTCACGACTGCGAAGGACGTGAGGCATGTGCTGACGG
GGCATGGGAATGGAATCATGTGCCTGGATAAGAGCGAGGAATTGGAGGTG
TTGGCAACGGGCGCGAGGGACCGAACGGTGAAGATTTGGAATGTCACGCA
AGGGAGGAACACGGCCACGCTGGTAGGGCACACAGGGGTCGTGTCCAGCT
TGCGTTTCATGGACGAAAGCCAGGGCCACCGTATCTTGAGTGCGGGCCAG
GATCGGAACATGATTCTGTGGGACTCGGTCCGTGGGGCGTGTTTGAGGGT
ATTCCGGGGGCATGAAAGCTGGATTCGGCAGGTGGAGGCTTGGGGTAGGG
ATTTGGCCGTTACCGCGAGCAACGACCGAACGTTGCGACTGTGGGATTTA
CGGGTTCATAATTGTGTGCAGAAAATGGCGGAGCACAAGGGAGCGGTGAC
GTGTTTGCAGGTGGCGGATGAGCAGGACGCCCCTGTTTTGTTTAGCGGTT
CGACGGACGCTACGGTCAAGGTGTGGGACATAAGGGCGGATGGAGGGAGG
TCTATGGCCACGTTGGAAGGGCACTCGGAGGCAGTGACGGGCTTGGCGCT
CCAGCAGCAGCAGCAGCAGCAGCAGGCACCGTGGTCGAAAAGTAAGAATG
GTGGAGACGGAGGAGGGGGGGCGAGGAAATTAGTGTCGGTGGGGGAGGAT
AAGAGGGTGGTGGAGTGGGACGTGTGGTCAGGCGCCTTGTTGCAGTCTAG
AATGGGGCATTCGGACGGGATAAGCTGTGTGCAAGTGAGTAGGAAAGGGA
TGATTGTCACGGGGAGTTGGGACGCGTCGGTGCGTCTCTGGGAAGGCACG
TCGATGCCGACTTCAGGGAGGGAGGGAGGGAGGAAGTAAATGGGAGGAAT
AGGGCTAGGCGGGTTGGCCAGTGCAGGGAGCAATGCTCCTCCGGAGAGCT
CCACGCATCGAGGGCCTGTGTTATGTCTGGATGTCGATGCGGCGGGAAGT
GTGGGTGTGTCGGGGGGTGCGGATAAGCTGCTGGTGGTATACAGCTTGTT
GCAACGCTCCAGGATTACAAGTTTTTCGGGGCACACGGCGCCAGTGACAT
GTGTGAAGATTTTTAGGGACCGCTCCAATGAACCTTTGGTGGCTTCGGGA
TCTCTGGACTCGACGTTACGGATATGGAAACTGGGTGGAGGTGGTGGGGA
AGGAGGAGGAGGCGAGTTTGGTGGGACGGGAGCGACGGGATTGTTATCGA
GCTTCACGACTGCGAAGGACGTGAGGCATGTGCTGACGGGGCATGGGAAT
GGAATCATGTGCCTGGATAAGAGCGAGGAATTGGAGGTGTTGGCAACGGG
CGCGAGGGACCGAACGGTGAAGATTTGGAATGTCACGCAAGGGAGGAACA
CGGCCACGCTGGTAGGGCACACAGGGGTCGTGTCCAGCTTGCGTTTCATG
GACGAAAGCCAGGGCCACCGTATCTTGAGTGCGGGCCAGGATCGGAACAT
GATTCTGTGGGACTCGGTCCGTGGGGCGTGTTTGAGGGTATTCCGGGGGC
ATGAAAGCTGGATTCGGCAGGTGGAGGCTTGGGGTAGGGATTTGGCCGTT
ACCGCGAGCAACGACCGAACGTTGCGACTGTGGGATTTACGGGTTCATAA
TTGTGTGCAGAAAATGGCGGAGCACAAGGGAGCGGTGACGTGTTTGCAGG
TGGCGGATGAGCAGGACGCCCCTGTTTTGTTTAGCGGTTCGACGGACGCT
ACGGTCAAGGTGTGGGACATAAGGGCGGATGGAGGGAGGTCTATGGCCAC
GTTGGAAGGGCACTCGGAGGCAGTGACGGGCTTGGCGCTCCAGCAGCAGC
AGCAGCAGCAGCAGGCACCGTGGTCGAAAAGTAAGAATGGTGGAGACGGA
GGAGGGGGGGCGAGGAAATTAGTGTCGGTGGGGGAGGATAAGAGGGTGGT
GGAGTGGGACGTGTGGTCAGGCGCCTTGTTGCAGTCTAGAATGGGGCATT
CGGACGGGATAAGCTGTGTGCAAGTGAGTAGGAAAGGGATGATTGTCACG
GGGAGTTGGGACGCGTCGGTGCGTCTCTGGGAAGGCACGTCGATGCCGAC
TTCAGGGAGGGAGGGAGGGAGGAAGTAA

Synonyms

Publications