jgi.p|Nanoce1779_2|630260, mRNA_4389 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630260
Unique NamemRNA_4389
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1092
Alignment locationscaffold_10:467472..468563 -

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Properties
Property NameValue
TranscriptId630346
TrackFilteredModels2
ProteinId630260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:467472..468563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630260gene_4389Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4389CDS_4389Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630260mRNA_4389-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4389 ID=mRNA_4389|Name=jgi.p|Nanoce1779_2|630260|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
CAGCAGCAGCAGCAGCAGGAGGAGGAGGAAGAGCAGCAATCTGGCCATGT
GCAAACACGTATTCATGGCAGCAGCAGCAGCAACAGCAGCAGCTGTGGCA
GCAACGGCAGCGGATTTAGTGGGAAATGTATAGAGTACCAGGAGACTAAG
GATCAGGATCAGCCGCAGATACTGTCCCAGGCGAAGGAGGGGACAGCGGT
CGGTGCTTCCACGACCTTTTTCTCGTCCTCCTCGTCCTCGAGGCTTTCGC
TGTTCACTCCTATGGAATGCAGTGATCGCGTTCACGAAAAAGAGAAAGAG
GAAGATAGCCGTCGGCATCAGCAGGAGGCTCTCCAACCGGCCCCCCTTCT
CCCCCTCCCCGATGAGCCCCACGAGCCCAAATATCCCCTCCCCCTCGCCC
TTTCACCCTCCTCTTCATTTACCCTCGCTTCTCGCTGGAGCCAATCAATG
ATGCTCCTCCGCGAGGCTCTCGCTGCCCTCGGCATCTTCCTTCGGGCCCA
CTCCCGGAAGCGCGGGAGCAGCAGCTCGGCGCTTGACCGAGCGGAGATGG
AACATATGCGCGATGCGGTTGCGGAAATGATTGGGGCGTACCCGCCGACA
GCCTTGAGAATAACGGAGCTTATACTTCGGGCCTGGCCGACGGGACAGAG
TACAAGGGAGATGGGGTTCTTGCAACTGCTGAATGTGGTGCTGACGGTCT
CCCCGTTGTTGCCGCGGTTGGAAGAAAGGACGCGGGTGCACCATCGGGCG
TTTGCGCGACTGGCGAGGTGTTTGGAAAGTCCCCATGCGGGGGTGGCGGA
GGAGGCGTTGCTTGCCTGCAGTAACCCAAGGGTCATTGCGTTGTACGTCG
GGGTGGGTGCCCCGGGGGGGGGAGGGGCCGGGTTGGATTACATCAATGGC
ATGGTCCAAGTGGCGTTGGGGAGGACAATCGACAGTCACTGGAACCCGGA
GGTGAGACAGGAGTCGAGGAGGATGAGAGAGCTGTTGAATGTGACATGTT
GTAATGGGACAAAGGACGGTGAGAGGGAGGAAGAGATAGAGGGAGGAACG
GGGTGGTTGGGGGTCGATGTGGAGGGCGGCCTGGTGGTTTGA
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protein sequence of jgi.p|Nanoce1779_2|630260

>mRNA_4389-protein ID=mRNA_4389-protein|Name=jgi.p|Nanoce1779_2|630260|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MECSDRVHEKEKEEDSRRHQQEALQPAPLLPLPDEPHEPKYPLPLALSPS
SSFTLASRWSQSMMLLREALAALGIFLRAHSRKRGSSSSALDRAEMEHMR
DAVAEMIGAYPPTALRITELILRAWPTGQSTREMGFLQLLNVVLTVSPLL
PRLEERTRVHHRAFARLARCLESPHAGVAEEALLACSNPRVIALYVGVGA
PGGGGAGLDYINGMVQVALGRTIDSHWNPEVRQESRRMRELLNVTCCNGT
KDGEREEEIEGGTGWLGVDVEGGLVV*
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mRNA from alignment at scaffold_10:467472..468563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4389 ID=mRNA_4389|Name=jgi.p|Nanoce1779_2|630260|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp|location=Sequence derived from alignment at scaffold_10:467472..468563- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGGAGGAGGAGGAAGAGCAGCAATCTGGCCATGT
GCAAACACGTATTCATGGCAGCAGCAGCAGCAACAGCAGCAGCTGTGGCA
GCAACGGCAGCGGATTTAGTGGGAAATGTATAGAGTACCAGGAGACTAAG
GATCAGGATCAGCCGCAGATACTGTCCCAGGCGAAGGAGGGGACAGCGGT
CGGTGCTTCCACGACCTTTTTCTCGTCCTCCTCGTCCTCGAGGCTTTCGC
TGTTCACTCCTATGGAATGCAGTGATCGCGTTCACGAAAAAGAGAAAGAG
GAAGATAGCCGTCGGCATCAGCAGGAGGCTCTCCAACCGGCCCCCCTTCT
CCCCCTCCCCGATGAGCCCCACGAGCCCAAATATCCCCTCCCCCTCGCCC
TTTCACCCTCCTCTTCATTTACCCTCGCTTCTCGCTGGAGCCAATCAATG
ATGCTCCTCCGCGAGGCTCTCGCTGCCCTCGGCATCTTCCTTCGGGCCCA
CTCCCGGAAGCGCGGGAGCAGCAGCTCGGCGCTTGACCGAGCGGAGATGG
AACATATGCGCGATGCGGTTGCGGAAATGATTGGGGCGTACCCGCCGACA
GCCTTGAGAATAACGGAGCTTATACTTCGGGCCTGGCCGACGGGACAGAG
TACAAGGGAGATGGGGTTCTTGCAACTGCTGAATGTGGTGCTGACGGTCT
CCCCGTTGTTGCCGCGGTTGGAAGAAAGGACGCGGGTGCACCATCGGGCG
TTTGCGCGACTGGCGAGGTGTTTGGAAAGTCCCCATGCGGGGGTGGCGGA
GGAGGCGTTGCTTGCCTGCAGTAACCCAAGGGTCATTGCGTTGTACGTCG
GGGTGGGTGCCCCGGGGGGGGGAGGGGCCGGGTTGGATTACATCAATGGC
ATGGTCCAAGTGGCGTTGGGGAGGACAATCGACAGTCACTGGAACCCGGA
GGTGAGACAGGAGTCGAGGAGGATGAGAGAGCTGTTGAATGTGACATGTT
GTAATGGGACAAAGGACGGTGAGAGGGAGGAAGAGATAGAGGGAGGAACG
GGGTGGTTGGGGGTCGATGTGGAGGGCGGCCTGGTGGTTTGA
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Coding sequence (CDS) from alignment at scaffold_10:467472..468563-

>mRNA_4389 ID=mRNA_4389|Name=jgi.p|Nanoce1779_2|630260|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_10:467472..468563- (Nannochloropsis oceanica)
ATGGAATGCAGTGATCGCGTTCACGAAAAAGAGAAAGAGGAAGATAGCCG
TCGGCATCAGCAGGAGGCTCTCCAACCGGCCCCCCTTCTCCCCCTCCCCG
ATGAGCCCCACGAGCCCAAATATCCCCTCCCCCTCGCCCTTTCACCCTCC
TCTTCATTTACCCTCGCTTCTCGCTGGAGCCAATCAATGATGCTCCTCCG
CGAGGCTCTCGCTGCCCTCGGCATCTTCCTTCGGGCCCACTCCCGGAAGC
GCGGGAGCAGCAGCTCGGCGCTTGACCGAGCGGAGATGGAACATATGCGC
GATGCGGTTGCGGAAATGATTGGGGCGTACCCGCCGACAGCCTTGAGAAT
AACGGAGCTTATACTTCGGGCCTGGCCGACGGGACAGAGTACAAGGGAGA
TGGGGTTCTTGCAACTGCTGAATGTGGTGCTGACGGTCTCCCCGTTGTTG
CCGCGGTTGGAAGAAAGGACGCGGGTGCACCATCGGGCGTTTGCGCGACT
GGCGAGGTGTTTGGAAAGTCCCCATGCGGGGGTGGCGGAGGAGGCGTTGC
TTGCCTGCAGTAACCCAAGGGTCATTGCGTTGTACGTCGGGGTGGGTGCC
CCGGGGGGGGGAGGGGCCGGGTTGGATTACATCAATGGCATGGTCCAAGT
GGCGTTGGGGAGGACAATCGACAGTCACTGGAACCCGGAGGTGAGACAGG
AGTCGAGGAGGATGAGAGAGCTGTTGAATGTGACATGTTGTAATGGGACA
AAGGACGGTGAGAGGGAGGAAGAGATAGAGGGAGGAACGGGGTGGTTGGG
GGTCGATGTGGAGGGCGGCCTGGTGGTTTGA
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Synonyms
Publications