jgi.p|Nanoce1779_2|23389, mRNA_4401 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|23389
Unique Name	mRNA_4401
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1622
Alignment location	scaffold_10:501242..503859 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	23475
Track	FilteredModels2
ProteinId	23389

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:501242..503859 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|23389	gene_4401	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|23389	mRNA_4401-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4401	CDS_4401	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:501242..503859+
coding sequence from alignment at scaffold_10:501242..503859+

mRNA sequence

>mRNA_4401 ID=mRNA_4401|Name=jgi.p|Nanoce1779_2|23389|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
TATGATGGCTGCTTTCCCATCAGAAGGAATGGCCCACCGCTTGCATCAGA
AATGGTAGAGGTCATGTGGGCCGCTGTTTGTGGGTGAGCAGCGGCACTTT
GGGGTCTTCATCAAGCCCTCGTAGTCATGCATACACAGCGACAATCGCAT
GATCAAGACGCTCCTTTGCCTACATATTGTCCGCATGCGTTCCTTGAGGC
TTGGGGCGACTAATAGAATCATGCCCTTTCACCAACCACAGCCGCCGCGG
GTAGTACCACCACCACCAGCAGCAGCCAGCAGTATCGAATGGCCCGACTC
AAGAAGGGCTACACTGATGAAGAGGATGGGAGCAGTACCGGTCGGTGGAC
CACGGAGGAGCACACCTTGTTCGAGGACGGCCTGCGCAAGTACGGCAAGC
AGTGGAAGCGGATTGCGGAGGAAATCCCTACCCGTACTGTGGTTCAGATT
AGAACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAAAATCGAGCCGGC
GACCAGCACATCAATTGCGCTGAAGCCTCCAAACTCGGCGAACCACCACC
ACCACCACCACCACATCAGCCATGGTGCGTCGTCATCATCCTTTGCACAC
GGCAGCAGTGGCATTAGCGGGGTGAGCGTGAGTATGGGAGTGGCGATTGG
GGGGGACTTACCCTTGTCGCTGGCACGTAAGAAGCGATCGGTGGGGAAAA
GCACGTACCGCCGTCGTGTGCTCAGTTTAGATTCTGAGGAGGAAGAGGCG
GAGGTTGCCCGCCGGCCCACGATGGAGCAAGGGGTGGAGGGGGGGCAGGA
GACTGAAGGGGAGGAAGAAGGGTGGGATAGCGCCCGTGGTGGGTACCAGC
GGGGCACCACCCTGACGTCTCGCGGTCGTGTATCTCGTCCGCCGCCCCAC
AAGGCTGCTTCGTTCATGTCCCCCCTCCCTGCCTCCCCCTCCCGTGGCAC
GGCCACTTTCGGCGACGGGAGCAGCAGCCATGGGAGCGGGGGCGTGTTTA
GGACCAGCAGTAATGGGGGGAGGAGGCAGCAAAAGCGCTTAAGCCACAGT
GATCATGTCGGCAACAACACCAGCTTCAATTCAGGCAGTCGTCATTCCTC
CAGCTCCTCCTTCAGTCACACACTATGGAGTGCATTGATGCCCTCAGGCG
GCCACCCTACCCTACATGGCCACGGGCACCTCCACCAGCACCATCAGGCC
ACGGGCAGCAGCAGCAACAGCAGCGGAGGATTGATGGTCAAGATACCTTC
GGCGGATGATCATGACGACGAGATCGTGTTGGGAGAGGACAGTTTAGGGT
TTCCGAGTCTGTTGGATGCGTCGCACGGGGCAGGGGGAGGGGGAGGACGG
GAGGACACGTTTGCGACGCTCCATGAGTTGGCAGGGCGAACAGCACCTGA
CTGGGGGGAGGAATTGGACCACATGCTCTTGAACATGCTTGATGCTGGCA
CCAGCGCCTCCACGTGCCCTCCCTCCTCCTCCTCCTCCTCCTCGGCCTCG
GCTGCGGTTACCACAGCGGGGGTCTTGCGTGCGTAAAGAGGGGAAGGGAG
AGAGGGGGGGGAGATGAGTGGGAGAGAGGGAGGGAGACACAAATACACAA
CCAATTGACTGTCAGGTTCTTT

protein sequence of jgi.p|Nanoce1779_2|23389

>mRNA_4401-protein ID=mRNA_4401-protein|Name=jgi.p|Nanoce1779_2|23389|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MARLKKGYTDEEDGSSTGRWTTEEHTLFEDGLRKYGKQWKRIAEEIPTRT
VVQIRTHAQKYFLKLAKIEPATSTSIALKPPNSANHHHHHHHISHGASSS
SFAHGSSGISGVSVSMGVAIGGDLPLSLARKKRSVGKSTYRRRVLSLDSE
EEEAEVARRPTMEQGVEGGQETEGEEEGWDSARGGYQRGTTLTSRGRVSR
PPPHKAASFMSPLPASPSRGTATFGDGSSSHGSGGVFRTSSNGGRRQQKR
LSHSDHVGNNTSFNSGSRHSSSSSFSHTLWSALMPSGGHPTLHGHGHLHQ
HHQATGSSSNSSGGLMVKIPSADDHDDEIVLGEDSLGFPSLLDASHGAGG
GGGREDTFATLHELAGRTAPDWGEELDHMLLNMLDAGTSASTCPPSSSSS
SSASAAVTTAGVLRA*

mRNA from alignment at scaffold_10:501242..503859+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4401 ID=mRNA_4401|Name=jgi.p|Nanoce1779_2|23389|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp|location=Sequence derived from alignment at scaffold_10:501242..503859+ (Nannochloropsis oceanica)
TATGATGGCTGCTTTCCCATCAGAAGGAATGGCCCACCGCTTGCATCAGA
AATGGTAGAGGTCATGTGGGCCGCTGTTTGTGGGTGAGCAGCGGCACTTT
GGGGTCTTCATCAAGCCCTCGTAGTCATGCATACACAGCGACAATCGCAT
GATCAAGACGCTCCTTTGCCTACATATTGTCCGCATGCGTTCCTTGAGGC
TTGGGGCGACTAATAGAATCATGCCCTTTCACCAACCACAGCCGCCGCGG
GTAGTACCACCACCACCAGCAGCAGCCAGGTAAAAGTCCAAAGCCCCGCC
ACAGGACAGTCCCTGTACACACGACCCACGCCTCGAGCCCCGCCACACAA
CCGCAGCCACCAGCTAAAGTGCGTCACCCTCTACCCCAGCAGTATCGAAT
GGCCCGACTCAAGAAGGGCTACACTGATGAAGAGGATGGGAGCAGTACCG
GTCGGTGGACCACGGAGGAGCACACCTTGTTCGAGGACGGCCTGCGCAAG
TACGGCAAGCAGTGGAAGCGGATTGCGGAGGAAATCCCTACCCGTACTGT
GGTTCAGATTAGAACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAAAA
TCGAGCCGGCGACCAGCACATCAATTGCGCTGAAGCCTCCAAACTCGGCG
AACCACCACCACCACCACCACCACATCAGCCATGGTGCGTCGTCATCATC
CTTTGCACACGGCAGCAGTGGCATTAGCGGGGTGAGCGTGAGTATGGGAG
TGGCGATTGGGGGGGACTTACCCTTGTCGCTGGCACGTAAGAAGCGATCG
GTGGGGAAAAGCACGTACCGCCGTCGTGTGCTCAGTTTAGATTCTGAGGA
GGAAGAGGCGGAGGTTGCCCGCCGGCCCACGATGGAGCAAGGGGTGGAGG
GGGGGCAGGAGACTGAAGGGGAGGAAGAAGGGTGGGATAGCGCCCGTGGT
GGGTACCAGCGGGGCACCACCCTGACGTCTCGCGGTCGTGTATCTCGTCC
GCCGCCCCACAAGGCTGCTTCGTTCATGTCCCCCCTCCCTGCCTCCCCCT
CCCGTGGCACGGCCACTTTCGGCGACGGGAGCAGCAGCCATGGGAGCGGG
GGCGTGTTTAGGACCAGCAGTAATGGGGGGAGGAGGCAGCAAAAGCGCTT
AAGCCACAGTGATCATGTCGGCAACAACACCAGCTTCAATTCAGGCAGTC
GTCATTCCTCCAGCTCCTCCTTCAGTCACACACTATGGAGTGCATTGATG
CCCTCAGGCGGCCACCCTACCCTACATGGCCACGGGCACCTCCACCAGCA
CCATCAGGCCACGGGCAGCAGCAGCAACAGCAGCGGAGGATTGATGGTCA
AGATACCTTCGGCGGATGATCATGACGACGAGATCGTGTTGGGAGAGGAC
AGTTTAGGGTTTCCGAGTCTGTTGGATGCGTCGCACGGGGCAGGGGGAGG
GGGAGGACGGGCGACGCAAACTCCGACGTCGGTCGCGGACTTGTACCCGG
GCGTGGTGACGTTCCCGCTGAATATAGTTCATTCGGTAGGAGAGGAGGAG
GGGGGGGGTCGAGGAGGAGGAGGAAGACAGGATGGAGCAGGGGGGAGAGG
AAGGAGAGGGGGACGAAGAGGAGGAGGAGGAGGAGGAGTTGTACACGAAT
TATCGACCGGAGTACATGCATTGCGTTCCTGTGACGATGCAACCGGCAGG
TAGCTGCGCTTCCTCAACCACATCCTCGTCCTCAGCCTCGGCCTCTTCGT
CGGGCGCAGCCGGTACAACGGAGGAAGAGGAAGAGGAGGGCGAGGAGGAG
GAGGAGGAGGACACGTTTGCGACGCTCCATGAGTTGGCAGGGCGAACAGC
ACCTGACTGGGGGGAGGCGTTGAACGAAGCACTAGGGGCCTTGGAAGGGG
TTGGAGGTACGGGGGTCGGGGGGGTTGGGGGGGGGGACGAGGGTCATTTA
CACGCCCATGCGCTGCAGCATGACGAGCGGATGCATCACCATCTCCCGCT
CCCGCTGCCAACGCCGCCTGCCTTGTCGGCGCCGGCCCGGGGATTATCGG
TGAGTAGCCTGACTGACTCGGGGTCCCACTCCTCCTCATCTACGGGAAGT
TACCTCCCGTCGGATGAAAGCGACGAGGAGAGGAGCGGCGCGGCTGCTGG
TGCTAGGGCTAGGGCTGGCGCCGTGGCAGCTGCTGGGTTCTTGGAGGGTG
GGGAAGCCCCGCCCGCGAAACGGGCGCGCATGAGCCAGGAAAGGAGGGAG
GGAGGGGCAGTGTCGTCGCAATTCGTGAAGGGATCTTCCACGGTGCCATT
TATGGTGCATGCTGCGGGAGAGGGAGGGAGGGAGGGAGGGGAGGAAGGGA
GGGAGGGCCTGGAGATGGAAGAGGACAGTGACTACGGATATTTCACGACG
GAGGAGGAATTGGACCACATGCTCTTGAACATGCTTGATGCTGGCACCAG
CGCCTCCACGTGCCCTCCCTCCTCCTCCTCCTCCTCCTCGGCCTCGGCTG
CGGTTACCACAGCGGGGGTCTTGCGTGCGTAAAGAGGGGAAGGGAGAGAG
GGGGGGGAGATGAGTGGGAGAGAGGGAGGGAGACACAAATACACAACCAA
TTGACTGTCAGGTTCTTT

Coding sequence (CDS) from alignment at scaffold_10:501242..503859+

>mRNA_4401 ID=mRNA_4401|Name=jgi.p|Nanoce1779_2|23389|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_10:501242..503859+ (Nannochloropsis oceanica)
ATGGCCCGACTCAAGAAGGGCTACACTGATGAAGAGGATGGGAGCAGTAC
CGGTCGGTGGACCACGGAGGAGCACACCTTGTTCGAGGACGGCCTGCGCA
AGTACGGCAAGCAGTGGAAGCGGATTGCGGAGGAAATCCCTACCCGTACT
GTGGTTCAGATTAGAACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAA
AATCGAGCCGGCGACCAGCACATCAATTGCGCTGAAGCCTCCAAACTCGG
CGAACCACCACCACCACCACCACCACATCAGCCATGGTGCGTCGTCATCA
TCCTTTGCACACGGCAGCAGTGGCATTAGCGGGGTGAGCGTGAGTATGGG
AGTGGCGATTGGGGGGGACTTACCCTTGTCGCTGGCACGTAAGAAGCGAT
CGGTGGGGAAAAGCACGTACCGCCGTCGTGTGCTCAGTTTAGATTCTGAG
GAGGAAGAGGCGGAGGTTGCCCGCCGGCCCACGATGGAGCAAGGGGTGGA
GGGGGGGCAGGAGACTGAAGGGGAGGAAGAAGGGTGGGATAGCGCCCGTG
GTGGGTACCAGCGGGGCACCACCCTGACGTCTCGCGGTCGTGTATCTCGT
CCGCCGCCCCACAAGGCTGCTTCGTTCATGTCCCCCCTCCCTGCCTCCCC
CTCCCGTGGCACGGCCACTTTCGGCGACGGGAGCAGCAGCCATGGGAGCG
GGGGCGTGTTTAGGACCAGCAGTAATGGGGGGAGGAGGCAGCAAAAGCGC
TTAAGCCACAGTGATCATGTCGGCAACAACACCAGCTTCAATTCAGGCAG
TCGTCATTCCTCCAGCTCCTCCTTCAGTCACACACTATGGAGTGCATTGA
TGCCCTCAGGCGGCCACCCTACCCTACATGGCCACGGGCACCTCCACCAG
CACCATCAGGCCACGGGCAGCAGCAGCAACAGCAGCGGAGGATTGATGGT
CAAGATACCTTCGGCGGATGATCATGACGACGAGATCGTGTTGGGAGAGG
ACAGTTTAGGGTTTCCGAGTCTGTTGGATGCGTCGCACGGGGCAGGGGGA
GGGGGAGGACGGGAGGACACGTTTGCGACGCTCCATGAGTTGGCAGGGCG
AACAGCACCTGACTGGGGGGAGGAATTGGACCACATGCTCTTGAACATGC
TTGATGCTGGCACCAGCGCCTCCACGTGCCCTCCCTCCTCCTCCTCCTCC
TCCTCGGCCTCGGCTGCGGTTACCACAGCGGGGGTCTTGCGTGCGTAAAT
GGCCCGACTCAAGAAGGGCTACACTGATGAAGAGGATGGGAGCAGTACCG
GTCGGTGGACCACGGAGGAGCACACCTTGTTCGAGGACGGCCTGCGCAAG
TACGGCAAGCAGTGGAAGCGGATTGCGGAGGAAATCCCTACCCGTACTGT
GGTTCAGATTAGAACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAAAA
TCGAGCCGGCGACCAGCACATCAATTGCGCTGAAGCCTCCAAACTCGGCG
AACCACCACCACCACCACCACCACATCAGCCATGGTGCGTCGTCATCATC
CTTTGCACACGGCAGCAGTGGCATTAGCGGGGTGAGCGTGAGTATGGGAG
TGGCGATTGGGGGGGACTTACCCTTGTCGCTGGCACGTAAGAAGCGATCG
GTGGGGAAAAGCACGTACCGCCGTCGTGTGCTCAGTTTAGATTCTGAGGA
GGAAGAGGCGGAGGTTGCCCGCCGGCCCACGATGGAGCAAGGGGTGGAGG
GGGGGCAGGAGACTGAAGGGGAGGAAGAAGGGTGGGATAGCGCCCGTGGT
GGGTACCAGCGGGGCACCACCCTGACGTCTCGCGGTCGTGTATCTCGTCC
GCCGCCCCACAAGGCTGCTTCGTTCATGTCCCCCCTCCCTGCCTCCCCCT
CCCGTGGCACGGCCACTTTCGGCGACGGGAGCAGCAGCCATGGGAGCGGG
GGCGTGTTTAGGACCAGCAGTAATGGGGGGAGGAGGCAGCAAAAGCGCTT
AAGCCACAGTGATCATGTCGGCAACAACACCAGCTTCAATTCAGGCAGTC
GTCATTCCTCCAGCTCCTCCTTCAGTCACACACTATGGAGTGCATTGATG
CCCTCAGGCGGCCACCCTACCCTACATGGCCACGGGCACCTCCACCAGCA
CCATCAGGCCACGGGCAGCAGCAGCAACAGCAGCGGAGGATTGATGGTCA
AGATACCTTCGGCGGATGATCATGACGACGAGATCGTGTTGGGAGAGGAC
AGTTTAGGGTTTCCGAGTCTGTTGGATGCGTCGCACGGGGCAGGGGGAGG
GGGAGGACGGGAGGACACGTTTGCGACGCTCCATGAGTTGGCAGGGCGAA
CAGCACCTGACTGGGGGGAGGAATTGGACCACATGCTCTTGAACATGCTT
GATGCTGGCACCAGCGCCTCCACGTGCCCTCCCTCCTCCTCCTCCTCCTC
CTCGGCCTCGGCTGCGGTTACCACAGCGGGGGTCTTGCGTGCGTAAATGG
CCCGACTCAAGAAGGGCTACACTGATGAAGAGGATGGGAGCAGTACCGGT
CGGTGGACCACGGAGGAGCACACCTTGTTCGAGGACGGCCTGCGCAAGTA
CGGCAAGCAGTGGAAGCGGATTGCGGAGGAAATCCCTACCCGTACTGTGG
TTCAGATTAGAACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAAAATC
GAGCCGGCGACCAGCACATCAATTGCGCTGAAGCCTCCAAACTCGGCGAA
CCACCACCACCACCACCACCACATCAGCCATGGTGCGTCGTCATCATCCT
TTGCACACGGCAGCAGTGGCATTAGCGGGGTGAGCGTGAGTATGGGAGTG
GCGATTGGGGGGGACTTACCCTTGTCGCTGGCACGTAAGAAGCGATCGGT
GGGGAAAAGCACGTACCGCCGTCGTGTGCTCAGTTTAGATTCTGAGGAGG
AAGAGGCGGAGGTTGCCCGCCGGCCCACGATGGAGCAAGGGGTGGAGGGG
GGGCAGGAGACTGAAGGGGAGGAAGAAGGGTGGGATAGCGCCCGTGGTGG
GTACCAGCGGGGCACCACCCTGACGTCTCGCGGTCGTGTATCTCGTCCGC
CGCCCCACAAGGCTGCTTCGTTCATGTCCCCCCTCCCTGCCTCCCCCTCC
CGTGGCACGGCCACTTTCGGCGACGGGAGCAGCAGCCATGGGAGCGGGGG
CGTGTTTAGGACCAGCAGTAATGGGGGGAGGAGGCAGCAAAAGCGCTTAA
GCCACAGTGATCATGTCGGCAACAACACCAGCTTCAATTCAGGCAGTCGT
CATTCCTCCAGCTCCTCCTTCAGTCACACACTATGGAGTGCATTGATGCC
CTCAGGCGGCCACCCTACCCTACATGGCCACGGGCACCTCCACCAGCACC
ATCAGGCCACGGGCAGCAGCAGCAACAGCAGCGGAGGATTGATGGTCAAG
ATACCTTCGGCGGATGATCATGACGACGAGATCGTGTTGGGAGAGGACAG
TTTAGGGTTTCCGAGTCTGTTGGATGCGTCGCACGGGGCAGGGGGAGGGG
GAGGACGGGAGGACACGTTTGCGACGCTCCATGAGTTGGCAGGGCGAACA
GCACCTGACTGGGGGGAGGAATTGGACCACATGCTCTTGAACATGCTTGA
TGCTGGCACCAGCGCCTCCACGTGCCCTCCCTCCTCCTCCTCCTCCTCCT
CGGCCTCGGCTGCGGTTACCACAGCGGGGGTCTTGCGTGCGTAA

Synonyms

Publications