jgi.p|Nanoce1779_2|23444, mRNA_4407 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|23444
Unique NamemRNA_4407
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length608
Alignment locationscaffold_10:512413..513020 +

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Properties
Property NameValue
TranscriptId23530
TrackFilteredModels2
ProteinId23444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:512413..513020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|23444gene_4407Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|23444mRNA_4407-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4407CDS_4407Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4407 ID=mRNA_4407|Name=jgi.p|Nanoce1779_2|23444|organism=Nannochloropsis oceanica|type=mRNA|length=608bp
ATGAGGAGGTGGAGGAAAATGAAACCATTAAATTATTATGTTTGTTACAC
TGTCTTTTGATGTATATATTCTTTCAAAAATGGGTTTGGTGTTTATCCAT
ATTTGTGCGTGTACGTGTGAATGTGCACATTTGTGTTATACTCATTTCTC
TTCTTGTCACTCCAGACTCGCAGTTGCAGGGGCCCGAAAAAAGTAGGGAG
GTGGGGAAGAGGCAAACCAAGAGATACAGATAGATCGCGAGATATTGTTT
GTAATGATAATGGTATAATAACGAATAACAGCAAGAACGACAAGAGCGAC
AACAACGACAACAACAATGACTACTACTTATATTACTATCACTACTACTA
CCACCAAAAGCAGAAAAAGGAGATTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGTAAAAAGAGAAAGAAAGAAAGGAGGCGAGAGGAACAATGTG
TACCTTTATATACTGAATTGATAGGGGTCGAGATGACTTTTCCAAGAGAG
AACAAGTAGAAAAATAAGAAGAAGAGCAGCAGTAGCAACACGCAAGAAGC
TGAACTCGAAAACAGAGTAGAACGAACACCATTTAGGGTGTAATCTTTCT
TGAAATTT
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protein sequence of jgi.p|Nanoce1779_2|23444

>mRNA_4407-protein ID=mRNA_4407-protein|Name=jgi.p|Nanoce1779_2|23444|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MCTFVLYSFLFLSLQTRSCRGPKKVGRWGRGKPRDTDRSRDIVCNDNGII
TNNSKNDKSDNNDNNNDYYLYYYHYYYHQKQKKEILKKKKKKKKKKVKRE
RKKGGERNNVYLYILN*
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mRNA from alignment at scaffold_10:512413..513020+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4407 ID=mRNA_4407|Name=jgi.p|Nanoce1779_2|23444|organism=Nannochloropsis oceanica|type=mRNA|length=608bp|location=Sequence derived from alignment at scaffold_10:512413..513020+ (Nannochloropsis oceanica)
ATGAGGAGGTGGAGGAAAATGAAACCATTAAATTATTATGTTTGTTACAC
TGTCTTTTGATGTATATATTCTTTCAAAAATGGGTTTGGTGTTTATCCAT
ATTTGTGCGTGTACGTGTGAATGTGCACATTTGTGTTATACTCATTTCTC
TTCTTGTCACTCCAGACTCGCAGTTGCAGGGGCCCGAAAAAAGTAGGGAG
GTGGGGAAGAGGCAAACCAAGAGATACAGATAGATCGCGAGATATTGTTT
GTAATGATAATGGTATAATAACGAATAACAGCAAGAACGACAAGAGCGAC
AACAACGACAACAACAATGACTACTACTTATATTACTATCACTACTACTA
CCACCAAAAGCAGAAAAAGGAGATTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGTAAAAAGAGAAAGAAAGAAAGGAGGCGAGAGGAACAATGTG
TACCTTTATATACTGAATTGATAGGGGTCGAGATGACTTTTCCAAGAGAG
AACAAGTAGAAAAATAAGAAGAAGAGCAGCAGTAGCAACACGCAAGAAGC
TGAACTCGAAAACAGAGTAGAACGAACACCATTTAGGGTGTAATCTTTCT
TGAAATTT
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Coding sequence (CDS) from alignment at scaffold_10:512413..513020+

>mRNA_4407 ID=mRNA_4407|Name=jgi.p|Nanoce1779_2|23444|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_10:512413..513020+ (Nannochloropsis oceanica)
ATGTGCACATTTGTGTTATACTCATTTCTCTTCTTGTCACTCCAGACTCG
CAGTTGCAGGGGCCCGAAAAAAGTAGGGAGGTGGGGAAGAGGCAAACCAA
GAGATACAGATAGATCGCGAGATATTGTTTGTAATGATAATGGTATAATA
ACGAATAACAGCAAGAACGACAAGAGCGACAACAACGACAACAACAATGA
CTACTACTTATATTACTATCACTACTACTACCACCAAAAGCAGAAAAAGG
AGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTAAAAAGAGAA
AGAAAGAAAGGAGGCGAGAGGAACAATGTGTACCTTTATATACTGAATTG
A
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Synonyms
Publications