jgi.p|Nanoce1779_2|589005, mRNA_4405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589005
Unique NamemRNA_4405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_10:509101..509941 -

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Properties
Property NameValue
TranscriptId589091
TrackFilteredModels2
ProteinId589005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:509101..509941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589005gene_4405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589005mRNA_4405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4405CDS_4405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Nanoce1779_2|589005|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
CTTCAACGGCCCATCTTAGCCGTTGGTAGAAACGCATCGCCGAGGACCGA
GGAGTGAGGCATCATGAAATATCGTCAAGCGACAACCATTACTTTTTCAC
ACTCCTTGCCCCTTCGCCGTGGTTGCCCTCGTTTGCACGGTTGTCGAATG
CCTGTCGTTAACACCTGTACTTATTTGTTCATCTTTCTATTCTCTGGACA
ACACGCTAGTACACAGAGACACAATCATGATGCAGCCACCGCCTCAGCTT
TCCAAACCCAGTGCTGCCAAAGCTGCACTACCCCAACAACATCACAATGC
CTTGCCCGACGACGAAACCCGCTTCATCATTGAGCTGGAGTTCGTGCAGT
GCCTGGCCAATGCCGACTACTTGCATTGGCTCGCCCTCAACAAATACCTG
GACGACCCGGCCTTCGTCGTCTTCCTACGCTATCTCAATTACTGGCGCCG
ACCGGAGTACGCACGATTTCTGGTTTATCCCCAGACCTTGGCCGTGCTTG
AGCTGTTGGGACGAGCAGAAGTTCGAAAAGAGATAGGAAGGGTTCAGTAT
AAGGATTTTCTGCAGGACCAGCAATTGCTGCAGTGGCGGTTCTACCTCAA
CAACCGGCGACGACTCGCGGATGCGGGTTCACCAGCGGGTACGGAAGGTG
AGCGACGTGCACTGAGAGCACTGAGTAAGGCTGGTGGGACATGGTCAAGT
GCGTTGAATGAGCCACCGGGACCGCCCTTGTCAGTGGTAGATTCTGGAGG
AGGAAGAGCAGGAGTGGCCGCCAGTAACGCCAAGCGAGCAGAACACCAGG
CAAGAATATGAAATGGAAAAAATAATATGAATATAATGCGA
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protein sequence of jgi.p|Nanoce1779_2|589005

>mRNA_4405-protein ID=mRNA_4405-protein|Name=jgi.p|Nanoce1779_2|589005|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MMQPPPQLSKPSAAKAALPQQHHNALPDDETRFIIELEFVQCLANADYLH
WLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVR
KEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALS
KAGGTWSSALNEPPGPPLSVVDSGGGRAGVAASNAKRAEHQARI*
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mRNA from alignment at scaffold_10:509101..509941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Nanoce1779_2|589005|organism=Nannochloropsis oceanica|type=mRNA|length=841bp|location=Sequence derived from alignment at scaffold_10:509101..509941- (Nannochloropsis oceanica)
CTTCAACGGCCCATCTTAGCCGTTGGTAGAAACGCATCGCCGAGGACCGA
GGAGTGAGGCATCATGAAATATCGTCAAGCGACAACCATTACTTTTTCAC
ACTCCTTGCCCCTTCGCCGTGGTTGCCCTCGTTTGCACGGTTGTCGAATG
CCTGTCGTTAACACCTGTACTTATTTGTTCATCTTTCTATTCTCTGGACA
ACACGCTAGTACACAGAGACACAATCATGATGCAGCCACCGCCTCAGCTT
TCCAAACCCAGTGCTGCCAAAGCTGCACTACCCCAACAACATCACAATGC
CTTGCCCGACGACGAAACCCGCTTCATCATTGAGCTGGAGTTCGTGCAGT
GCCTGGCCAATGCCGACTACTTGCATTGGCTCGCCCTCAACAAATACCTG
GACGACCCGGCCTTCGTCGTCTTCCTACGCTATCTCAATTACTGGCGCCG
ACCGGAGTACGCACGATTTCTGGTTTATCCCCAGACCTTGGCCGTGCTTG
AGCTGTTGGGACGAGCAGAAGTTCGAAAAGAGATAGGAAGGGTTCAGTAT
AAGGATTTTCTGCAGGACCAGCAATTGCTGCAGTGGCGGTTCTACCTCAA
CAACCGGCGACGACTCGCGGATGCGGGTTCACCAGCGGGTACGGAAGGTG
AGCGACGTGCACTGAGAGCACTGAGTAAGGCTGGTGGGACATGGTCAAGT
GCGTTGAATGAGCCACCGGGACCGCCCTTGTCAGTGGTAGATTCTGGAGG
AGGAAGAGCAGGAGTGGCCGCCAGTAACGCCAAGCGAGCAGAACACCAGG
CAAGAATATGAAATGGAAAAAATAATATGAATATAATGCGA
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Coding sequence (CDS) from alignment at scaffold_10:509101..509941-

>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Nanoce1779_2|589005|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_10:509101..509941- (Nannochloropsis oceanica)
ATGATGCAGCCACCGCCTCAGCTTTCCAAACCCAGTGCTGCCAAAGCTGC
ACTACCCCAACAACATCACAATGCCTTGCCCGACGACGAAACCCGCTTCA
TCATTGAGCTGGAGTTCGTGCAGTGCCTGGCCAATGCCGACTACTTGCAT
TGGCTCGCCCTCAACAAATACCTGGACGACCCGGCCTTCGTCGTCTTCCT
ACGCTATCTCAATTACTGGCGCCGACCGGAGTACGCACGATTTCTGGTTT
ATCCCCAGACCTTGGCCGTGCTTGAGCTGTTGGGACGAGCAGAAGTTCGA
AAAGAGATAGGAAGGGTTCAGTATAAGGATTTTCTGCAGGACCAGCAATT
GCTGCAGTGGCGGTTCTACCTCAACAACCGGCGACGACTCGCGGATGCGG
GTTCACCAGCGGGTACGGAAGGTGAGCGACGTGCACTGAGAGCACTGAGT
AAGGCTGGTGGGACATGGTCAAGTGCGTTGAATGAGCCACCGGGACCGCC
CTTGTCAGTGGTAGATTCTGGAGGAGGAAGAGCAGGAGTGGCCGCCAGTA
ACGCCAAGCGAGCAGAACACCAGGCAAGAATATGA
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Synonyms
Publications