Properties
| Property Name | Value |
|---|
| TranscriptId | 589047 |
| Track | FilteredModels2 |
| ProteinId | 588961 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:477283..478610 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4393 ID=mRNA_4393|Name=jgi.p|Nanoce1779_2|588961|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp
GTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGTGTATGCGTTTAT
TGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTGTTCACGTGACCA
TGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTAATTGCTGCGAGC
GATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGTGGGGGCGCCAAT
CTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTGTGGTCCTCCCCT
TGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACCTCGCTGTTTGGA
GTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGCGCTTGGGATCAA
CAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTGCTGCTGCGGCAA
CTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCTACAGATGCTCAA
GGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTTCGGGATTCCTCC
GCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGGAGTTTTTGGGGT
CAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCATACATTCTCATC
GCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCCCCCCAACATATT
GTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCCGGCTTTTGATGG
TGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTCCCCCTGTGTGAA
AATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAGGATATACCGTTG
GGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAACGAGAAACATCCG
GCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGATCAAGAAAATGGC
GGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTCTCTGCTGCAAGG
GGGATGCAATGGGCTAACCCACATGCCACGGTACCAGCAAAGACGCTCTG
ACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTACGTACTGGTATT
GTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTGTTTTGGGGTGGT
GGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGAGTTTTGTGTTGC
CTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTGTTAAGGACGGAG
GCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTTGGCGTGCGCGTG
TGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGATCGCGCATTCGC
ATCGGTGCCCTGGGTAAGAGGGAGGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|588961 >mRNA_4393-protein ID=mRNA_4393-protein|Name=jgi.p|Nanoce1779_2|588961|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MGITFIGCGVSYLIAASDLLESTPLSLLFVGAPIWTRFCNTLLCLLVVLP
LSCTKSLSFLSYTSLFGVIALLLSFATIIALGINNTPPAATAAAAAAAAA
TGELPTKWARAFSTDAQGLSRFFGITCFSFGIPPLLFPIQGSMDRPEFLG
SAVRLALVSVSAAYILIAEATVMLYDFAIPPNILSVLPDSDLATFVRLLM
VMVCLLTYPLAIVPLCENVQNALEGPRVSRIYRWDSLQRGSSQYEERETS
GFNHRASSASLQDQENGGTDTTAQGVSPLSLLQGGCNGLTHMPRYQQRRS
DAESVWSAKRLLLRTGIVFATAVLSTVVPCFGVVVSLMGAFSVAILSFVL
PPLFHLTLFKARLLRTEALWDAGMFLLGLLACACATSLTAKSSLGPIAHS
HRCPG* back to topmRNA from alignment at scaffold_10:477283..478610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4393 ID=mRNA_4393|Name=jgi.p|Nanoce1779_2|588961|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp|location=Sequence derived from alignment at scaffold_10:477283..478610- (Nannochloropsis oceanica)
GTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGTGTATGCGTTTAT
TGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTGTTCACGTGACCA
TGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTAATTGCTGCGAGC
GATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGTGGGGGCGCCAAT
CTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTGTGGTCCTCCCCT
TGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACCTCGCTGTTTGGA
GTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGCGCTTGGGATCAA
CAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTGCTGCTGCGGCAA
CTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCTACAGATGCTCAA
GGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTTCGGGATTCCTCC
GCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGGAGTTTTTGGGGT
CAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCATACATTCTCATC
GCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCCCCCCAACATATT
GTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCCGGCTTTTGATGG
TGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTCCCCCTGTGTGAA
AATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAGGATATACCGTTG
GGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAACGAGAAACATCCG
GCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGATCAAGAAAATGGC
GGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTCTCTGCTGCAAGG
GGGATGCAATGGGCTAACCCACATGCCACGGTACCAGCAAAGACGCTCTG
ACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTACGTACTGGTATT
GTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTGTTTTGGGGTGGT
GGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGAGTTTTGTGTTGC
CTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTGTTAAGGACGGAG
GCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTTGGCGTGCGCGTG
TGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGATCGCGCATTCGC
ATCGGTGCCCTGGGTAAGAGGGAGGGAG back to topCoding sequence (CDS) from alignment at scaffold_10:477283..478610- >mRNA_4393 ID=mRNA_4393|Name=jgi.p|Nanoce1779_2|588961|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_10:477283..478610- (Nannochloropsis oceanica)
ATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTAATTGCTGCGAG
CGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGTGGGGGCGCCAA
TCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTGTGGTCCTCCCC
TTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACCTCGCTGTTTGG
AGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGCGCTTGGGATCA
ACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTGCTGCTGCGGCA
ACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCTACAGATGCTCA
AGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTTCGGGATTCCTC
CGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGGAGTTTTTGGGG
TCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCATACATTCTCAT
CGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCCCCCCAACATAT
TGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCCGGCTTTTGATG
GTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTCCCCCTGTGTGA
AAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAGGATATACCGTT
GGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAACGAGAAACATCC
GGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGATCAAGAAAATGG
CGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTCTCTGCTGCAAG
GGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGCAAAGACGCTCT
GACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTACGTACTGGTAT
TGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTGTTTTGGGGTGG
TGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGAGTTTTGTGTTG
CCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTGTTAAGGACGGA
GGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTTGGCGTGCGCGT
GTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGATCGCGCATTCG
CATCGGTGCCCTGGGTAA back to top
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