jgi.p|Nanoce1779_2|527986, mRNA_4397 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527986
Unique NamemRNA_4397
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_10:488528..489862 -

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Properties
Property NameValue
TranscriptId528072
TrackFilteredModels2
ProteinId527986
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:488528..489862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527986gene_4397Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4397CDS_4397Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527986mRNA_4397-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4397 ID=mRNA_4397|Name=jgi.p|Nanoce1779_2|527986|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGGCCCGCGACAAGCGCTATAAAGCTCAGTCCGAGATCCCCAAGCAGGT
ATTGGAGTCCATGCATAAGAGTGAAGTGCATTCTCCCGGGTTTTCCATCA
GGGGAGAGGCGCGGGAGGGCCGAGCGGCTTACCTGGACTTCCAAGCTACC
ACTCCTATGGACCCCCGCGTGGTGGACGCCATGCTGCCCTTTATGACAGG
GAGCTTCGGTAACCCTCATTCGAGGACGCACGCGTATGGATGGGAGGCGG
AGGCAGCAGTGGAGAAAGCTAGGGAGCAGGTGGCGTCGATTCTGGGGGCC
TCTTCCAAGGAGATTGTGTTTACGTCGGGGGCGACCGAGAGTAACAATGC
CGCGATTAAGGGCGTGGCACACTTTTACAAGGAGAAGAAGAATCATATCA
TTACCACACAGATTGAGCACAAATGTGTCTTGGATTCATGCCGGGTGCTA
GAACAAGAAGGCTTCAAGGTGACATATTTGCCGGTGCAGAAAAACGGGCT
GTTGGACCTACAGGTGCTCAAGGACGCAATCACGCCGCAGACGTCTTTGG
TCTCGGTGATGGCTGTCAACAATGAGATTGGGGTGTTGCAGCCCATGAGG
GAGATTGGGATGATTTGTCGGGACAAAAAGGTATTTTTCCATTCGGACCT
GGCCCAAATGGTGGGGAAAATGCCGATAGACGTGGATGAGATGAAGGTTG
ATTTGGCTTCTTTGTCTAGTCATAAGGTGTACGGGCCTAAGGGTGTGGGG
GCTATGTATGTGCGCCGTCGTCCACGTGTAAGGCTGGAGCCAATCATGTC
GGGAGGGGGGCAGGAAAGGGGGTTGAGGAGTGGGACTTTGCCTCATTTTC
TGTGTGTGGGGTTCGGGGCTGCGTGTGAGATTGCGAAGAAGGAGCTGCCG
CATGACGAGGCGTGGATTCACTTCTTAGCCAATAGGTTGTATGACGGGAT
TAAGAAGAACATCCCGCATGTGATTTTGAATGGGGATGAGCATGCAAGGT
ACGAAGGGTGCTTGAACATTTCGTTTGCCTATGTGGAGGGGGAGTCCCTT
TTAATGGCCTTGAAAAATATTGCCGTCTCGAGTGGCTCAGCATGCACCTC
AGCGTCGCTGGAGCCGTCGTACGTGCTGCGGGCCATCGGGGTGGGGGAGG
ACCTGGCCCATACGTCGATCCGATTCGGGATAGGGCGGTTCACGACAGTG
GAGGAGGTGGACTTCACGATCGATATTTTGAGCAAGAACGTAGCGCGCTT
GCGGGAGATGTCTCCATTGTATGAGCTGGTCTTGGAGGGCGTCGACCTGA
GCACGATTCAGTGGACACAGGATGCGCACCACTAG
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protein sequence of jgi.p|Nanoce1779_2|527986

>mRNA_4397-protein ID=mRNA_4397-protein|Name=jgi.p|Nanoce1779_2|527986|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MARDKRYKAQSEIPKQVLESMHKSEVHSPGFSIRGEAREGRAAYLDFQAT
TPMDPRVVDAMLPFMTGSFGNPHSRTHAYGWEAEAAVEKAREQVASILGA
SSKEIVFTSGATESNNAAIKGVAHFYKEKKNHIITTQIEHKCVLDSCRVL
EQEGFKVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMR
EIGMICRDKKVFFHSDLAQMVGKMPIDVDEMKVDLASLSSHKVYGPKGVG
AMYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAACEIAKKELP
HDEAWIHFLANRLYDGIKKNIPHVILNGDEHARYEGCLNISFAYVEGESL
LMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTV
EEVDFTIDILSKNVARLREMSPLYELVLEGVDLSTIQWTQDAHH*
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mRNA from alignment at scaffold_10:488528..489862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4397 ID=mRNA_4397|Name=jgi.p|Nanoce1779_2|527986|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_10:488528..489862- (Nannochloropsis oceanica)
ATGGCCCGCGACAAGCGCTATAAAGCTCAGTCCGAGATCCCCAAGCAGGT
ATTGGAGTCCATGCATAAGAGTGAAGTGCATTCTCCCGGGTTTTCCATCA
GGGGAGAGGCGCGGGAGGGCCGAGCGGCTTACCTGGACTTCCAAGCTACC
ACTCCTATGGACCCCCGCGTGGTGGACGCCATGCTGCCCTTTATGACAGG
GAGCTTCGGTAACCCTCATTCGAGGACGCACGCGTATGGATGGGAGGCGG
AGGCAGCAGTGGAGAAAGCTAGGGAGCAGGTGGCGTCGATTCTGGGGGCC
TCTTCCAAGGAGATTGTGTTTACGTCGGGGGCGACCGAGAGTAACAATGC
CGCGATTAAGGGCGTGGCACACTTTTACAAGGAGAAGAAGAATCATATCA
TTACCACACAGATTGAGCACAAATGTGTCTTGGATTCATGCCGGGTGCTA
GAACAAGAAGGCTTCAAGGTGACATATTTGCCGGTGCAGAAAAACGGGCT
GTTGGACCTACAGGTGCTCAAGGACGCAATCACGCCGCAGACGTCTTTGG
TCTCGGTGATGGCTGTCAACAATGAGATTGGGGTGTTGCAGCCCATGAGG
GAGATTGGGATGATTTGTCGGGACAAAAAGGTATTTTTCCATTCGGACCT
GGCCCAAATGGTGGGGAAAATGCCGATAGACGTGGATGAGATGAAGGTTG
ATTTGGCTTCTTTGTCTAGTCATAAGGTGTACGGGCCTAAGGGTGTGGGG
GCTATGTATGTGCGCCGTCGTCCACGTGTAAGGCTGGAGCCAATCATGTC
GGGAGGGGGGCAGGAAAGGGGGTTGAGGAGTGGGACTTTGCCTCATTTTC
TGTGTGTGGGGTTCGGGGCTGCGTGTGAGATTGCGAAGAAGGAGCTGCCG
CATGACGAGGCGTGGATTCACTTCTTAGCCAATAGGTTGTATGACGGGAT
TAAGAAGAACATCCCGCATGTGATTTTGAATGGGGATGAGCATGCAAGGT
ACGAAGGGTGCTTGAACATTTCGTTTGCCTATGTGGAGGGGGAGTCCCTT
TTAATGGCCTTGAAAAATATTGCCGTCTCGAGTGGCTCAGCATGCACCTC
AGCGTCGCTGGAGCCGTCGTACGTGCTGCGGGCCATCGGGGTGGGGGAGG
ACCTGGCCCATACGTCGATCCGATTCGGGATAGGGCGGTTCACGACAGTG
GAGGAGGTGGACTTCACGATCGATATTTTGAGCAAGAACGTAGCGCGCTT
GCGGGAGATGTCTCCATTGTATGAGCTGGTCTTGGAGGGCGTCGACCTGA
GCACGATTCAGTGGACACAGGATGCGCACCACTAG
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Coding sequence (CDS) from alignment at scaffold_10:488528..489862-

>mRNA_4397 ID=mRNA_4397|Name=jgi.p|Nanoce1779_2|527986|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_10:488528..489862- (Nannochloropsis oceanica)
ATGGCCCGCGACAAGCGCTATAAAGCTCAGTCCGAGATCCCCAAGCAGGT
ATTGGAGTCCATGCATAAGAGTGAAGTGCATTCTCCCGGGTTTTCCATCA
GGGGAGAGGCGCGGGAGGGCCGAGCGGCTTACCTGGACTTCCAAGCTACC
ACTCCTATGGACCCCCGCGTGGTGGACGCCATGCTGCCCTTTATGACAGG
GAGCTTCGGTAACCCTCATTCGAGGACGCACGCGTATGGATGGGAGGCGG
AGGCAGCAGTGGAGAAAGCTAGGGAGCAGGTGGCGTCGATTCTGGGGGCC
TCTTCCAAGGAGATTGTGTTTACGTCGGGGGCGACCGAGAGTAACAATGC
CGCGATTAAGGGCGTGGCACACTTTTACAAGGAGAAGAAGAATCATATCA
TTACCACACAGATTGAGCACAAATGTGTCTTGGATTCATGCCGGGTGCTA
GAACAAGAAGGCTTCAAGGTGACATATTTGCCGGTGCAGAAAAACGGGCT
GTTGGACCTACAGGTGCTCAAGGACGCAATCACGCCGCAGACGTCTTTGG
TCTCGGTGATGGCTGTCAACAATGAGATTGGGGTGTTGCAGCCCATGAGG
GAGATTGGGATGATTTGTCGGGACAAAAAGGTATTTTTCCATTCGGACCT
GGCCCAAATGGTGGGGAAAATGCCGATAGACGTGGATGAGATGAAGGTTG
ATTTGGCTTCTTTGTCTAGTCATAAGGTGTACGGGCCTAAGGGTGTGGGG
GCTATGTATGTGCGCCGTCGTCCACGTGTAAGGCTGGAGCCAATCATGTC
GGGAGGGGGGCAGGAAAGGGGGTTGAGGAGTGGGACTTTGCCTCATTTTC
TGTGTGTGGGGTTCGGGGCTGCGTGTGAGATTGCGAAGAAGGAGCTGCCG
CATGACGAGGCGTGGATTCACTTCTTAGCCAATAGGTTGTATGACGGGAT
TAAGAAGAACATCCCGCATGTGATTTTGAATGGGGATGAGCATGCAAGGT
ACGAAGGGTGCTTGAACATTTCGTTTGCCTATGTGGAGGGGGAGTCCCTT
TTAATGGCCTTGAAAAATATTGCCGTCTCGAGTGGCTCAGCATGCACCTC
AGCGTCGCTGGAGCCGTCGTACGTGCTGCGGGCCATCGGGGTGGGGGAGG
ACCTGGCCCATACGTCGATCCGATTCGGGATAGGGCGGTTCACGACAGTG
GAGGAGGTGGACTTCACGATCGATATTTTGAGCAAGAACGTAGCGCGCTT
GCGGGAGATGTCTCCATTGTATGAGCTGGTCTTGGAGGGCGTCGACCTGA
GCACGATTCAGTGGACACAGGATGCGCACCACTAG
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Synonyms
Publications