jgi.p|Nanoce1779_2|588959, mRNA_4392 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588959
Unique Name	mRNA_4392
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1339
Alignment location	scaffold_10:475582..476920 +

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Properties


Property Name	Value
TranscriptId	589045
Track	FilteredModels2
ProteinId	588959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:475582..476920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588959	gene_4392	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588959	mRNA_4392-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4392	CDS_4392	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:475582..476920+
coding sequence from alignment at scaffold_10:475582..476920+

mRNA sequence

>mRNA_4392 ID=mRNA_4392|Name=jgi.p|Nanoce1779_2|588959|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
AGGCGCTATGCCGCAGACGCGTAAGGAAGAGGTCGAGATGGACGTGAGCG
AGCTGGAGGCCATGACACAGCGTCTTCTCCAGCGGTCTTTGGGGTACGAT
GCGCAAGCAGCAGCCCTCATTATGCGTGTGCTTCTCTATGCACAGATGCG
AGGTAACAGTCAGGGTGTCATCAAGCTTCTTACAGGGGGTGTCCCGGCTT
ACGAAGCTTCTAAAGGCACGCCAATCGAAGTCGAGCACGAGACAAAGCTT
TCCGCCCGGCTTCACGGACATGGCACCTCGGGGATGCTTGTCCTCGACCG
TGCCGTTACCATGGCGATCACCAAGGCGAAAGATCATGGCTTGAGTATGG
TGGCCGCGCACGGAACTTCTTCGGGGACCGGTGCCATTGGATTCTTTGCG
CGCACCATGGCCGATGCCGGCTTGGTGGGTATTGTCTTGTCGCAAAGTCC
CGAGTTGATGGCCCCGCATGGGTCGTACGAACCGATTTTTGGGACCAATC
CTTTCTCTGTCGGCATACCCCGGGAAGATGGTGCCTCCCCCCTGGTGCTG
GACATGGCTACCTCTGCTTATGCATGGTATGCCCTGAAGGAAGCACAGGC
GGCAGGACATGCTATTCCTCCCGATGTGGCGTTTGACGCGAGGGGGAGAC
CGACCACAGATCCAAGCGAGGCCCTCGCGGGGGCGCTGCGAGTGTTTGAC
CGTTCTTATAAAGGGAGTCATATTGCCTTGATGGTCGAGATTTTGGGCGG
TGCTTTGGCGGGGGGCGATGTGGAAGAGAAGTGGGCGAGGGGGAACTGGG
GTAACCTGGTGTTGGCGATCGACCCTGAAGTTCTTGGGCAGTCGTTGGGG
GCGTTTACAGCGAAAGTGGAAGCGGTAGTGAGGAGGGTGAAGGAGGCCAA
GCCTGTGCCCTCTTCAATGACGATGGAGAAAGGTGAAATCGAGGAAGGCA
AGGGGAAAGGAGCAGCGTCAAGAGTCGGCAGCAGCAGCAGCAGCAGCAGT
GGAAGTGCTCCAGGAGGTCCGTCTTTGCCAGGGGAGAGGAGCGAGGCTCT
GGCAGCGATAGTTTTGAAGAGGGGCCGGATTTGCTTGGAACGGAGTGTTT
ACGAGGGGTTGATAAAAGCAGCCGCTGTTACTGAGGCTTGAAGGACCGTA
ATAGATTGAGGGTGTCATTCCTCGGCATAATAGGAAAAATTCGAGAGACA
AATACACAATCAGACAATGTGAAGAAGGAAATAAGATGAAATATCATCCC
CAAAGTGGAAAGTGAAAGAAATCAAGTCCAGACGCGAGTGTTTCCAGGGT
GAGGTGGAGGTTGACGAGCGAAATGAGAACAGATGAGGC

protein sequence of jgi.p|Nanoce1779_2|588959

>mRNA_4392-protein ID=mRNA_4392-protein|Name=jgi.p|Nanoce1779_2|588959|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MPQTRKEEVEMDVSELEAMTQRLLQRSLGYDAQAAALIMRVLLYAQMRGN
SQGVIKLLTGGVPAYEASKGTPIEVEHETKLSARLHGHGTSGMLVLDRAV
TMAITKAKDHGLSMVAAHGTSSGTGAIGFFARTMADAGLVGIVLSQSPEL
MAPHGSYEPIFGTNPFSVGIPREDGASPLVLDMATSAYAWYALKEAQAAG
HAIPPDVAFDARGRPTTDPSEALAGALRVFDRSYKGSHIALMVEILGGAL
AGGDVEEKWARGNWGNLVLAIDPEVLGQSLGAFTAKVEAVVRRVKEAKPV
PSSMTMEKGEIEEGKGKGAASRVGSSSSSSSGSAPGGPSLPGERSEALAA
IVLKRGRICLERSVYEGLIKAAAVTEA*

mRNA from alignment at scaffold_10:475582..476920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4392 ID=mRNA_4392|Name=jgi.p|Nanoce1779_2|588959|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp|location=Sequence derived from alignment at scaffold_10:475582..476920+ (Nannochloropsis oceanica)
AGGCGCTATGCCGCAGACGCGTAAGGAAGAGGTCGAGATGGACGTGAGCG
AGCTGGAGGCCATGACACAGCGTCTTCTCCAGCGGTCTTTGGGGTACGAT
GCGCAAGCAGCAGCCCTCATTATGCGTGTGCTTCTCTATGCACAGATGCG
AGGTAACAGTCAGGGTGTCATCAAGCTTCTTACAGGGGGTGTCCCGGCTT
ACGAAGCTTCTAAAGGCACGCCAATCGAAGTCGAGCACGAGACAAAGCTT
TCCGCCCGGCTTCACGGACATGGCACCTCGGGGATGCTTGTCCTCGACCG
TGCCGTTACCATGGCGATCACCAAGGCGAAAGATCATGGCTTGAGTATGG
TGGCCGCGCACGGAACTTCTTCGGGGACCGGTGCCATTGGATTCTTTGCG
CGCACCATGGCCGATGCCGGCTTGGTGGGTATTGTCTTGTCGCAAAGTCC
CGAGTTGATGGCCCCGCATGGGTCGTACGAACCGATTTTTGGGACCAATC
CTTTCTCTGTCGGCATACCCCGGGAAGATGGTGCCTCCCCCCTGGTGCTG
GACATGGCTACCTCTGCTTATGCATGGTATGCCCTGAAGGAAGCACAGGC
GGCAGGACATGCTATTCCTCCCGATGTGGCGTTTGACGCGAGGGGGAGAC
CGACCACAGATCCAAGCGAGGCCCTCGCGGGGGCGCTGCGAGTGTTTGAC
CGTTCTTATAAAGGGAGTCATATTGCCTTGATGGTCGAGATTTTGGGCGG
TGCTTTGGCGGGGGGCGATGTGGAAGAGAAGTGGGCGAGGGGGAACTGGG
GTAACCTGGTGTTGGCGATCGACCCTGAAGTTCTTGGGCAGTCGTTGGGG
GCGTTTACAGCGAAAGTGGAAGCGGTAGTGAGGAGGGTGAAGGAGGCCAA
GCCTGTGCCCTCTTCAATGACGATGGAGAAAGGTGAAATCGAGGAAGGCA
AGGGGAAAGGAGCAGCGTCAAGAGTCGGCAGCAGCAGCAGCAGCAGCAGT
GGAAGTGCTCCAGGAGGTCCGTCTTTGCCAGGGGAGAGGAGCGAGGCTCT
GGCAGCGATAGTTTTGAAGAGGGGCCGGATTTGCTTGGAACGGAGTGTTT
ACGAGGGGTTGATAAAAGCAGCCGCTGTTACTGAGGCTTGAAGGACCGTA
ATAGATTGAGGGTGTCATTCCTCGGCATAATAGGAAAAATTCGAGAGACA
AATACACAATCAGACAATGTGAAGAAGGAAATAAGATGAAATATCATCCC
CAAAGTGGAAAGTGAAAGAAATCAAGTCCAGACGCGAGTGTTTCCAGGGT
GAGGTGGAGGTTGACGAGCGAAATGAGAACAGATGAGGC

Coding sequence (CDS) from alignment at scaffold_10:475582..476920+

>mRNA_4392 ID=mRNA_4392|Name=jgi.p|Nanoce1779_2|588959|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_10:475582..476920+ (Nannochloropsis oceanica)
ATGCCGCAGACGCGTAAGGAAGAGGTCGAGATGGACGTGAGCGAGCTGGA
GGCCATGACACAGCGTCTTCTCCAGCGGTCTTTGGGGTACGATGCGCAAG
CAGCAGCCCTCATTATGCGTGTGCTTCTCTATGCACAGATGCGAGGTAAC
AGTCAGGGTGTCATCAAGCTTCTTACAGGGGGTGTCCCGGCTTACGAAGC
TTCTAAAGGCACGCCAATCGAAGTCGAGCACGAGACAAAGCTTTCCGCCC
GGCTTCACGGACATGGCACCTCGGGGATGCTTGTCCTCGACCGTGCCGTT
ACCATGGCGATCACCAAGGCGAAAGATCATGGCTTGAGTATGGTGGCCGC
GCACGGAACTTCTTCGGGGACCGGTGCCATTGGATTCTTTGCGCGCACCA
TGGCCGATGCCGGCTTGGTGGGTATTGTCTTGTCGCAAAGTCCCGAGTTG
ATGGCCCCGCATGGGTCGTACGAACCGATTTTTGGGACCAATCCTTTCTC
TGTCGGCATACCCCGGGAAGATGGTGCCTCCCCCCTGGTGCTGGACATGG
CTACCTCTGCTTATGCATGGTATGCCCTGAAGGAAGCACAGGCGGCAGGA
CATGCTATTCCTCCCGATGTGGCGTTTGACGCGAGGGGGAGACCGACCAC
AGATCCAAGCGAGGCCCTCGCGGGGGCGCTGCGAGTGTTTGACCGTTCTT
ATAAAGGGAGTCATATTGCCTTGATGGTCGAGATTTTGGGCGGTGCTTTG
GCGGGGGGCGATGTGGAAGAGAAGTGGGCGAGGGGGAACTGGGGTAACCT
GGTGTTGGCGATCGACCCTGAAGTTCTTGGGCAGTCGTTGGGGGCGTTTA
CAGCGAAAGTGGAAGCGGTAGTGAGGAGGGTGAAGGAGGCCAAGCCTGTG
CCCTCTTCAATGACGATGGAGAAAGGTGAAATCGAGGAAGGCAAGGGGAA
AGGAGCAGCGTCAAGAGTCGGCAGCAGCAGCAGCAGCAGCAGTGGAAGTG
CTCCAGGAGGTCCGTCTTTGCCAGGGGAGAGGAGCGAGGCTCTGGCAGCG
ATAGTTTTGAAGAGGGGCCGGATTTGCTTGGAACGGAGTGTTTACGAGGG
GTTGATAAAAGCAGCCGCTGTTACTGAGGCTTGA

Synonyms

Publications