jgi.p|Nanoce1779_2|589013, mRNA_4408 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589013
Unique NamemRNA_4408
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1247
Alignment locationscaffold_10:513139..514385 -

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Properties
Property NameValue
TranscriptId589099
TrackFilteredModels2
ProteinId589013
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:513139..514385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589013gene_4408Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589013mRNA_4408-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4408CDS_4408Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4408 ID=mRNA_4408|Name=jgi.p|Nanoce1779_2|589013|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
ACAGCCCTCTCGTGACCGCCCACCCTTCACACAATCGACCACGACAAACT
GGCCACCCGCCGCTTTGACCGCCGATGCTTTGATCGCCGGTGTGTGTGCT
TCCTCTTCCTCCATCTTTTTCTTCAACTCTTTGCCGCTGCCCGGGTGCCT
GCGTTTTTTGTTGGCAGCAGTAAGCCCCCTCTCCATTTTGCCTCCCGGCG
CGCACGCAAGACGCAAGCCGTGTGCATGCGTGAACCACCGTCCCCACAGG
AGGATAGCGCAGCCCTTATGTGTACATCATCGAACCAGGAGCAGGGAGAT
GACTGGAAAGCAACAACGATCGCGATGATGGAGGGACTAGATTTGGAGGA
GGAAGACGTCAACCCCAGACGTTCCCCGGCGGAACGAAAGCGGCTGCGCA
ACTTACAAAAGAGGCCTGGGTGGTACCGCCGTGTCTCGCGGTGGGTGGGT
AAGGGCACGAAAAAGCGCATCCGAGAGCTTTGGCCACGGTACGGGATAGA
GCCTCCGGGCTGGCAAGTTAAGATGGACATTCCGGCCCTCTTTGCGCCGG
ACCGCGAGGTGCGAACGGTGGTGGTAGATGTGGGGTTTGGAGACGGGGCA
ACCCTTGTGACCAAGGCCTTGGAGCTACAAGAATTAGCGCCCGAAGTGGG
ATTCATGGGCTGTGAGTGGCATTCTGCCAGTGTTGGGGGAGCCTTGACGA
GGATGAATGAAACGGCGGTGGAAAATGTGCGAATGTTGCGTGGTGATTTC
CTGCACCACTTACGGGCTGGTTGGTTCGCACCCGGGGCTTTAGACGAGGT
TTGCATCTTTTTCCCGGACCCGTGGCCAAGGCCTGAAGATCACGAGCGGC
GGGTCATAAATGCTGTGTCGGTGGGACATTTGGCGGGGTGTGTGAAGCCT
GGAGGGTTTCTACATGTCGCAACCGACGTGCGGGATTACGCAGCGTGGGT
TGGGAAGGTGATGGAAGGAGATGGGGGCAATTGGGAGGCATGTGCTGTCC
CGAAGGAGAGTGTTTTGTACCGAAGTCCGTCCCAGGATGGGGTGGAGGAC
GGGCCGCATTATCATCACGGATTGGAGGAGGTGGAGGCGATATACGGGTT
GCTTGAGGCACGCCCACGGTGGCGGCCTTTGACGAGGTATGAAAGTCGAG
GAATTCACGAATTAGAGCATAAGATTTACGATTTGTGTTACCGACGGAAG
TATATACCGGGAGAAGAATCAGCATGACAGTTGAACGGAAAAAGAAA
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protein sequence of jgi.p|Nanoce1779_2|589013

>mRNA_4408-protein ID=mRNA_4408-protein|Name=jgi.p|Nanoce1779_2|589013|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MREPPSPQEDSAALMCTSSNQEQGDDWKATTIAMMEGLDLEEEDVNPRRS
PAERKRLRNLQKRPGWYRRVSRWVGKGTKKRIRELWPRYGIEPPGWQVKM
DIPALFAPDREVRTVVVDVGFGDGATLVTKALELQELAPEVGFMGCEWHS
ASVGGALTRMNETAVENVRMLRGDFLHHLRAGWFAPGALDEVCIFFPDPW
PRPEDHERRVINAVSVGHLAGCVKPGGFLHVATDVRDYAAWVGKVMEGDG
GNWEACAVPKESVLYRSPSQDGVEDGPHYHHGLEEVEAIYGLLEARPRWR
PLTRYESRGIHELEHKIYDLCYRRKYIPGEESA*
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mRNA from alignment at scaffold_10:513139..514385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4408 ID=mRNA_4408|Name=jgi.p|Nanoce1779_2|589013|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_10:513139..514385- (Nannochloropsis oceanica)
ACAGCCCTCTCGTGACCGCCCACCCTTCACACAATCGACCACGACAAACT
GGCCACCCGCCGCTTTGACCGCCGATGCTTTGATCGCCGGTGTGTGTGCT
TCCTCTTCCTCCATCTTTTTCTTCAACTCTTTGCCGCTGCCCGGGTGCCT
GCGTTTTTTGTTGGCAGCAGTAAGCCCCCTCTCCATTTTGCCTCCCGGCG
CGCACGCAAGACGCAAGCCGTGTGCATGCGTGAACCACCGTCCCCACAGG
AGGATAGCGCAGCCCTTATGTGTACATCATCGAACCAGGAGCAGGGAGAT
GACTGGAAAGCAACAACGATCGCGATGATGGAGGGACTAGATTTGGAGGA
GGAAGACGTCAACCCCAGACGTTCCCCGGCGGAACGAAAGCGGCTGCGCA
ACTTACAAAAGAGGCCTGGGTGGTACCGCCGTGTCTCGCGGTGGGTGGGT
AAGGGCACGAAAAAGCGCATCCGAGAGCTTTGGCCACGGTACGGGATAGA
GCCTCCGGGCTGGCAAGTTAAGATGGACATTCCGGCCCTCTTTGCGCCGG
ACCGCGAGGTGCGAACGGTGGTGGTAGATGTGGGGTTTGGAGACGGGGCA
ACCCTTGTGACCAAGGCCTTGGAGCTACAAGAATTAGCGCCCGAAGTGGG
ATTCATGGGCTGTGAGTGGCATTCTGCCAGTGTTGGGGGAGCCTTGACGA
GGATGAATGAAACGGCGGTGGAAAATGTGCGAATGTTGCGTGGTGATTTC
CTGCACCACTTACGGGCTGGTTGGTTCGCACCCGGGGCTTTAGACGAGGT
TTGCATCTTTTTCCCGGACCCGTGGCCAAGGCCTGAAGATCACGAGCGGC
GGGTCATAAATGCTGTGTCGGTGGGACATTTGGCGGGGTGTGTGAAGCCT
GGAGGGTTTCTACATGTCGCAACCGACGTGCGGGATTACGCAGCGTGGGT
TGGGAAGGTGATGGAAGGAGATGGGGGCAATTGGGAGGCATGTGCTGTCC
CGAAGGAGAGTGTTTTGTACCGAAGTCCGTCCCAGGATGGGGTGGAGGAC
GGGCCGCATTATCATCACGGATTGGAGGAGGTGGAGGCGATATACGGGTT
GCTTGAGGCACGCCCACGGTGGCGGCCTTTGACGAGGTATGAAAGTCGAG
GAATTCACGAATTAGAGCATAAGATTTACGATTTGTGTTACCGACGGAAG
TATATACCGGGAGAAGAATCAGCATGACAGTTGAACGGAAAAAGAAA
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Coding sequence (CDS) from alignment at scaffold_10:513139..514385-

>mRNA_4408 ID=mRNA_4408|Name=jgi.p|Nanoce1779_2|589013|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_10:513139..514385- (Nannochloropsis oceanica)
ATGCGTGAACCACCGTCCCCACAGGAGGATAGCGCAGCCCTTATGTGTAC
ATCATCGAACCAGGAGCAGGGAGATGACTGGAAAGCAACAACGATCGCGA
TGATGGAGGGACTAGATTTGGAGGAGGAAGACGTCAACCCCAGACGTTCC
CCGGCGGAACGAAAGCGGCTGCGCAACTTACAAAAGAGGCCTGGGTGGTA
CCGCCGTGTCTCGCGGTGGGTGGGTAAGGGCACGAAAAAGCGCATCCGAG
AGCTTTGGCCACGGTACGGGATAGAGCCTCCGGGCTGGCAAGTTAAGATG
GACATTCCGGCCCTCTTTGCGCCGGACCGCGAGGTGCGAACGGTGGTGGT
AGATGTGGGGTTTGGAGACGGGGCAACCCTTGTGACCAAGGCCTTGGAGC
TACAAGAATTAGCGCCCGAAGTGGGATTCATGGGCTGTGAGTGGCATTCT
GCCAGTGTTGGGGGAGCCTTGACGAGGATGAATGAAACGGCGGTGGAAAA
TGTGCGAATGTTGCGTGGTGATTTCCTGCACCACTTACGGGCTGGTTGGT
TCGCACCCGGGGCTTTAGACGAGGTTTGCATCTTTTTCCCGGACCCGTGG
CCAAGGCCTGAAGATCACGAGCGGCGGGTCATAAATGCTGTGTCGGTGGG
ACATTTGGCGGGGTGTGTGAAGCCTGGAGGGTTTCTACATGTCGCAACCG
ACGTGCGGGATTACGCAGCGTGGGTTGGGAAGGTGATGGAAGGAGATGGG
GGCAATTGGGAGGCATGTGCTGTCCCGAAGGAGAGTGTTTTGTACCGAAG
TCCGTCCCAGGATGGGGTGGAGGACGGGCCGCATTATCATCACGGATTGG
AGGAGGTGGAGGCGATATACGGGTTGCTTGAGGCACGCCCACGGTGGCGG
CCTTTGACGAGGTATGAAAGTCGAGGAATTCACGAATTAGAGCATAAGAT
TTACGATTTGTGTTACCGACGGAAGTATATACCGGGAGAAGAATCAGCAT
GA
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Synonyms
Publications