jgi.p|Nanoce1779_2|588947, mRNA_4388 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588947
Unique Name	mRNA_4388
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1649
Alignment location	scaffold_10:464932..466580 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589033
Track	FilteredModels2
ProteinId	588947

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:464932..466580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588947	gene_4388	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588947	mRNA_4388-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4388	CDS_4388	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:464932..466580+
coding sequence from alignment at scaffold_10:464932..466580+

mRNA sequence

>mRNA_4388 ID=mRNA_4388|Name=jgi.p|Nanoce1779_2|588947|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
CAGACTGTGCTTCATCACCAAATTACGGTGACAACGCCAATAGTATCCTC
TACATGTTCATGATTTTGAGACCTCTAGCCCCTGCCCTGCCATTTATTTT
GCGCAAAGTAAAGTGCCTCGTCTAGGCGGCCTCCCTCCTCCATCTCCACC
ACCAGCACCACACATACGCCCTCCGCTCCCGCAGCAGCGATAAACAGCTG
GCAGATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCA
ATGAAATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTC
GTTCGCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGT
ACTCCGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAG
CGCTGGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTAC
CTCAAGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGA
GTACGTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGG
AAGAGAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTT
GTCGACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGA
GATGCTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTA
AGCGGAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACAC
CCACAGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGC
TTTGCGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGG
AGGAGGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCA
GAGGCGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGA
GGTCGAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAG
GAGGGGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAG
GCTCAAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAA
TACCAACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAG
CAGAAGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAAC
AGCGAGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGA
ACTGAAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATG
CGGTGAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCA
AGGTGCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAA
AAAGCAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGT
TGCTATGTGATGCAGGGGAGCGGGTAAGGTGACATGAAAAGAATATCATA
TATCCTGGAAGGAGAAAGGCGGGGTAGGTTCTCCTGTAAGGATGTTTCTG
GGCGGGTCGGATGCGAAGGAGGAAAGATGGAACGAGGTTGAGCAAGTAAC
GCATGAATGATACATAATTATCATCAAAGTCAAGAAAATTAAAGCGGCT

protein sequence of jgi.p|Nanoce1779_2|588947

>mRNA_4388-protein ID=mRNA_4388-protein|Name=jgi.p|Nanoce1779_2|588947|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MADASSLSIILRQRINEIAQEVLRLKEEHAALVRAKNKASAYQGRLETVL
REVHTLEAIHADYNLALDKLRTSIDPAHLRLYLKRLKTQNTEAARGVREY
VLRRQHLEHEADRLLEERTRRTETEEEEIKRFVDSKTFELYQELREQMEM
LERAAQRQEEELAKVKRREGEEQQEQEEQQQHPQKDDPEQQKYQQQYQAL
RVELRRLEGMRRYLEEEDMPLVSLWAKDREEAEAQLQTRMERDQQRADEV
EDQCRVLRQGGNVGRGGGWQVVVERARKERQQAQEDANMLDVKLYSSNNT
NNKNNNVSDKSIKHKAEEHAVNDDDLNPDAYNSEVIVELLKERAKRLGEL
KRVRVMKGRITVEINAVNKKKKTLKEEMGVWARCLLDEGGIKGGGEEEKK
QLKEECLELVERLNALLCDAGERVR*

mRNA from alignment at scaffold_10:464932..466580+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4388 ID=mRNA_4388|Name=jgi.p|Nanoce1779_2|588947|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at scaffold_10:464932..466580+ (Nannochloropsis oceanica)
CAGACTGTGCTTCATCACCAAATTACGGTGACAACGCCAATAGTATCCTC
TACATGTTCATGATTTTGAGACCTCTAGCCCCTGCCCTGCCATTTATTTT
GCGCAAAGTAAAGTGCCTCGTCTAGGCGGCCTCCCTCCTCCATCTCCACC
ACCAGCACCACACATACGCCCTCCGCTCCCGCAGCAGCGATAAACAGCTG
GCAGATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCA
ATGAAATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTC
GTTCGCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGT
ACTCCGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAG
CGCTGGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTAC
CTCAAGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGA
GTACGTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGG
AAGAGAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTT
GTCGACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGA
GATGCTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTA
AGCGGAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACAC
CCACAGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGC
TTTGCGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGG
AGGAGGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCA
GAGGCGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGA
GGTCGAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAG
GAGGGGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAG
GCTCAAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAA
TACCAACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAG
CAGAAGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAAC
AGCGAGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGA
ACTGAAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATG
CGGTGAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCA
AGGTGCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAA
AAAGCAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGT
TGCTATGTGATGCAGGGGAGCGGGTAAGGTGACATGAAAAGAATATCATA
TATCCTGGAAGGAGAAAGGCGGGGTAGGTTCTCCTGTAAGGATGTTTCTG
GGCGGGTCGGATGCGAAGGAGGAAAGATGGAACGAGGTTGAGCAAGTAAC
GCATGAATGATACATAATTATCATCAAAGTCAAGAAAATTAAAGCGGCT

Coding sequence (CDS) from alignment at scaffold_10:464932..466580+

>mRNA_4388 ID=mRNA_4388|Name=jgi.p|Nanoce1779_2|588947|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_10:464932..466580+ (Nannochloropsis oceanica)
ATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCAATGA
AATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTCGTTC
GCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGTACTC
CGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAGCGCT
GGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTACCTCA
AGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGAGTAC
GTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGGAAGA
GAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTTGTCG
ACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGAGATG
CTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTAAGCG
GAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACACCCAC
AGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGCTTTG
CGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGGAGGA
GGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCAGAGG
CGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGAGGTC
GAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAGGAGG
GGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAGGCTC
AAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAATACC
AACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAGCAGA
AGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAACAGCG
AGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGAACTG
AAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATGCGGT
GAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCAAGGT
GCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAAAAAG
CAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGTTGCT
ATGTGATGCAGGGGAGCGGGTAAGGTGA

Synonyms

Publications