jgi.p|Nanoce1779_2|639139, mRNA_4403 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639139
Unique NamemRNA_4403
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1161
Alignment locationscaffold_10:505619..506861 -

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Properties
Property NameValue
TranscriptId639225
TrackFilteredModels2
ProteinId639139
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:505619..506861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639139gene_4403Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639139mRNA_4403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4403CDS_4403Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4403 ID=mRNA_4403|Name=jgi.p|Nanoce1779_2|639139|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ATGGCGACAGACATGAGACACCAAAGCATGACGGCCATGGCAGAAGATGA
AGCAGCGGTGAACAAGCAGCAAACCTCCCCACACCCAACTCCGTTCCCTT
CCCCTGTCGTTCTGAGCAGCAGCAACAACAATAGCAGCAGCAGCACGGGC
ACAACCACGGCTCCCATCCGCGGCCTGCTTCCATCCTTGTTACTGCCGCC
CCACGTGGAAAGCGCACCTTTGCCCGCCACAGTTGTCTTGGAAAAAGTCA
GGCAGTATGTAGAAACTGTCATCGCCTACGAAACTCACCATTTGCCTGTT
GTTAAGTGCAGCAAGAGTGGGAGCCATCGCATCAGAACTCCGGAAAGCTT
TCGAAGTGATGCCTTGACCACCGCTCGTTGGTTAATAGGGGCGAGGTTAG
TAAGGGTGCTACCGTGTGGAACGCGTCTGAGCGGAAAGATTGTGGAAGTA
GAAAGTTATTTGGGCAGTCATGACAAAGGGGCGCACAGTTATGGTGGGAG
AAGGACGCCGCGACTTGCCCCTATGTATGAGGCAGGGGGTGTGGCATATA
TTTATCACATGCACTCCTGCTCCTGTTTGAATGTGATTGCATCTGAAATT
GATGATCCGGTGGGTGTCTTGATTCGTGCCTTGGAGCCCGAGGAAGGGAT
AGAGCACATGCTCCAAAATCGACTGACGGCACGCGTCCTTCGGGGGAGTA
AAAAGAAGTCCTTGTCATCCTCATCGTCGTCGTCCTCCTCCTCCTCTATA
GTACTGCCACGCGTGGAAGACTTATCAGAAACCGAGAGGCGGAAGCTTCA
AGCGGAGTTGTGTGCGGGACCCGGGCGGTTATGTTCTGCCTTGGCCGTGG
ATCACTCGATGAGTGGGTTGGATTTGATTGAAGGCAAGGTGTTGTTTTTA
GAAAGAGGAGAACATGTGCTTGCGTCTGAATTGATGGCGTCTCCGAGGAT
TGGGATTGGTTATGCAGGGTTATGGCAGGCGGCGCCGTTGAGGTTCTCGG
TGCTGGGCAGTCAATGTGTGAGTAAGCCGTGGCCGTGGCGACAAGCAGGG
AGAGGAGGCGGAACAGAAAGAGGAAAAAAGGAAGGAGGAGGAGAAGGAGG
AGGGAGAGGAGGAGGAGGTGATGGACAAAGGGGGAGAAAGCGAATGAAAA
CAATTCAATAA
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protein sequence of jgi.p|Nanoce1779_2|639139

>mRNA_4403-protein ID=mRNA_4403-protein|Name=jgi.p|Nanoce1779_2|639139|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MATDMRHQSMTAMAEDEAAVNKQQTSPHPTPFPSPVVLSSSNNNSSSSTG
TTTAPIRGLLPSLLLPPHVESAPLPATVVLEKVRQYVETVIAYETHHLPV
VKCSKSGSHRIRTPESFRSDALTTARWLIGARLVRVLPCGTRLSGKIVEV
ESYLGSHDKGAHSYGGRRTPRLAPMYEAGGVAYIYHMHSCSCLNVIASEI
DDPVGVLIRALEPEEGIEHMLQNRLTARVLRGSKKKSLSSSSSSSSSSSI
VLPRVEDLSETERRKLQAELCAGPGRLCSALAVDHSMSGLDLIEGKVLFL
ERGEHVLASELMASPRIGIGYAGLWQAAPLRFSVLGSQCVSKPWPWRQAG
RGGGTERGKKEGGGEGGGRGGGGDGQRGRKRMKTIQ*
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mRNA from alignment at scaffold_10:505619..506861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4403 ID=mRNA_4403|Name=jgi.p|Nanoce1779_2|639139|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_10:505619..506861- (Nannochloropsis oceanica)
ATGGCGACAGACATGAGACACCAAAGCATGACGGCCATGGCAGAAGATGA
AGCAGCGGTGAACAAGCAGCAAACCTCCCCACACCCAACTCCGTTCCCTT
CCCCTGTCGTTCTGAGCAGCAGCAACAACAATAGCAGCAGCAGCACGGGC
ACAACCACGGCTCCCATCCGCGGCCTGCTTCCATCCTTGTTACTGCCGCC
CCACGTGGAAAGCGCACCTTTGCCCGCCACAGTTGTCTTGGAAAAAGTCA
GGCAGTATGTAGAAACTGTCATCGCCTACGAAACTCACCATTTGCCTGTT
GTTAAGTGCAGCAAGAGTGGGAGCCATCGCATCAGAACTCCGGAAAGCTT
TCGAAGTGATGCCTTGACCACCGCTCGTTGGTTAATAGGGGCGAGGTTAG
TAAGGGTGCTACCGTGTGGAACGCGTCTGAGCGGAAAGATTGTGGAAGTA
GAAAGTTATTTGGGCAGTCATGACAAAGGGGCGCACAGTTATGGTGGGAG
AAGGACGCCGCGACTTGCCCCTATGTATGAGGCAGGGGGTGTGGCATATA
TTTATCACATGGTAAGGAAGAGAGGAAGGGAGGGAAGGGAGGGAGGTATA
GGAATTTATCTAACTCTATTTATGTGGCCCCATACAAACACAGCACTCCT
GCTCCTGTTTGAATGTGATTGCATCTGAAATTGATGATCCGGTGGGTGTC
TTGATTCGTGCCTTGGAGCCCGAGGAAGGGATAGAGCACATGCTCCAAAA
TCGACTGACGGCACGCGTCCTTCGGGGGAGTAAAAAGAAGTCCTTGTCAT
CCTCATCGTCGTCGTCCTCCTCCTCCTCTATAGTACTGCCACGCGTGGAA
GACTTATCAGAAACCGAGAGGCGGAAGCTTCAAGCGGAGTTGTGTGCGGG
ACCCGGGCGGTTATGTTCTGCCTTGGCCGTGGATCACTCGATGAGTGGGT
TGGATTTGATTGAAGGCAAGGTGTTGTTTTTAGAAAGAGGAGAACATGTG
CTTGCGTCTGAATTGATGGCGTCTCCGAGGATTGGGATTGGTTATGCAGG
GTTATGGCAGGCGGCGCCGTTGAGGTTCTCGGTGCTGGGCAGTCAATGTG
TGAGTAAGCCGTGGCCGTGGCGACAAGCAGGGAGAGGAGGCGGAACAGAA
AGAGGAAAAAAGGAAGGAGGAGGAGAAGGAGGAGGGAGAGGAGGAGGAGG
TGATGGACAAAGGGGGAGAAAGCGAATGAAAACAATTCAATAA
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Coding sequence (CDS) from alignment at scaffold_10:505619..506861-

>mRNA_4403 ID=mRNA_4403|Name=jgi.p|Nanoce1779_2|639139|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_10:505619..506861- (Nannochloropsis oceanica)
CACTCCTGCTCCTGTTTGAATGTGATTGCATCTGAAATTGATGATCCGGT
GGGTGTCTTGATTCGTGCCTTGGAGCCCGAGGAAGGGATAGAGCACATGC
TCCAAAATCGACTGACGGCACGCGTCCTTCGGGGGAGTAAAAAGAAGTCC
TTGTCATCCTCATCGTCGTCGTCCTCCTCCTCCTCTATAGTACTGCCACG
CGTGGAAGACTTATCAGAAACCGAGAGGCGGAAGCTTCAAGCGGAGTTGT
GTGCGGGACCCGGGCGGTTATGTTCTGCCTTGGCCGTGGATCACTCGATG
AGTGGGTTGGATTTGATTGAAGGCAAGGTGTTGTTTTTAGAAAGAGGAGA
ACATGTGCTTGCGTCTGAATTGATGGCGTCTCCGAGGATTGGGATTGGTT
ATGCAGGGTTATGGCAGGCGGCGCCGTTGAGGTTCTCGGTGCTGGGCAGT
CAATGTGTGAGTAAGCCGTGGCCGTGGCGACAAGCAGGGAGAGGAGGCGG
AACAGAAAGAGGAAAAAAGGAAGGAGGAGGAGAAGGAGGAGGGAGAGGAG
GAGGAGGTGATGGACAAAGGGGGAGAAAGCGAATGAAAACAATTCAATAA
ATGGCGACAGACATGAGACACCAAAGCATGACGGCCATGGCAGAAGATGA
AGCAGCGGTGAACAAGCAGCAAACCTCCCCACACCCAACTCCGTTCCCTT
CCCCTGTCGTTCTGAGCAGCAGCAACAACAATAGCAGCAGCAGCACGGGC
ACAACCACGGCTCCCATCCGCGGCCTGCTTCCATCCTTGTTACTGCCGCC
CCACGTGGAAAGCGCACCTTTGCCCGCCACAGTTGTCTTGGAAAAAGTCA
GGCAGTATGTAGAAACTGTCATCGCCTACGAAACTCACCATTTGCCTGTT
GTTAAGTGCAGCAAGAGTGGGAGCCATCGCATCAGAACTCCGGAAAGCTT
TCGAAGTGATGCCTTGACCACCGCTCGTTGGTTAATAGGGGCGAGGTTAG
TAAGGGTGCTACCGTGTGGAACGCGTCTGAGCGGAAAGATTGTGGAAGTA
GAAAGTTATTTGGGCAGTCATGACAAAGGGGCGCACAGTTATGGTGGGAG
AAGGACGCCGCGACTTGCCCCTATGTATGAGGCAGGGGGTGTGGCATATA
TTTATCACATGCACTCCTGCTCCTGTTTGAATGTGATTGCATCTGAAATT
GATGATCCGGTGGGTGTCTTGATTCGTGCCTTGGAGCCCGAGGAAGGGAT
AGAGCACATGCTCCAAAATCGACTGACGGCACGCGTCCTTCGGGGGAGTA
AAAAGAAGTCCTTGTCATCCTCATCGTCGTCGTCCTCCTCCTCCTCTATA
GTACTGCCACGCGTGGAAGACTTATCAGAAACCGAGAGGCGGAAGCTTCA
AGCGGAGTTGTGTGCGGGACCCGGGCGGTTATGTTCTGCCTTGGCCGTGG
ATCACTCGATGAGTGGGTTGGATTTGATTGAAGGCAAGGTGTTGTTTTTA
GAAAGAGGAGAACATGTGCTTGCGTCTGAATTGATGGCGTCTCCGAGGAT
TGGGATTGGTTATGCAGGGTTATGGCAGGCGGCGCCGTTGAGGTTCTCGG
TGCTGGGCAGTCAATGTGTGAGTAAGCCGTGGCCGTGGCGACAAGCAGGG
AGAGGAGGCGGAACAGAAAGAGGAAAAAAGGAAGGAGGAGGAGAAGGAGG
AGGGAGAGGAGGAGGAGGTGATGGACAAAGGGGGAGAAAGCGAATGAAAA
CAATTCAATAAATGGCGACAGACATGAGACACCAAAGCATGACGGCCATG
GCAGAAGATGAAGCAGCGGTGAACAAGCAGCAAACCTCCCCACACCCAAC
TCCGTTCCCTTCCCCTGTCGTTCTGAGCAGCAGCAACAACAATAGCAGCA
GCAGCACGGGCACAACCACGGCTCCCATCCGCGGCCTGCTTCCATCCTTG
TTACTGCCGCCCCACGTGGAAAGCGCACCTTTGCCCGCCACAGTTGTCTT
GGAAAAAGTCAGGCAGTATGTAGAAACTGTCATCGCCTACGAAACTCACC
ATTTGCCTGTTGTTAAGTGCAGCAAGAGTGGGAGCCATCGCATCAGAACT
CCGGAAAGCTTTCGAAGTGATGCCTTGACCACCGCTCGTTGGTTAATAGG
GGCGAGGTTAGTAAGGGTGCTACCGTGTGGAACGCGTCTGAGCGGAAAGA
TTGTGGAAGTAGAAAGTTATTTGGGCAGTCATGACAAAGGGGCGCACAGT
TATGGTGGGAGAAGGACGCCGCGACTTGCCCCTATGTATGAGGCAGGGGG
TGTGGCATATATTTATCACATG
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Synonyms
Publications