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Properties
| Property Name | Value |
|---|
| TranscriptId | 23046 |
| Track | FilteredModels2 |
| ProteinId | 22960 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:479549..482141 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4394 ID=mRNA_4394|Name=jgi.p|Nanoce1779_2|22960|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp
GCTTCTTCGATCGCTCGCCTCGTTGAGCCGCCCATGCGTGCGGAGCATCT
TTCACATTCTTATGTCCACCACGGTCTCCGGGCGCACCCCACCACCACAG
TAGCGACAAGATCGTAAAAAACTACGTTCTACGTAGCGACACAGACAGAT
CCATAGGACGTGCCGTGGAGTTTTAGTGGCATCGAGGAACTACTCCCAGC
AGAATATGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTG
CTCCTGGCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCA
TGGCCCACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGG
GATTGGAAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGT
ATCGGAGGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATG
GGGCAGCCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCC
CAATATCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGT
CTTTTTGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGA
CGGTCGAACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTG
CCAATCACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAA
ATCGCCGCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGT
CCCCGACGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAG
TCCTCGCCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAA
GCCCCCACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCA
ATTCGCCGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGT
GTGCGGATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAA
CGGTTGGGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTA
CACAGTGGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGG
TGTTTGGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAG
GCGGTGAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAG
GGATCATTATCCGCGGGCGCATTTTGAAAGATATTATGCAGACGATCTCT
TCGGGGAATCGGTGGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGC
TACGACAGCTATATGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATT
CTTCCGCTTGAAACGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTC
AAGCACGTGCCGAGGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGT
TCGATGGCCTTGCCGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGG
GGCCGAAGAAGATGATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGA
CGGAGGAAGGGGGGGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATG
CAGCACGCCTTGTGGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTT
GGTAGGACAAGAGGCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAG
AGACCGCGGGGTCGGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGG
GGCCATCTAAGCGAGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCT
ATGGGAGGGGGTTAATGTGGATGATAAGGAGGATCAGATGGTGGAGATGT
TGAAGGCGAGGGGACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCG
TTCCGCCCGCCGACAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAG
TAGGGTGGAGGCGCGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGG
AGGCGTTGAGTGATGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCT
TATGTCATGAAGAGGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCA
GAATAGTCGGGCAGCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGG
AGGAGGAATTTGGGTTGGGTGGCTTTTAGAACAAAAATATACAACAAGGA
ATGAGTTAGAAAACGGGGAGACTATCAAGTAACAGGATGACGGCAGCAGA
CAGAAAGAAGAAGAGAACCAAAAGCACCCTTACTTGTGT back to topprotein sequence of jgi.p|Nanoce1779_2|22960 >mRNA_4394-protein ID=mRNA_4394-protein|Name=jgi.p|Nanoce1779_2|22960|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MKSRCHLIGCGGCLVLLAAATVISSPAVAFVHGPPASSALRILQWAGQGL
ERTAGDDLDAMAIRSIGGRKRTTTTTAVLSLWGSPRVSSSSSNYNDRAPI
SQRPRSRGSSSSSSRLFAGLVGGASGGSLTSDGRTNQNFRTLTADDFAAN
HRVVDNSGNPEKRAEIAAALPGVNLDKLCKEVPDVMLWSPAELAARMAVL
AEAMPGEDLIKCVSQAPTILTGTPYLKKTLAQFAEWFPGKTLAELLPRCA
DATLGTAPRSFEYPKRLGWEVPYLDPGLMGNYTVETELVQAMKESQHLVF
GLWKEDGEALEKFVKAVRRAVLAFETRVFFLRDHYPRAHFERYYADDLFG
ESVGFVDEWAKKHPGYDSYMDEKLAGYENMEFFRLKRLPIAEKEEMLIQA
RAEGMLGPDGAYRGRSMALPAGARGEEGAEEGAEEDDGWDDLEDVVDETE
EGGAEDDDDEFVEAMQHALWVFEVRAGFLERLVGQEAYRNELIRRVRQET
AGSAEEFLERYPAYGGHLSEVLDGWGEIEAELWEGVNVDDKEDQMVEMLK
ARGRAMVYVQNKMASFRPPTIPPVMTERAVESRVEARAKLAAEELEKLEA
LSDEEVKRHWEAYEAYVMKRFPSVRKDVENLQNSRAAGVLFDDEEDDEEE
EFGLGGF* back to topmRNA from alignment at scaffold_10:479549..482141- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4394 ID=mRNA_4394|Name=jgi.p|Nanoce1779_2|22960|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp|location=Sequence derived from alignment at scaffold_10:479549..482141- (Nannochloropsis oceanica)
GCTTCTTCGATCGCTCGCCTCGTTGAGCCGCCCATGCGTGCGGAGCATCT
TTCACATTCTTATGTCCACCACGGTCTCCGGGCGCACCCCACCACCACAG
TAGCGACAAGATCGTAAAAAACTACGTTCTACGTAGCGACACAGACAGAT
CCATAGGACGTGCCGTGGAGTTTTAGTGGCATCGAGGTGAGTGCAAGGCA
AGAAGTGAGGCAGTTGAAGCATGATGGTCAGTGGTTGTGCGGATAGAAGC
GGCAGGTAGACGGCATGCTCACGTGACCCCCCGCATTCTTCCACCAAGGA
ACTACTCCCAGCAGAATATGAAATCAAGGTGCCATTTGATAGGGTGCGGC
GGATGCTTAGTGCTCCTGGCGGCGGCGACCGTAATAAGTAGCCCTGCAGT
TGCCTTCGTGCATGGCCCACCAGCGTCGTCAGCGTTGAGAATACTCCAGT
GGGCAGGTCAGGGATTGGAAAGGACAGCAGGAGACGATCTAGACGCCATG
GCAATCAGGAGTATCGGAGGGCGAAAGCGTACTACCACCACCACGGCGGT
TTTGTCCTTATGGGGCAGCCCCCGCGTCAGTAGCAGCAGCAGCAACTACA
ACGACAGAGCCCCAATATCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGC
AGCAGCAGTCGTCTTTTTGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAG
TCTGACCTCCGACGGTCGAACCAACCAGAACTTCCGCACCCTTACCGCCG
ACGACTTTGCTGCCAATCACCGCGTGGTCGATAACTCAGGGAATCCGGAA
AAACGAGCGGAAATCGCCGCGGCTCTACCAGGTGTAAACCTAGACAAGCT
CTGCAAAGAAGTCCCCGACGTCATGTTGTGGTCTCCGGCGGAACTAGCAG
CAAGAATGGCAGTCCTCGCCGAGGCCATGCCTGGGGAGGATTTGATTAAG
TGTGTGTCACAAGCCCCCACTATCTTGACTGGTACGCCTTACTTGAAGAA
GACCTTGGCCCAATTCGCCGAATGGTTCCCGGGGAAGACTTTGGCGGAGC
TGCTGCCTCGGTGTGCGGATGCCACGTTAGGGACGGCGCCGAGGAGCTTC
GAGTACCCTAAACGGTTGGGATGGGAGGTGCCATATCTAGACCCCGGGCT
CATGGGGAACTACACAGTGGAAACAGAGCTGGTGCAGGCGATGAAAGAGA
GCCAGCATTTGGTGTTTGGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAG
AAGTTTGTGAAGGCGGTGAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGT
TTTTTTCTTGAGGGATCATTATCCGCGGGCGCATTTTGAAAGGTACGTGT
CAATGGGGCCGAGAAGTCGTGCGATGGAAATATATGGGTGCTAAGAGGAA
CGTTGAACTGCAGCGTTTGGGAGGAGACAAGGACGTGCTATTCGTAGGAA
GCGACGACAGACTGTTGGCGCGTGATAGTTACCTCTCCCTCCCTCCCTCC
CTCCCTCTCTCCCTCCCCTTTCCTTCTCGTCCAGATATTATGCAGACGAT
CTCTTCGGGGAATCGGTGGGGTTCGTCGATGAGTGGGCCAAGAAACACCC
GGGCTACGACAGCTATATGGACGAAAAGCTTGCGGGTTACGAAAATATGG
AATTCTTCCGCTTGAAACGTCTGCCCATCGCTGAGAAGGAGGAAATGCTG
ATTCAAGCACGTGCCGAGGGGATGCTGGGACCCGATGGGGCGTATCGTGG
GCGTTCGATGGCCTTGCCGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGG
AGGGGGCCGAAGAAGATGATGGGTGGGACGATTTGGAGGATGTGGTGGAT
GAGACGGAGGAAGGGGGGGCGGAAGACGACGACGACGAGTTTGTGGAGGC
AATGCAGCACGCCTTGTGGGTATTTGAGGTGCGAGCAGGGTTTTTGGAAC
GGTTGGTAGGACAAGAGGCTTACAGGAATGAGTTAATTCGACGGGTAAGG
CAAGAGACCGCGGGGTCGGCAGAAGAGTTTTTAGAGCGATACCCTGCATA
CGGGGGCCATCTAAGCGAGGTCTTGGATGGATGGGGAGAGATTGAAGCTG
AGCTATGGGAGGGGGTTAATGTGGATGATAAGGAGGATCAGATGGTGGAG
ATGTTGAAGGCGAGGGGACGGGCGATGGTGTACGTGCAGAATAAGATGGC
TTCGTTCCGCCCGCCGACAATTCCGCCCGTGATGACTGAGAGGGCGGTGG
AGAGTAGGGTGGAGGCGCGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAG
TTGGAGGCGTTGAGTGATGAGGAGGTGAAGCGGCATTGGGAGGCGTACGA
GGCTTATGTCATGAAGAGGTTTCCATCGGTGAGGAAGGATGTTGAGAATT
TGCAGAATAGTCGGGCAGCCGGGGTTTTGTTTGATGATGAGGAGGATGAT
GAGGAGGAGGAATTTGGGTTGGGTGGCTTTTAGAACAAAAATATACAACA
AGGAATGAGTTAGAAAACGGGGAGACTATCAAGTAACAGGATGACGGCAG
CAGACAGAAAGAAGAAGAGAACCAAAAGCACCCTTACTTGTGT back to topCoding sequence (CDS) from alignment at scaffold_10:479549..482141- >mRNA_4394 ID=mRNA_4394|Name=jgi.p|Nanoce1779_2|22960|organism=Nannochloropsis oceanica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_10:479549..482141- (Nannochloropsis oceanica)
ATATTATGCAGACGATCTCTTCGGGGAATCGGTGGGGTTCGTCGATGAGT
GGGCCAAGAAACACCCGGGCTACGACAGCTATATGGACGAAAAGCTTGCG
GGTTACGAAAATATGGAATTCTTCCGCTTGAAACGTCTGCCCATCGCTGA
GAAGGAGGAAATGCTGATTCAAGCACGTGCCGAGGGGATGCTGGGACCCG
ATGGGGCGTATCGTGGGCGTTCGATGGCCTTGCCGGCGGGGGCACGGGGG
GAGGAAGGGGCTGAGGAGGGGGCCGAAGAAGATGATGGGTGGGACGATTT
GGAGGATGTGGTGGATGAGACGGAGGAAGGGGGGGCGGAAGACGACGACG
ACGAGTTTGTGGAGGCAATGCAGCACGCCTTGTGGGTATTTGAGGTGCGA
GCAGGGTTTTTGGAACGGTTGGTAGGACAAGAGGCTTACAGGAATGAGTT
AATTCGACGGGTAAGGCAAGAGACCGCGGGGTCGGCAGAAGAGTTTTTAG
AGCGATACCCTGCATACGGGGGCCATCTAAGCGAGGTCTTGGATGGATGG
GGAGAGATTGAAGCTGAGCTATGGGAGGGGGTTAATGTGGATGATAAGGA
GGATCAGATGGTGGAGATGTTGAAGGCGAGGGGACGGGCGATGGTGTACG
TGCAGAATAAGATGGCTTCGTTCCGCCCGCCGACAATTCCGCCCGTGATG
ACTGAGAGGGCGGTGGAGAGTAGGGTGGAGGCGCGGGCTAAATTGGCGGC
GGAGGAGTTGGAGAAGTTGGAGGCGTTGAGTGATGAGGAGGTGAAGCGGC
ATTGGGAGGCGTACGAGGCTTATGTCATGAAGAGGTTTCCATCGGTGAGG
AAGGATGTTGAGAATTTGCAGAATAGTCGGGCAGCCGGGGTTTTGTTTGA
TGATGAGGAGGATGATGAGGAGGAGGAATTTGGGTTGGGTGGCTTTTAGA
TGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTGCTCCTG
GCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCATGGCCC
ACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGGGATTGG
AAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGTATCGGA
GGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATGGGGCAG
CCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCCCAATAT
CCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGTCTTTTT
GCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGACGGTCG
AACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTGCCAATC
ACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAAATCGCC
GCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGTCCCCGA
CGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAGTCCTCG
CCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAAGCCCCC
ACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCAATTCGC
CGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGTGTGCGG
ATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAACGGTTG
GGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTACACAGT
GGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGGTGTTTG
GGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAGGCGGTG
AGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAGGGATCA
TTATCCGCGGGCGCATTTTGAAAGATATTATGCAGACGATCTCTTCGGGG
AATCGGTGGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGCTACGAC
AGCTATATGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATTCTTCCG
CTTGAAACGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTCAAGCAC
GTGCCGAGGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGTTCGATG
GCCTTGCCGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGGGGCCGA
AGAAGATGATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGACGGAGG
AAGGGGGGGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATGCAGCAC
GCCTTGTGGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTTGGTAGG
ACAAGAGGCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAGAGACCG
CGGGGTCGGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGGGGCCAT
CTAAGCGAGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCTATGGGA
GGGGGTTAATGTGGATGATAAGGAGGATCAGATGGTGGAGATGTTGAAGG
CGAGGGGACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCGTTCCGC
CCGCCGACAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAGTAGGGT
GGAGGCGCGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGGAGGCGT
TGAGTGATGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCTTATGTC
ATGAAGAGGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCAGAATAG
TCGGGCAGCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGGAGGAGG
AATTTGGGTTGGGTGGCTTTTAGATGAAATCAAGGTGCCATTTGATAGGG
TGCGGCGGATGCTTAGTGCTCCTGGCGGCGGCGACCGTAATAAGTAGCCC
TGCAGTTGCCTTCGTGCATGGCCCACCAGCGTCGTCAGCGTTGAGAATAC
TCCAGTGGGCAGGTCAGGGATTGGAAAGGACAGCAGGAGACGATCTAGAC
GCCATGGCAATCAGGAGTATCGGAGGGCGAAAGCGTACTACCACCACCAC
GGCGGTTTTGTCCTTATGGGGCAGCCCCCGCGTCAGTAGCAGCAGCAGCA
ACTACAACGACAGAGCCCCAATATCCCAAAGACCAAGAAGTCGCGGCAGC
AGCAGCAGCAGCAGTCGTCTTTTTGCTGGCCTAGTGGGCGGCGCCAGCGG
CGGGAGTCTGACCTCCGACGGTCGAACCAACCAGAACTTCCGCACCCTTA
CCGCCGACGACTTTGCTGCCAATCACCGCGTGGTCGATAACTCAGGGAAT
CCGGAAAAACGAGCGGAAATCGCCGCGGCTCTACCAGGTGTAAACCTAGA
CAAGCTCTGCAAAGAAGTCCCCGACGTCATGTTGTGGTCTCCGGCGGAAC
TAGCAGCAAGAATGGCAGTCCTCGCCGAGGCCATGCCTGGGGAGGATTTG
ATTAAGTGTGTGTCACAAGCCCCCACTATCTTGACTGGTACGCCTTACTT
GAAGAAGACCTTGGCCCAATTCGCCGAATGGTTCCCGGGGAAGACTTTGG
CGGAGCTGCTGCCTCGGTGTGCGGATGCCACGTTAGGGACGGCGCCGAGG
AGCTTCGAGTACCCTAAACGGTTGGGATGGGAGGTGCCATATCTAGACCC
CGGGCTCATGGGGAACTACACAGTGGAAACAGAGCTGGTGCAGGCGATGA
AAGAGAGCCAGCATTTGGTGTTTGGGCTGTGGAAGGAGGATGGGGAGGCG
TTGGAGAAGTTTGTGAAGGCGGTGAGGAGGGCGGTGCTTGCGTTTGAGAC
GCGGGTTTTTTTCTTGAGGGATCATTATCCGCGGGCGCATTTTGAAAG back to top
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