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Properties
| Property Name | Value |
|---|
| TranscriptId | 670852 |
| Track | FilteredModels2 |
| ProteinId | 670766 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:481964..484238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4395 ID=mRNA_4395|Name=jgi.p|Nanoce1779_2|670766|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp
CACTAAAACTCCACGGCACGTCCTATGGATCTGTCTGTGTCGCTACGTAG
AACGTAGTTTTTTACGATCTTGTCGCTACTGTGGTGGTGGGGTGCGCCCG
GAGACCGTGGTGGACATAAGAATGTGAAAGATGCTCCGCACGCATGGGCG
GCTCAACGAGGCGAGCGATCGAAGAAGCCTGCTTCGGCGTTGTCTCTCTA
AAATACTACTAACTTCTCATACACACTCTTTCCTCCACCACTCATTACAC
AGGCACTCACTATCCCGCTTAATAATCAGCTCCGACAACCACTAACAGTT
AGAAAGTCTATTTACCTCGTCTCCTCTCCCACATTCATCTATTATCATCG
ACTCCCCTTCGACCTCCCCCCCTTCGTGCCTCTCGCCTCTGCCAACTTCA
GCCCCCATGCATGGAGCACCTCCACCTCTTCAATGCTCCTCCCCGCCACG
TCCCACATCAACTCCCTCTACTTTTTCTTCGTCGTCCTCTCCTTCATCTA
TGTCATCGCCATCCTCCTCCTCTACGGCATTTCACACCTCGGTTCAAGAA
ACCTGCATGGAAGCCCTCAATGGCAAGGCCTCCTGCGTGAGTAAGCGATA
CTATAATGACCGCTTTATTCGCCTCTTCCGTCCTACCTATCCTCCACCTC
CCGCTATGTCCCCATTGATTAATCGCGGTTATTTCACTCGAGTCCGAGCT
TTGGAGCTCATCGTGAAAGCGTTCGATGCCCAGTCAACGCATCCATCACC
ATCGTCACCGCCATTGCCACCACGGGTCAATCTGGTCCTGCTCGGCGCGG
GCCTCGATACGCTTTTCCTCCGACTGCAAGGGCATGAAGAGGCGCAAAAG
CACCAACCACTGGAGAAACACGAAGAGAGGACCGCAGCAGCACAGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTACCGGCAGCAGCAGCAGTACCGGCAG
CAGAAGGCATCAGAAGATGTTATTATGAGGTTGACTTTGCGCCGGTGGTG
CTGTACAAAGCACGTTGCATCGAAGCAAATGAAGAGGTTGCATCGTTGTT
GAGAGTTTCCACAGAAGAAAAAGAAGAAGGAGCACTAGCAGGAGCAGGAG
CAGGAGCAGGAGGAGGAGGAAGAGGAGGAGGAGGGAGTTATAACCTCTTG
GCTGGTGATTTGGCGGACACAAAGGCATTGGAGAAGACGCTAGAGGAAGC
AGGGATAGAGTGGGAGTTGCCAACACTGTTGATTGCGGAGTGTGTATTGG
TGTACATGGAGACGGAGGCGAGTCGGGCTTTAGTCGAGTGGACCGCCACC
AAGTTTCCTGTTGCTGCTTTTGTCTCCTACGACATGATCTTACCGCACGA
TGTCTTTGGAAGAATGATGCGAAGCAACCTCGAAAGTCGCGGATTGATCT
TACCCGGATTTGAGACATGGGGTCGTAGCTTGCAAACGCAATTGGAGAGA
TTTGTGGTCAAGGGCGAGGGGGAGGGAGGGAAAGACCGAGGGGAGGAAGG
GACTTGGGAGAGGGCGATTGGGGGGGACATGAATGCGGTGTATGGTTATT
TGTTGGAGGCACGAGACAGGGAGCATGCGATTCGGTTGGAGCATTTGGAT
GAAGTCGAGGAGTGGCACATGTTAATGGTAATTACATCAGTTGAAGTTAA
AGGGTTGGAGAAGGGGGGTCACTACTGCTATGTGATAGCGACGCAAGGCG
CGGCGTTGCGCACGCTTTTGCAGGACCAGCCGGGCTTTCAGGAGCGGGCA
AGGGGAGGCGGCGGGGAGGGAGGAGGGGAGGTACCAGACCGGTTATAGCA
GAAGGGGAAAGCAGGTAGATAGACGATCACAAATGTATATGAAGACTAAA
AGAAAGAATTATTGGCAAATAAAACGTGCGTACCTTTCTGTCTCGGGCTA
TAATTTATCCTGAAAATATTGTGATAGAGTCTCTATCATAGAGAGT back to topprotein sequence of jgi.p|Nanoce1779_2|670766 >mRNA_4395-protein ID=mRNA_4395-protein|Name=jgi.p|Nanoce1779_2|670766|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MHGAPPPLQCSSPPRPTSTPSTFSSSSSPSSMSSPSSSSTAFHTSVQETC
MEALNGKASCVSKRYYNDRFIRLFRPTYPPPPAMSPLINRGYFTRVRALE
LIVKAFDAQSTHPSPSSPPLPPRVNLVLLGAGLDTLFLRLQGHEEAQKHQ
PLEKHEERTAAAQAAAAAAAAAVPAAAAVPAAEGIRRCYYEVDFAPVVLY
KARCIEANEEVASLLRVSTEEKEEGALAGAGAGAGGGGRGGGGSYNLLAG
DLADTKALEKTLEEAGIEWELPTLLIAECVLVYMETEASRALVEWTATKF
PVAAFVSYDMILPHDVFGRMMRSNLESRGLILPGFETWGRSLQTQLERFV
VKGEGEGGKDRGEEGTWERAIGGDMNAVYGYLLEARDREHAIRLEHLDEV
EEWHMLMVITSVEVKGLEKGGHYCYVIATQGAALRTLLQDQPGFQERARG
GGGEGGGEVPDRL* back to topmRNA from alignment at scaffold_10:481964..484238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4395 ID=mRNA_4395|Name=jgi.p|Nanoce1779_2|670766|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at scaffold_10:481964..484238+ (Nannochloropsis oceanica)
CACTAAAACTCCACGGCACGTCCTATGGATCTGTCTGTGTCGCTACGTAG
AACGTAGTTTTTTACGATCTTGTCGCTACTGTGGTGGTGGGGTGCGCCCG
GAGACCGTGGTGGACATAAGAATGTGAAAGATGCTCCGCACGCATGGGCG
GCTCAACGAGGCGAGCGATCGAAGAAGCCTGCTTCGGCGTTGTCTCTCTA
AAATACTACTAACTTCTCATACACACTCTTTCCTCCACCACTCATTACAC
AGGCACTCACTATCCCGCTTAATAATCAGCTCCGACAACCACTAACAGTT
AGAAAGTCTATTTACCTCGTCTCCTCTCCCACATTCATCTATTATCATCG
ACTCCCCTTCGACCTCCCCCCCTTCGTGCCTCTCGCCTCTGCCAACTTCA
GCCCCCATGCATGGAGCACCTCCACCTCTTCAATGCTCCTCCCCGCCACG
TCCCACATCAACTCCCTCTACTTTTTCTTCGTCGTCCTCTCCTTCATCTA
TGTCATCGCCATCCTCCTCCTCTACGGCATTTCACACCTCGGTTCAAGAA
ACCTGCATGGAAGCCCTCAATGGCAAGGCCTCCTGCGTGAGTAAGCGATA
CTATAATGACCGCTTTATTCGCCTCTTCCGTCCTACCTATCCTCCACCTC
CCGCTATGTCCCCATTGATTAATCGCGGTTATTTCACTCGAGTCCGAGCT
TTGGAGCTCATCGTGAAAGCGTTCGATGCCCAGGTTTTAGCAACGGCGGC
AATGTCCTCCTCCTCCTCCTCGTCCCCCCACCCCCCCCCTCCCACGTCCT
CCTCTTTTCCTTCGTCTTCGTTGTCTTCTTCATCACCTTCATCTTCTCCT
TGTACCACTGAGTCAACGCATCCATCACCATCGTCACCGCCATTGCCACC
ACGGGTCAATCTGGTCCTGCTCGGCGCGGGCCTCGATACGCTTTTCCTCC
GACTGCAAGGGCATGAAGAGGCGCAAAAGCACCAACCACTGGAGAAACAC
GAAGAGAGGACCGCAGCAGCACAGGCAGCAGCAGCAGCAGCAGCAGCAGC
AGTACCGGCAGCAGCAGCAGTACCGGCAGCAGAAGGCATCAGAAGATGTT
ATTATGAGGTTGACTTTGCGCCGGTGGTGCTGTACAAAGCACGTTGCATC
GAAGCAAATGAAGAGGTTGCATCGTTGTTGAGAGTTTCCACAGAAGAAAA
AGAAGAAGGAGCACTAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGAGGAA
GAGGAGGAGGAGGGAGTTATAACCTCTTGGCTGGTGATTTGGCGGACACA
AAGGCATTGGAGAAGACGCTAGAGGAAGCAGGGATAGAGTGGGAGTTGCC
AACACTGTTGATTGCGGAGTGTGTATTGGTGTACATGGAGACGGAGGCGA
GTCGGGCTTTAGTCGAGGTAAAGTGAATGAAGGGGAGAAATAGAGAGGAC
TAATAGGGTGATCGAAATCCCATCCATATGGGGCAACACAGGAGCTTAAT
TCACGCACTCATCTTTCTGGTTGTTTCTTTTTTCAATACATCACAGTGGA
CCGCCACCAAGTTTCCTGTTGCTGCTTTTGTCTCCTACGACATGATCTTA
CCGCACGATGTCTTTGGAAGAATGATGCGAAGCAACCTCGAAAGTCGCGG
ATTGATCTTACCCGGATTTGAGACATGGGGTCGTAGCTTGCAAACGCAAT
TGGAGAGATTTGTGGTCAAGGGCGAGGGGGAGGGAGGGAAAGACCGAGGG
GAGGAAGGGACTTGGGAGAGGGCGATTGGGGGGGACATGAATGCGGTGTA
TGGTTATTTGTTGGAGGCACGAGACAGGGAGCATGCGATTCGGTTGGAGC
ATTTGGATGAAGTCGAGGAGTGGCACATGTTAATGGTAATTACATCAGTT
GAAGTTAAAGGGTTGGAGAAGGGGGTAAGAGGAGGTTAAATATTCTTGGA
GGAAGCTCACTTTCACAATGCCTTCAAACAACCCCCAAAATATAGGGTCA
CTACTGCTATGTGATAGCGACGCAAGGCGCGGCGTTGCGCACGCTTTTGC
AGGACCAGCCGGGCTTTCAGGAGCGGGCAAGGGGAGGCGGCGGGGAGGGA
GGAGGGGAGGTACCAGACCGGTTATAGCAGAAGGGGAAAGCAGGTAGATA
GACGATCACAAATGTATATGAAGACTAAAAGAAAGAATTATTGGCAAATA
AAACGTGCGTACCTTTCTGTCTCGGGCTATAATTTATCCTGAAAATATTG
TGATAGAGTCTCTATCATAGAGAGT back to topCoding sequence (CDS) from alignment at scaffold_10:481964..484238+ >mRNA_4395 ID=mRNA_4395|Name=jgi.p|Nanoce1779_2|670766|organism=Nannochloropsis oceanica|type=CDS|length=5568bp|location=Sequence derived from alignment at scaffold_10:481964..484238+ (Nannochloropsis oceanica)
ATGCATGGAGCACCTCCACCTCTTCAATGCTCCTCCCCGCCACGTCCCAC
ATCAACTCCCTCTACTTTTTCTTCGTCGTCCTCTCCTTCATCTATGTCAT
CGCCATCCTCCTCCTCTACGGCATTTCACACCTCGGTTCAAGAAACCTGC
ATGGAAGCCCTCAATGGCAAGGCCTCCTGCGTGAGTAAGCGATACTATAA
TGACCGCTTTATTCGCCTCTTCCGTCCTACCTATCCTCCACCTCCCGCTA
TGTCCCCATTGATTAATCGCGGTTATTTCACTCGAGTCCGAGCTTTGGAG
CTCATCGTGAAAGCGTTCGATGCCCAGTCAACGCATCCATCACCATCGTC
ACCGCCATTGCCACCACGGGTCAATCTGGTCCTGCTCGGCGCGGGCCTCG
ATACGCTTTTCCTCCGACTGCAAGGGCATGAAGAGGCGCAAAAGCACCAA
CCACTGGAGAAACACGAAGAGAGGACCGCAGCAGCACAGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTACCGGCAGCAGCAGCAGTACCGGCAGCAGAAG
GCATCAGAAGATGTTATTATGAGGTTGACTTTGCGCCGGTGGTGCTGTAC
AAAGCACGTTGCATCGAAGCAAATGAAGAGGTTGCATCGTTGTTGAGAGT
TTCCACAGAAGAAAAAGAAGAAGGAGCACTAGCAGGAGCAGGAGCAGGAG
CAGGAGGAGGAGGAAGAGGAGGAGGAGGGAGTTATAACCTCTTGGCTGGT
GATTTGGCGGACACAAAGGCATTGGAGAAGACGCTAGAGGAAGCAGGGAT
AGAGTGGGAGTTGCCAACACTGTTGATTGCGGAGTGTGTATTGGTGTACA
TGGAGACGGAGGCGAGTCGGGCTTTAGTCGAGTGGACCGCCACCAAGTTT
CCTGTTGCTGCTTTTGTCTCCTACGACATGATCTTACCGCACGATGTCTT
TGGAAGAATGATGCGAAGCAACCTCGAAAGTCGCGGATTGATCTTACCCG
GATTTGAGACATGGGGTCGTAGCTTGCAAACGCAATTGGAGAGATTTGTG
GTCAAGGGCGAGGGGGAGGGAGGGAAAGACCGAGGGGAGGAAGGGACTTG
GGAGAGGGCGATTGGGGGGGACATGAATGCGGTGTATGGTTATTTGTTGG
AGGCACGAGACAGGGAGCATGCGATTCGGTTGGAGCATTTGGATGAAGTC
GAGGAGTGGCACATGTTAATGGTAATTACATCAGTTGAAGTTAAAGGGTT
GGAGAAGGGGGGTCACTACTGCTATGTGATAGCGACGCAAGGCGCGGCGT
TGCGCACGCTTTTGCAGGACCAGCCGGGCTTTCAGGAGCGGGCAAGGGGA
GGCGGCGGGGAGGGAGGAGGGGAGGTACCAGACCGGTTATAGATGCATGG
AGCACCTCCACCTCTTCAATGCTCCTCCCCGCCACGTCCCACATCAACTC
CCTCTACTTTTTCTTCGTCGTCCTCTCCTTCATCTATGTCATCGCCATCC
TCCTCCTCTACGGCATTTCACACCTCGGTTCAAGAAACCTGCATGGAAGC
CCTCAATGGCAAGGCCTCCTGCGTGAGTAAGCGATACTATAATGACCGCT
TTATTCGCCTCTTCCGTCCTACCTATCCTCCACCTCCCGCTATGTCCCCA
TTGATTAATCGCGGTTATTTCACTCGAGTCCGAGCTTTGGAGCTCATCGT
GAAAGCGTTCGATGCCCAGTCAACGCATCCATCACCATCGTCACCGCCAT
TGCCACCACGGGTCAATCTGGTCCTGCTCGGCGCGGGCCTCGATACGCTT
TTCCTCCGACTGCAAGGGCATGAAGAGGCGCAAAAGCACCAACCACTGGA
GAAACACGAAGAGAGGACCGCAGCAGCACAGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTACCGGCAGCAGCAGCAGTACCGGCAGCAGAAGGCATCAGA
AGATGTTATTATGAGGTTGACTTTGCGCCGGTGGTGCTGTACAAAGCACG
TTGCATCGAAGCAAATGAAGAGGTTGCATCGTTGTTGAGAGTTTCCACAG
AAGAAAAAGAAGAAGGAGCACTAGCAGGAGCAGGAGCAGGAGCAGGAGGA
GGAGGAAGAGGAGGAGGAGGGAGTTATAACCTCTTGGCTGGTGATTTGGC
GGACACAAAGGCATTGGAGAAGACGCTAGAGGAAGCAGGGATAGAGTGGG
AGTTGCCAACACTGTTGATTGCGGAGTGTGTATTGGTGTACATGGAGACG
GAGGCGAGTCGGGCTTTAGTCGAGTGGACCGCCACCAAGTTTCCTGTTGC
TGCTTTTGTCTCCTACGACATGATCTTACCGCACGATGTCTTTGGAAGAA
TGATGCGAAGCAACCTCGAAAGTCGCGGATTGATCTTACCCGGATTTGAG
ACATGGGGTCGTAGCTTGCAAACGCAATTGGAGAGATTTGTGGTCAAGGG
CGAGGGGGAGGGAGGGAAAGACCGAGGGGAGGAAGGGACTTGGGAGAGGG
CGATTGGGGGGGACATGAATGCGGTGTATGGTTATTTGTTGGAGGCACGA
GACAGGGAGCATGCGATTCGGTTGGAGCATTTGGATGAAGTCGAGGAGTG
GCACATGTTAATGGTAATTACATCAGTTGAAGTTAAAGGGTTGGAGAAGG
GGGGTCACTACTGCTATGTGATAGCGACGCAAGGCGCGGCGTTGCGCACG
CTTTTGCAGGACCAGCCGGGCTTTCAGGAGCGGGCAAGGGGAGGCGGCGG
GGAGGGAGGAGGGGAGGTACCAGACCGGTTATAGATGCATGGAGCACCTC
CACCTCTTCAATGCTCCTCCCCGCCACGTCCCACATCAACTCCCTCTACT
TTTTCTTCGTCGTCCTCTCCTTCATCTATGTCATCGCCATCCTCCTCCTC
TACGGCATTTCACACCTCGGTTCAAGAAACCTGCATGGAAGCCCTCAATG
GCAAGGCCTCCTGCGTGAGTAAGCGATACTATAATGACCGCTTTATTCGC
CTCTTCCGTCCTACCTATCCTCCACCTCCCGCTATGTCCCCATTGATTAA
TCGCGGTTATTTCACTCGAGTCCGAGCTTTGGAGCTCATCGTGAAAGCGT
TCGATGCCCAGTCAACGCATCCATCACCATCGTCACCGCCATTGCCACCA
CGGGTCAATCTGGTCCTGCTCGGCGCGGGCCTCGATACGCTTTTCCTCCG
ACTGCAAGGGCATGAAGAGGCGCAAAAGCACCAACCACTGGAGAAACACG
AAGAGAGGACCGCAGCAGCACAGGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTACCGGCAGCAGCAGCAGTACCGGCAGCAGAAGGCATCAGAAGATGTTA
TTATGAGGTTGACTTTGCGCCGGTGGTGCTGTACAAAGCACGTTGCATCG
AAGCAAATGAAGAGGTTGCATCGTTGTTGAGAGTTTCCACAGAAGAAAAA
GAAGAAGGAGCACTAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGAGGAAG
AGGAGGAGGAGGGAGTTATAACCTCTTGGCTGGTGATTTGGCGGACACAA
AGGCATTGGAGAAGACGCTAGAGGAAGCAGGGATAGAGTGGGAGTTGCCA
ACACTGTTGATTGCGGAGTGTGTATTGGTGTACATGGAGACGGAGGCGAG
TCGGGCTTTAGTCGAGTGGACCGCCACCAAGTTTCCTGTTGCTGCTTTTG
TCTCCTACGACATGATCTTACCGCACGATGTCTTTGGAAGAATGATGCGA
AGCAACCTCGAAAGTCGCGGATTGATCTTACCCGGATTTGAGACATGGGG
TCGTAGCTTGCAAACGCAATTGGAGAGATTTGTGGTCAAGGGCGAGGGGG
AGGGAGGGAAAGACCGAGGGGAGGAAGGGACTTGGGAGAGGGCGATTGGG
GGGGACATGAATGCGGTGTATGGTTATTTGTTGGAGGCACGAGACAGGGA
GCATGCGATTCGGTTGGAGCATTTGGATGAAGTCGAGGAGTGGCACATGT
TAATGGTAATTACATCAGTTGAAGTTAAAGGGTTGGAGAAGGGGGGTCAC
TACTGCTATGTGATAGCGACGCAAGGCGCGGCGTTGCGCACGCTTTTGCA
GGACCAGCCGGGCTTTCAGGAGCGGGCAAGGGGAGGCGGCGGGGAGGGAG
GAGGGGAGGTACCAGACCGGTTATAGATGCATGGAGCACCTCCACCTCTT
CAATGCTCCTCCCCGCCACGTCCCACATCAACTCCCTCTACTTTTTCTTC
GTCGTCCTCTCCTTCATCTATGTCATCGCCATCCTCCTCCTCTACGGCAT
TTCACACCTCGGTTCAAGAAACCTGCATGGAAGCCCTCAATGGCAAGGCC
TCCTGCGTGAGTAAGCGATACTATAATGACCGCTTTATTCGCCTCTTCCG
TCCTACCTATCCTCCACCTCCCGCTATGTCCCCATTGATTAATCGCGGTT
ATTTCACTCGAGTCCGAGCTTTGGAGCTCATCGTGAAAGCGTTCGATGCC
CAGTCAACGCATCCATCACCATCGTCACCGCCATTGCCACCACGGGTCAA
TCTGGTCCTGCTCGGCGCGGGCCTCGATACGCTTTTCCTCCGACTGCAAG
GGCATGAAGAGGCGCAAAAGCACCAACCACTGGAGAAACACGAAGAGAGG
ACCGCAGCAGCACAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACCGGC
AGCAGCAGCAGTACCGGCAGCAGAAGGCATCAGAAGATGTTATTATGAGG
TTGACTTTGCGCCGGTGGTGCTGTACAAAGCACGTTGCATCGAAGCAAAT
GAAGAGGTTGCATCGTTGTTGAGAGTTTCCACAGAAGAAAAAGAAGAAGG
AGCACTAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGAGGAAGAGGAGGAG
GAGGGAGTTATAACCTCTTGGCTGGTGATTTGGCGGACACAAAGGCATTG
GAGAAGACGCTAGAGGAAGCAGGGATAGAGTGGGAGTTGCCAACACTGTT
GATTGCGGAGTGTGTATTGGTGTACATGGAGACGGAGGCGAGTCGGGCTT
TAGTCGAGTGGACCGCCACCAAGTTTCCTGTTGCTGCTTTTGTCTCCTAC
GACATGATCTTACCGCACGATGTCTTTGGAAGAATGATGCGAAGCAACCT
CGAAAGTCGCGGATTGATCTTACCCGGATTTGAGACATGGGGTCGTAGCT
TGCAAACGCAATTGGAGAGATTTGTGGTCAAGGGCGAGGGGGAGGGAGGG
AAAGACCGAGGGGAGGAAGGGACTTGGGAGAGGGCGATTGGGGGGGACAT
GAATGCGGTGTATGGTTATTTGTTGGAGGCACGAGACAGGGAGCATGCGA
TTCGGTTGGAGCATTTGGATGAAGTCGAGGAGTGGCACATGTTAATGGTA
ATTACATCAGTTGAAGTTAAAGGGTTGGAGAAGGGGGGTCACTACTGCTA
TGTGATAGCGACGCAAGGCGCGGCGTTGCGCACGCTTTTGCAGGACCAGC
CGGGCTTTCAGGAGCGGGCAAGGGGAGGCGGCGGGGAGGGAGGAGGGGAG
GTACCAGACCGGTTATAG back to top
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