jgi.p|Nanoce1779_2|589002, mRNA_4404 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589002
Unique Name	mRNA_4404
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1749
Alignment location	scaffold_10:507225..509073 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589088
Track	FilteredModels2
ProteinId	589002

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:507225..509073 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589002	gene_4404	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589002	mRNA_4404-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4404	CDS_4404	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:507225..509073+
coding sequence from alignment at scaffold_10:507225..509073+

mRNA sequence

>mRNA_4404 ID=mRNA_4404|Name=jgi.p|Nanoce1779_2|589002|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
AGACAGGGACCGTTGTGTATATCTCGAGGACAAAACGCCCCAAGGCCTGC
ATATGGTGGCTTAGTGCTGCATGGAGCACAAACTCTGCCTAGAGACGCCG
CCGCGCCACTCTCATCCCCTACGCCTCGCGTCATCCTCGCACTCCTGCTT
GATTCTTGCAGTCATGCTGTCCATGTCCTGCCTGTGCAGCGGGAGTTTCC
GCTCCCTGGTCGTGTACACGGCAAGACATGGTGGCGATTTTCATGCGTGG
GGCTCAATCTCTTCCAGCAGCTATGCCAGCCACCCAAGATCTTGCTCCTC
TTTTATAGGAGCATTTTTCTCCTCCTCCACGACGAACAAGCACCAGCACA
AGCACCTGCACCAGCACCAACGGCAAAGTAATGTAGCATCTATATATTTT
CCCGTGCGACACATATGTCACATCCATGCACAGTCCTCGTCCTCCTCCAC
GCACGAAACCCCGATGGAGGCCGCGGCCGATGCTGCTGCTAGTGCGGAGA
CTGGCGAAGCCCCCCCCTCTCACATGCTTGCCCCCAAGCGAGCCCGCCCA
CGTCGGACGGTGACGGGGGGACTCAAAAACTTGCCTGTGTGCCCGCCAGC
AAATGAATTGCTGAATCGGGCGTTGCGGATATCCAAATATTTGAAGATCG
ATGAAGAGAAAACTAAGAACCAACGTCTGCGTGCCCGTAAGCTTGGGGCC
CTGCAATTGGACACCCTCACCAAGGGCATTTCCAAACCTTTGAAAGATAC
CCTTAAGGCGTACGAATATGAACTTGCCGTCCTCCACCCTTTTGAAGCCA
CACTTGCCGACTTAACAGTCCGCGCCCGTGCCAAGCAAGGCCACCAAACC
CTCCCAGAAGTTCTCTCTGCTGTTAACGAATTGCGGAAAGCAGTGTTGGA
AACAGGCAAGCACTACGCAGGGGCCGCCAAAAACGCGAGTAGCAAAGCAG
AGGCAATCGCCCTAACCGAAGAGGGTTTCCGCGAGGTGGAAAACCTCGTT
CTCGGCAATTCTGAAGTCGTTTTAAATTTAATAGAAGTGCAGAAAGCGCT
GAGAAAAATCCCCATCGTGCAGCTTGACACCCCAACCGTTGTTTTGGTGG
GAGCCCCGAACGTTGGGAAGAGTAGTATAGTCCGGGCCATCTCGTCCGGA
ACACCTGAAGTGAACAATTACCCTTTCACGACTCGCGGGATGACCTTGGG
GCATGTCACATACGACGATTGGGCGTCGGAGAAGTGCCAGGTGATGGATA
CGCCGGGGGTGTTGAATCGGCCGGACGGGGAAAGGAATGAGATGGAAGCG
CTCACCCTTGCAAGCATGCAACATCTCCCGACAGCCGTGATGTTCGTTTT
GGACCTGACGGGGAATTCAGGGGCCTTGTCCTCGATTGAAAATCAAATTC
AAATTCGAAATGACTTGCGGGCACGATTCCCGAAACGGCCGTGGGTAGAC
GTGATCAGCAAGGCAGACTTACCAATGGATGAGTCAGACCCATCAGTGGC
CCGGGCTCCGGAGGGTGCAGTAAGGGTATCGACGGAGGATGGCACGGGCC
TGGTAGAGCTAGAGGCAAGGGTGAGAGAAACGTTGCGAGATGTCCGGGAG
GTTTTGGCGGTGATTGGATTAAGAAAGAAGGAGGATGAGGCGGGAGGCTG
AAGGGGAGGAGGAGGAGGAAGAGGGGGAGGGGGAGGTGACAGTACGAGTA
CTGAGGCGCGAGAAAACGGACAAGATAAGAAAGTAAAGTACACTTCCAC

protein sequence of jgi.p|Nanoce1779_2|589002

>mRNA_4404-protein ID=mRNA_4404-protein|Name=jgi.p|Nanoce1779_2|589002|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MEHKLCLETPPRHSHPLRLASSSHSCLILAVMLSMSCLCSGSFRSLVVYT
ARHGGDFHAWGSISSSSYASHPRSCSSFIGAFFSSSTTNKHQHKHLHQHQ
RQSNVASIYFPVRHICHIHAQSSSSSTHETPMEAAADAAASAETGEAPPS
HMLAPKRARPRRTVTGGLKNLPVCPPANELLNRALRISKYLKIDEEKTKN
QRLRARKLGALQLDTLTKGISKPLKDTLKAYEYELAVLHPFEATLADLTV
RARAKQGHQTLPEVLSAVNELRKAVLETGKHYAGAAKNASSKAEAIALTE
EGFREVENLVLGNSEVVLNLIEVQKALRKIPIVQLDTPTVVLVGAPNVGK
SSIVRAISSGTPEVNNYPFTTRGMTLGHVTYDDWASEKCQVMDTPGVLNR
PDGERNEMEALTLASMQHLPTAVMFVLDLTGNSGALSSIENQIQIRNDLR
ARFPKRPWVDVISKADLPMDESDPSVARAPEGAVRVSTEDGTGLVELEAR
VRETLRDVREVLAVIGLRKKEDEAGG*

mRNA from alignment at scaffold_10:507225..509073+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4404 ID=mRNA_4404|Name=jgi.p|Nanoce1779_2|589002|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at scaffold_10:507225..509073+ (Nannochloropsis oceanica)
AGACAGGGACCGTTGTGTATATCTCGAGGACAAAACGCCCCAAGGCCTGC
ATATGGTGGCTTAGTGCTGCATGGAGCACAAACTCTGCCTAGAGACGCCG
CCGCGCCACTCTCATCCCCTACGCCTCGCGTCATCCTCGCACTCCTGCTT
GATTCTTGCAGTCATGCTGTCCATGTCCTGCCTGTGCAGCGGGAGTTTCC
GCTCCCTGGTCGTGTACACGGCAAGACATGGTGGCGATTTTCATGCGTGG
GGCTCAATCTCTTCCAGCAGCTATGCCAGCCACCCAAGATCTTGCTCCTC
TTTTATAGGAGCATTTTTCTCCTCCTCCACGACGAACAAGCACCAGCACA
AGCACCTGCACCAGCACCAACGGCAAAGTAATGTAGCATCTATATATTTT
CCCGTGCGACACATATGTCACATCCATGCACAGTCCTCGTCCTCCTCCAC
GCACGAAACCCCGATGGAGGCCGCGGCCGATGCTGCTGCTAGTGCGGAGA
CTGGCGAAGCCCCCCCCTCTCACATGCTTGCCCCCAAGCGAGCCCGCCCA
CGTCGGACGGTGACGGGGGGACTCAAAAACTTGCCTGTGTGCCCGCCAGC
AAATGAATTGCTGAATCGGGCGTTGCGGATATCCAAATATTTGAAGGTAT
GCAAGAGGAGGTGGAAGGGGTGGAAGAGTGGGGAGAATGAAGACGAGGAC
CAAGTCTTACTCACCCCCCTTCCTCCCTCATCCATTCAAATCACAGATCG
ATGAAGAGAAAACTAAGAACCAACGTCTGCGTGCCCGTAAGCTTGGGGCC
CTGCAATTGGACACCCTCACCAAGGGCATTTCCAAACCTTTGAAAGATAC
CCTTAAGGCGTACGAATATGAACTTGCCGTCCTCCACCCTTTTGAAGCCA
CACTTGCCGACTTAACAGTCCGCGCCCGTGCCAAGCAAGGCCACCAAACC
CTCCCAGAAGTTCTCTCTGCTGTTAACGAATTGCGGAAAGCAGTGTTGGA
AACAGGCAAGCACTACGCAGGGGCCGCCAAAAACGCGAGTAGCAAAGCAG
AGGCAATCGCCCTAACCGAAGAGGGTTTCCGCGAGGTGGAAAACCTCGTT
CTCGGCAATTCTGAAGTCGTTTTAAATTTAATAGAAGTGCAGAAAGCGCT
GAGAAAAATCCCCATCGTGCAGCTTGACACCCCAACCGTTGTTTTGGTGG
GAGCCCCGAACGTTGGGAAGAGTAGTATAGTCCGGGCCATCTCGTCCGGA
ACACCTGAAGTGAACAATTACCCTTTCACGACTCGCGGGATGACCTTGGG
GCATGTCACATACGACGATTGGGCGTCGGAGAAGTGCCAGGTGATGGATA
CGCCGGGGGTGTTGAATCGGCCGGACGGGGAAAGGAATGAGATGGAAGCG
CTCACCCTTGCAAGCATGCAACATCTCCCGACAGCCGTGATGTTCGTTTT
GGACCTGACGGGGAATTCAGGGGCCTTGTCCTCGATTGAAAATCAAATTC
AAATTCGAAATGACTTGCGGGCACGATTCCCGAAACGGCCGTGGGTAGAC
GTGATCAGCAAGGCAGACTTACCAATGGATGAGTCAGACCCATCAGTGGC
CCGGGCTCCGGAGGGTGCAGTAAGGGTATCGACGGAGGATGGCACGGGCC
TGGTAGAGCTAGAGGCAAGGGTGAGAGAAACGTTGCGAGATGTCCGGGAG
GTTTTGGCGGTGATTGGATTAAGAAAGAAGGAGGATGAGGCGGGAGGCTG
AAGGGGAGGAGGAGGAGGAAGAGGGGGAGGGGGAGGTGACAGTACGAGTA
CTGAGGCGCGAGAAAACGGACAAGATAAGAAAGTAAAGTACACTTCCAC

Coding sequence (CDS) from alignment at scaffold_10:507225..509073+

>mRNA_4404 ID=mRNA_4404|Name=jgi.p|Nanoce1779_2|589002|organism=Nannochloropsis oceanica|type=CDS|length=3162bp|location=Sequence derived from alignment at scaffold_10:507225..509073+ (Nannochloropsis oceanica)
ATGGAGCACAAACTCTGCCTAGAGACGCCGCCGCGCCACTCTCATCCCCT
ACGCCTCGCGTCATCCTCGCACTCCTGCTTGATTCTTGCAGTCATGCTGT
CCATGTCCTGCCTGTGCAGCGGGAGTTTCCGCTCCCTGGTCGTGTACACG
GCAAGACATGGTGGCGATTTTCATGCGTGGGGCTCAATCTCTTCCAGCAG
CTATGCCAGCCACCCAAGATCTTGCTCCTCTTTTATAGGAGCATTTTTCT
CCTCCTCCACGACGAACAAGCACCAGCACAAGCACCTGCACCAGCACCAA
CGGCAAAGTAATGTAGCATCTATATATTTTCCCGTGCGACACATATGTCA
CATCCATGCACAGTCCTCGTCCTCCTCCACGCACGAAACCCCGATGGAGG
CCGCGGCCGATGCTGCTGCTAGTGCGGAGACTGGCGAAGCCCCCCCCTCT
CACATGCTTGCCCCCAAGCGAGCCCGCCCACGTCGGACGGTGACGGGGGG
ACTCAAAAACTTGCCTGTGTGCCCGCCAGCAAATGAATTGCTGAATCGGG
CGTTGCGGATATCCAAATATTTGAAGATCGATGAAGAGAAAACTAAGAAC
CAACGTCTGCGTGCCCGTAAGCTTGGGGCCCTGCAATTGGACACCCTCAC
CAAGGGCATTTCCAAACCTTTGAAAGATACCCTTAAGGCGTACGAATATG
AACTTGCCGTCCTCCACCCTTTTGAAGCCACACTTGCCGACTTAACAGTC
CGCGCCCGTGCCAAGCAAGGCCACCAAACCCTCCCAGAAGTTCTCTCTGC
TGTTAACGAATTGCGGAAAGCAGTGTTGGAAACAGGCAAGCACTACGCAG
GGGCCGCCAAAAACGCGAGTAGCAAAGCAGAGGCAATCGCCCTAACCGAA
GAGGGTTTCCGCGAGGTGGAAAACCTCGTTCTCGGCAATTCTGAAGTCGT
TTTAAATTTAATAGAAGTGCAGAAAGCGCTGAGAAAAATCCCCATCGTGC
AGCTTGACACCCCAACCGTTGTTTTGGTGGGAGCCCCGAACGTTGGGAAG
AGTAGTATAGTCCGGGCCATCTCGTCCGGAACACCTGAAGTGAACAATTA
CCCTTTCACGACTCGCGGGATGACCTTGGGGCATGTCACATACGACGATT
GGGCGTCGGAGAAGTGCCAGGTGATGGATACGCCGGGGGTGTTGAATCGG
CCGGACGGGGAAAGGAATGAGATGGAAGCGCTCACCCTTGCAAGCATGCA
ACATCTCCCGACAGCCGTGATGTTCGTTTTGGACCTGACGGGGAATTCAG
GGGCCTTGTCCTCGATTGAAAATCAAATTCAAATTCGAAATGACTTGCGG
GCACGATTCCCGAAACGGCCGTGGGTAGACGTGATCAGCAAGGCAGACTT
ACCAATGGATGAGTCAGACCCATCAGTGGCCCGGGCTCCGGAGGGTGCAG
TAAGGGTATCGACGGAGGATGGCACGGGCCTGGTAGAGCTAGAGGCAAGG
GTGAGAGAAACGTTGCGAGATGTCCGGGAGGTTTTGGCGGTGATTGGATT
AAGAAAGAAGGAGGATGAGGCGGGAGGCTGAATGGAGCACAAACTCTGCC
TAGAGACGCCGCCGCGCCACTCTCATCCCCTACGCCTCGCGTCATCCTCG
CACTCCTGCTTGATTCTTGCAGTCATGCTGTCCATGTCCTGCCTGTGCAG
CGGGAGTTTCCGCTCCCTGGTCGTGTACACGGCAAGACATGGTGGCGATT
TTCATGCGTGGGGCTCAATCTCTTCCAGCAGCTATGCCAGCCACCCAAGA
TCTTGCTCCTCTTTTATAGGAGCATTTTTCTCCTCCTCCACGACGAACAA
GCACCAGCACAAGCACCTGCACCAGCACCAACGGCAAAGTAATGTAGCAT
CTATATATTTTCCCGTGCGACACATATGTCACATCCATGCACAGTCCTCG
TCCTCCTCCACGCACGAAACCCCGATGGAGGCCGCGGCCGATGCTGCTGC
TAGTGCGGAGACTGGCGAAGCCCCCCCCTCTCACATGCTTGCCCCCAAGC
GAGCCCGCCCACGTCGGACGGTGACGGGGGGACTCAAAAACTTGCCTGTG
TGCCCGCCAGCAAATGAATTGCTGAATCGGGCGTTGCGGATATCCAAATA
TTTGAAGATCGATGAAGAGAAAACTAAGAACCAACGTCTGCGTGCCCGTA
AGCTTGGGGCCCTGCAATTGGACACCCTCACCAAGGGCATTTCCAAACCT
TTGAAAGATACCCTTAAGGCGTACGAATATGAACTTGCCGTCCTCCACCC
TTTTGAAGCCACACTTGCCGACTTAACAGTCCGCGCCCGTGCCAAGCAAG
GCCACCAAACCCTCCCAGAAGTTCTCTCTGCTGTTAACGAATTGCGGAAA
GCAGTGTTGGAAACAGGCAAGCACTACGCAGGGGCCGCCAAAAACGCGAG
TAGCAAAGCAGAGGCAATCGCCCTAACCGAAGAGGGTTTCCGCGAGGTGG
AAAACCTCGTTCTCGGCAATTCTGAAGTCGTTTTAAATTTAATAGAAGTG
CAGAAAGCGCTGAGAAAAATCCCCATCGTGCAGCTTGACACCCCAACCGT
TGTTTTGGTGGGAGCCCCGAACGTTGGGAAGAGTAGTATAGTCCGGGCCA
TCTCGTCCGGAACACCTGAAGTGAACAATTACCCTTTCACGACTCGCGGG
ATGACCTTGGGGCATGTCACATACGACGATTGGGCGTCGGAGAAGTGCCA
GGTGATGGATACGCCGGGGGTGTTGAATCGGCCGGACGGGGAAAGGAATG
AGATGGAAGCGCTCACCCTTGCAAGCATGCAACATCTCCCGACAGCCGTG
ATGTTCGTTTTGGACCTGACGGGGAATTCAGGGGCCTTGTCCTCGATTGA
AAATCAAATTCAAATTCGAAATGACTTGCGGGCACGATTCCCGAAACGGC
CGTGGGTAGACGTGATCAGCAAGGCAGACTTACCAATGGATGAGTCAGAC
CCATCAGTGGCCCGGGCTCCGGAGGGTGCAGTAAGGGTATCGACGGAGGA
TGGCACGGGCCTGGTAGAGCTAGAGGCAAGGGTGAGAGAAACGTTGCGAG
ATGTCCGGGAGGTTTTGGCGGTGATTGGATTAAGAAAGAAGGAGGATGAG
GCGGGAGGCTGA

Synonyms

Publications