jgi.p|Nanoce1779_2|588950, mRNA_4390 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588950
Unique Name	mRNA_4390
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2234
Alignment location	scaffold_10:468605..470838 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589036
Track	FilteredModels2
ProteinId	588950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:468605..470838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588950	gene_4390	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588950	mRNA_4390-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4390	CDS_4390	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:468605..470838+
coding sequence from alignment at scaffold_10:468605..470838+

mRNA sequence

>mRNA_4390 ID=mRNA_4390|Name=jgi.p|Nanoce1779_2|588950|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
GCTGCTGCTGCTGCTGCTGCTGCTTTTGCTGGTGCTCCTGTTCCTCCTCC
CGCCCCTGCGCCGTCGCCGCCGACATGTCCGTATCACCCACATCATAGCC
ACTCTCCTCACTGCTTTTGTTATCCTGTACCATGCCTCCTGCCGCCTTCC
TTTCCTCCTCATCTTCCCCCTCCCGCAGGACATCTTGATCCGTCCCTGGC
TCCGGCGATCTGAATCCCATTTCCTCCCTCACACACATGATCAAGCTGCT
CAACAGCTCTGCAAGACCTACGCCGTGGTCACGATGCATGGCTCCCTTCA
AATCCTTTTCCATGCTAATCAATTCTAATGTCACCGCACCCAGTTCCACC
ATCCGATCGTGGCACGCTTGCGTCAAGGCCTGCAGCATCGGCAGCTTAAG
GGAGGGCGACGCACGAAAAGCAGCCACCAAGATGGACATTCTCGGAGAGG
GCAACTTCGGATCTTCGAATCTCAATGCTGACACCATCTCACACATGGTG
CTTTGATCTAGTAGCAATGGAGGAGGCCCGTCAGACGGACGGCGTTTGGA
TGGGGGAAGAGGAGGGAGGGAGGGAGGAAGCGAAGCGGAGGCGAGGCTTG
TCATGGTTACAAAATCAAGACCAAGGCCTCCAGCGGTGCCCGAGGCAATT
TTATCCGGCCCTGGGCCACCCCAGAGAACTTCCATTGAGGCGCGAGGGAC
GGGGGGTAAAGGAGGTTTGCTCTTGTGTTTGCGGCCATAGTGGTGGCTGC
TGGCCGTCAGGGGGTTGGGTTCAAGGGGTGTGTCTTGGGAGGAGAGGGAG
GAGGTGTTGCTGTGTGCGCTATTGATGGTCGTGATAAGCCCGCCATTGCG
GTGGTATTGGTGCGGTTGGGGATGCTGATGAGGAAGGAGGTGGCCGGCGA
CGCTGGCTGCGAAAGAGAGGGGCATTTTGGTCATGGGCGATTCGTCCTCG
TCCTCGTCTTCGTCCTCGTCCTCACCCTCCTCGATGTCCTCGATATCTTC
GTGGCATTCCCCTCTCTCCCCCTGATTTTTCACATTCGGAGGTATAGGGG
TTGTGGAACTTTCCGCCTGCTGTTGCTGCTGCAGTTTCTGTTGTTGCTGT
TGCTGCTGCTCCGCTGGTGGCGAGCCCAGGAGGGAGAGGGGGAGACCCAT
CGTCATGGTCAGGCCTTCTCCGGGCAGAAAGGGGATTGGTGATGCCCTAC
TGATTACGCTACTGCTGCCGCCGCTGTTGCTATTGGGACTCCTAATGCAC
AGGTGGCTGCTTTCGTGCTGTTGCAGACGTGGGAGGGTGATCAACGGCCA
AAATTGTGGGGCCGCGGGCGGCGCAGCTGCTATTGTGGACAACGGTGCCG
GTGGCTCTACCGTTGCTACGGCTGTAGCAGAGGAGGACGACGACGAAAAG
GGAGAGCTCGTGCCACGCCCCATCCGCAATAATCTCGCAACCAACTCAAG
ACCTCTGGACCCAATACCCCCTTCCTGGTCGTCCTCCTCCTCTTCCCCTT
CCTCTCCCTCTTCTTCCTCTTCTTCCACTCTTTCCATATCAGAGTTATTG
GAAATGGCGCCAATGTCTTTGGTGCCCTTGCTTGCTAAGCCTTTGCCGGC
GGGGGTGGTCGAAGGGGTTGACGGGACGGGCCTCGATGATGGTGAAGACG
CAAAATGAGGGAAGGAAGGCGGGCTGAGACAATTCACTGGCGAGACACTC
CTAAGTGGTGACTGGAGATGCTGGTTGAGAAGGACGGAGGCCAGCCGATG
CAGGTTGCCGGTGGTAGGGTCTTCCTGGTCGTTCATGTCCTCGTGTTGGA
GCTGGAGTTGCTGTTGTTGTTTTTGTTGTTTCTGCTGCTCGTCTTGACCA
GCCGAAGCTTCCTCGGCTACATCCGCTGCCGCATCTATTACCGCTGTCGC
TGCCAATTTATTCGGGGCCATCGTTGTGGTGATTGCAGCCGTCGCCGGGG
AGATGGTGGTGGTGGTGGTGCTCGTGGCACGTCGTACGATCTTCCTCTTC
TTACTTGGAAAGCCGCCTCGTCCTCTGTGCGTGCCGAACCTCGGAGGGCT
GACCTCCGGCAGTCCTTGCGCAATGCTGCCGTACTGCTGTCCCTCTGCCA
ATGGTGTAGTACCGCTGTTCCTGCTGGTGGTGTCTTCTAAGACAGGCGTC
GACTTCTGCATTTTTGACTTGGGCGGCCAAGTCTTGCCTAGATCAGGCTC
TTTAGCGTACCACCAACGCCCTCGGCCAGCCTGT

protein sequence of jgi.p|Nanoce1779_2|588950

>mRNA_4390-protein ID=mRNA_4390-protein|Name=jgi.p|Nanoce1779_2|588950|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MVRPSPGRKGIGDALLITLLLPPLLLLGLLMHRWLLSCCCRRGRVINGQN
CGAAGGAAAIVDNGAGGSTVATAVAEEDDDEKGELVPRPIRNNLATNSRP
LDPIPPSWSSSSSSPSSPSSSSSSTLSISELLEMAPMSLVPLLAKPLPAG
VVEGVDGTGLDDGEDAK*

mRNA from alignment at scaffold_10:468605..470838+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4390 ID=mRNA_4390|Name=jgi.p|Nanoce1779_2|588950|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp|location=Sequence derived from alignment at scaffold_10:468605..470838+ (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTTTTGCTGGTGCTCCTGTTCCTCCTCC
CGCCCCTGCGCCGTCGCCGCCGACATGTCCGTATCACCCACATCATAGCC
ACTCTCCTCACTGCTTTTGTTATCCTGTACCATGCCTCCTGCCGCCTTCC
TTTCCTCCTCATCTTCCCCCTCCCGCAGGACATCTTGATCCGTCCCTGGC
TCCGGCGATCTGAATCCCATTTCCTCCCTCACACACATGATCAAGCTGCT
CAACAGCTCTGCAAGACCTACGCCGTGGTCACGATGCATGGCTCCCTTCA
AATCCTTTTCCATGCTAATCAATTCTAATGTCACCGCACCCAGTTCCACC
ATCCGATCGTGGCACGCTTGCGTCAAGGCCTGCAGCATCGGCAGCTTAAG
GGAGGGCGACGCACGAAAAGCAGCCACCAAGATGGACATTCTCGGAGAGG
GCAACTTCGGATCTTCGAATCTCAATGCTGACACCATCTCACACATGGTG
CTTTGATCTAGTAGCAATGGAGGAGGCCCGTCAGACGGACGGCGTTTGGA
TGGGGGAAGAGGAGGGAGGGAGGGAGGAAGCGAAGCGGAGGCGAGGCTTG
TCATGGTTACAAAATCAAGACCAAGGCCTCCAGCGGTGCCCGAGGCAATT
TTATCCGGCCCTGGGCCACCCCAGAGAACTTCCATTGAGGCGCGAGGGAC
GGGGGGTAAAGGAGGTTTGCTCTTGTGTTTGCGGCCATAGTGGTGGCTGC
TGGCCGTCAGGGGGTTGGGTTCAAGGGGTGTGTCTTGGGAGGAGAGGGAG
GAGGTGTTGCTGTGTGCGCTATTGATGGTCGTGATAAGCCCGCCATTGCG
GTGGTATTGGTGCGGTTGGGGATGCTGATGAGGAAGGAGGTGGCCGGCGA
CGCTGGCTGCGAAAGAGAGGGGCATTTTGGTCATGGGCGATTCGTCCTCG
TCCTCGTCTTCGTCCTCGTCCTCACCCTCCTCGATGTCCTCGATATCTTC
GTGGCATTCCCCTCTCTCCCCCTGATTTTTCACATTCGGAGGTATAGGGG
TTGTGGAACTTTCCGCCTGCTGTTGCTGCTGCAGTTTCTGTTGTTGCTGT
TGCTGCTGCTCCGCTGGTGGCGAGCCCAGGAGGGAGAGGGGGAGACCCAT
CGTCATGGTCAGGCCTTCTCCGGGCAGAAAGGGGATTGGTGATGCCCTAC
TGATTACGCTACTGCTGCCGCCGCTGTTGCTATTGGGACTCCTAATGCAC
AGGTGGCTGCTTTCGTGCTGTTGCAGACGTGGGAGGGTGATCAACGGCCA
AAATTGTGGGGCCGCGGGCGGCGCAGCTGCTATTGTGGACAACGGTGCCG
GTGGCTCTACCGTTGCTACGGCTGTAGCAGAGGAGGACGACGACGAAAAG
GGAGAGCTCGTGCCACGCCCCATCCGCAATAATCTCGCAACCAACTCAAG
ACCTCTGGACCCAATACCCCCTTCCTGGTCGTCCTCCTCCTCTTCCCCTT
CCTCTCCCTCTTCTTCCTCTTCTTCCACTCTTTCCATATCAGAGTTATTG
GAAATGGCGCCAATGTCTTTGGTGCCCTTGCTTGCTAAGCCTTTGCCGGC
GGGGGTGGTCGAAGGGGTTGACGGGACGGGCCTCGATGATGGTGAAGACG
CAAAATGAGGGAAGGAAGGCGGGCTGAGACAATTCACTGGCGAGACACTC
CTAAGTGGTGACTGGAGATGCTGGTTGAGAAGGACGGAGGCCAGCCGATG
CAGGTTGCCGGTGGTAGGGTCTTCCTGGTCGTTCATGTCCTCGTGTTGGA
GCTGGAGTTGCTGTTGTTGTTTTTGTTGTTTCTGCTGCTCGTCTTGACCA
GCCGAAGCTTCCTCGGCTACATCCGCTGCCGCATCTATTACCGCTGTCGC
TGCCAATTTATTCGGGGCCATCGTTGTGGTGATTGCAGCCGTCGCCGGGG
AGATGGTGGTGGTGGTGGTGCTCGTGGCACGTCGTACGATCTTCCTCTTC
TTACTTGGAAAGCCGCCTCGTCCTCTGTGCGTGCCGAACCTCGGAGGGCT
GACCTCCGGCAGTCCTTGCGCAATGCTGCCGTACTGCTGTCCCTCTGCCA
ATGGTGTAGTACCGCTGTTCCTGCTGGTGGTGTCTTCTAAGACAGGCGTC
GACTTCTGCATTTTTGACTTGGGCGGCCAAGTCTTGCCTAGATCAGGCTC
TTTAGCGTACCACCAACGCCCTCGGCCAGCCTGT

Coding sequence (CDS) from alignment at scaffold_10:468605..470838+

>mRNA_4390 ID=mRNA_4390|Name=jgi.p|Nanoce1779_2|588950|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_10:468605..470838+ (Nannochloropsis oceanica)
ATGGTCAGGCCTTCTCCGGGCAGAAAGGGGATTGGTGATGCCCTACTGAT
TACGCTACTGCTGCCGCCGCTGTTGCTATTGGGACTCCTAATGCACAGGT
GGCTGCTTTCGTGCTGTTGCAGACGTGGGAGGGTGATCAACGGCCAAAAT
TGTGGGGCCGCGGGCGGCGCAGCTGCTATTGTGGACAACGGTGCCGGTGG
CTCTACCGTTGCTACGGCTGTAGCAGAGGAGGACGACGACGAAAAGGGAG
AGCTCGTGCCACGCCCCATCCGCAATAATCTCGCAACCAACTCAAGACCT
CTGGACCCAATACCCCCTTCCTGGTCGTCCTCCTCCTCTTCCCCTTCCTC
TCCCTCTTCTTCCTCTTCTTCCACTCTTTCCATATCAGAGTTATTGGAAA
TGGCGCCAATGTCTTTGGTGCCCTTGCTTGCTAAGCCTTTGCCGGCGGGG
GTGGTCGAAGGGGTTGACGGGACGGGCCTCGATGATGGTGAAGACGCAAA
ATGA

Synonyms

Publications