jgi.p|Nanoce1779_2|588989, mRNA_4400 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588989
Unique Name	mRNA_4400
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1387
Alignment location	scaffold_10:498616..500002 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589075
Track	FilteredModels2
ProteinId	588989

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:498616..500002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588989	gene_4400	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588989	mRNA_4400-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4400	CDS_4400	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:498616..500002+
coding sequence from alignment at scaffold_10:498616..500002+

mRNA sequence

>mRNA_4400 ID=mRNA_4400|Name=jgi.p|Nanoce1779_2|588989|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
CAGATCTCGTCACTATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAG
GGCCACGCTGGCTGGGTAACATCCATCGCCACTCACGCCGACAACCCCAA
TCTGGTCCTGTCCAGTTCGAGGGACAAGACGGTGATGGTCTGGAACATTG
ACGGCTCCGAGGACTACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGG
CACTTCGTCTCCGATGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTC
GAGCTCGTGGGACGGGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGA
CCACCCGTCGATTCGTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTC
TCTCCGGACAACCGACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAA
GCTCTGGAACACCCTGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCC
ACTCCGAGTGGGTTTCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCC
GTCATCGTCTCGTGCGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGC
CAACTGCAAGCTGAAGCAGAACCTGATCGGCCACTCAGGGTACCTTAATG
TCGTCACCGTCTCACCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGAC
GGCACGGCAATGCTCTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTT
GGATGCCGGGGACATCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACT
GGCTGTGCGCTGCCACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGC
AAGGACATGGTCGACAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCA
CTCCCTCTCCCCCCAGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATG
GGCAGACTTTGTTTTCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGC
GTGAACTAATGCTTGAGGCATTCTTACTTTTGGATTAATTCCACTCTTAT
CACAAGGCCAGCTACACGCTCTTTTATTGCTCATCTTCTGTATTCGCTTC
CTTTCTCCTCAAGGCGAGGAAGGAGGAGGAGAGGGAGGGAAGAACTGGGG
GGCGGGATGTGGCTGGCTGACTGCCCGCCTGGTGCGGATTGCCTAAAGGG
AGGAAGGGGGTACCGCACAAGCATTCATTAGACTTTGAAAAACGACAAAC
AAAATGTAGGCATGAACGACTCGAGGGAGGTAAAGAACAAGGTTCAGCGA
GGGGGAGAAGGGGGAACGTGGTCGGGAAGAGAAGGTCTCTGGGCCTGAAA
TTATTTCTCGGTCGTGCTTTATTTTCTCCTCGTGGACTTCAGAGTAAGGA
GGACAAAGCCAACATGAAGAAAACATCAACCAGAACA

protein sequence of jgi.p|Nanoce1779_2|588989

>mRNA_4400-protein ID=mRNA_4400-protein|Name=jgi.p|Nanoce1779_2|588989|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MGEQLSLRGELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWNIDGSED
YGQPQRALRGHGHFVSDVIISSDGQFALSSSWDGTLRLWEIKTGKTTRRF
VGHSKDVLSVSFSPDNRQIVSGSRDKTVKLWNTLGECKFTITDEGHSEWV
SCVRFSPSPTAPVIVSCGWDKRVKVWNLANCKLKQNLIGHSGYLNVVTVS
PDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAA
TSQGIKIWDLESKDMVDNLQPKWPVQGKHSLSPQPYCTSLAWSADGQTLF
SGYTDGKIRCWGVN*

mRNA from alignment at scaffold_10:498616..500002+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4400 ID=mRNA_4400|Name=jgi.p|Nanoce1779_2|588989|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at scaffold_10:498616..500002+ (Nannochloropsis oceanica)
CAGATCTCGTCACTATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAG
GGCCACGCTGGCTGGGTAACATCCATCGCCACTCACGCCGACAACCCCAA
TCTGGTCCTGTCCAGTTCGAGGGACAAGACGGTGATGGTCTGGAACATTG
ACGGCTCCGAGGACTACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGG
CACTTCGTCTCCGATGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTC
GAGCTCGTGGGACGGGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGA
CCACCCGTCGATTCGTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTC
TCTCCGGACAACCGACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAA
GCTCTGGAACACCCTGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCC
ACTCCGAGTGGGTTTCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCC
GTCATCGTCTCGTGCGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGC
CAACTGCAAGCTGAAGCAGAACCTGATCGGCCACTCAGGGTACCTTAATG
TCGTCACCGTCTCACCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGAC
GGCACGGCAATGCTCTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTT
GGATGCCGGGGACATCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACT
GGCTGTGCGCTGCCACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGC
AAGGACATGGTCGACAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCA
CTCCCTCTCCCCCCAGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATG
GGCAGACTTTGTTTTCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGC
GTGAACTAATGCTTGAGGCATTCTTACTTTTGGATTAATTCCACTCTTAT
CACAAGGCCAGCTACACGCTCTTTTATTGCTCATCTTCTGTATTCGCTTC
CTTTCTCCTCAAGGCGAGGAAGGAGGAGGAGAGGGAGGGAAGAACTGGGG
GGCGGGATGTGGCTGGCTGACTGCCCGCCTGGTGCGGATTGCCTAAAGGG
AGGAAGGGGGTACCGCACAAGCATTCATTAGACTTTGAAAAACGACAAAC
AAAATGTAGGCATGAACGACTCGAGGGAGGTAAAGAACAAGGTTCAGCGA
GGGGGAGAAGGGGGAACGTGGTCGGGAAGAGAAGGTCTCTGGGCCTGAAA
TTATTTCTCGGTCGTGCTTTATTTTCTCCTCGTGGACTTCAGAGTAAGGA
GGACAAAGCCAACATGAAGAAAACATCAACCAGAACA

Coding sequence (CDS) from alignment at scaffold_10:498616..500002+

>mRNA_4400 ID=mRNA_4400|Name=jgi.p|Nanoce1779_2|588989|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_10:498616..500002+ (Nannochloropsis oceanica)
ATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAGGGCCACGCTGGCTG
GGTAACATCCATCGCCACTCACGCCGACAACCCCAATCTGGTCCTGTCCA
GTTCGAGGGACAAGACGGTGATGGTCTGGAACATTGACGGCTCCGAGGAC
TACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGGCACTTCGTCTCCGA
TGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTCGAGCTCGTGGGACG
GGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGACCACCCGTCGATTC
GTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTCTCTCCGGACAACCG
ACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAAGCTCTGGAACACCC
TGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCCACTCCGAGTGGGTT
TCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCCGTCATCGTCTCGTG
CGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGCCAACTGCAAGCTGA
AGCAGAACCTGATCGGCCACTCAGGGTACCTTAATGTCGTCACCGTCTCA
CCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGACGGCACGGCAATGCT
CTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTTGGATGCCGGGGACA
TCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACTGGCTGTGCGCTGCC
ACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGCAAGGACATGGTCGA
CAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCACTCCCTCTCCCCCC
AGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATGGGCAGACTTTGTTT
TCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGCGTGAACTAA

Synonyms

Publications