jgi.p|Nanoce1779_2|588941, mRNA_4386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588941
Unique NamemRNA_4386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1047
Alignment locationscaffold_10:460467..461513 -

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Properties
Property NameValue
TranscriptId589027
TrackFilteredModels2
ProteinId588941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:460467..461513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588941gene_4386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588941mRNA_4386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4386CDS_4386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4386 ID=mRNA_4386|Name=jgi.p|Nanoce1779_2|588941|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
AACAGACGCCTGTCCCACGCCCTCATGCACAAACCAATGCATCACTTGGC
TAGGCAAGGGTAGATAGAATGGGGAACAAAGCGTCGGCGCAGCTCCTACC
GTCGCTGGATGACATGCTCAAAACCTTTTCCCCTGCTGAGGTCCAAGCAC
TCGAGGCACGCTTTCCTACAGCTCCTTTGTCGTCGCCCCGCCATCAGCAG
CAGTCAACAAACAACGGCAGCAGCGGCAGCGACCGGAAACGAAACGGGAG
GAAACAATCTTTTCCTGACTCCACGCTCGCGCTCGTGACCGAAGCACAAT
TTGTGGCTTTGCTTGGGGAGGGGTATGGACCCAGCGTGAAGAGGTTGCTC
CTCCGTCTCTTTGCCGTGCTAGACACCAATGGCACAAGTGCTTTGGAATA
CCAGGAGCACGTGGGAACAGTTTACTTTTTCAATCATGCCACCGCGACAG
AGCGGGCCCGTGTCTTGTTTTACATGTACGAGCCGACATCCTCCTCCTCT
CCCTCTCCTTTTGCCACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACA
AATGACGACACTGTGTGCGGAAATCACATTGGCAGTGATCGAGATGCAAG
CCATCCCATCGTTGGTCTTCGGGACATCACGGGATGGTAAATATGGTAGG
AGAGAAGCGGGTTCAATTACATCACAACCACCATCAGCAGCACCGGCGGC
GGCAAAAGCAGCAGCGGCAGCAGTCTCCCTCACCCACACAAATGCCACTG
ATCCGCCTTTCAAAGACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTA
CGATGGGATGCGGATAAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGG
ATTTGTAACACAGCAGATCGATAACGGGGTGGAGGAATTGTTCGGGATGC
TGCTCAACTCACCACAGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAG
GAAGGAAGAAGGCGAGGAGGAGAGAGAGGAGTGGGCAATAGAAGATAGTG
ATTCAAGAGCGAAAATGAGCCATGTAAAAAAACGTGTATCGATTAAA
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protein sequence of jgi.p|Nanoce1779_2|588941

>mRNA_4386-protein ID=mRNA_4386-protein|Name=jgi.p|Nanoce1779_2|588941|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MGNKASAQLLPSLDDMLKTFSPAEVQALEARFPTAPLSSPRHQQQSTNNG
SSGSDRKRNGRKQSFPDSTLALVTEAQFVALLGEGYGPSVKRLLLRLFAV
LDTNGTSALEYQEHVGTVYFFNHATATERARVLFYMYEPTSSSSPSPFAT
AVSKAHLSREQMTTLCAEITLAVIEMQAIPSLVFGTSRDGKYGRREAGSI
TSQPPSAAPAAAKAAAAAVSLTHTNATDPPFKDLIGVMVDVAFLRWDADK
DGKLILPEFQGFVTQQIDNGVEELFGMLLNSPQVPRLLFYSDGEEGRRRG
GERGVGNRR*
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mRNA from alignment at scaffold_10:460467..461513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4386 ID=mRNA_4386|Name=jgi.p|Nanoce1779_2|588941|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at scaffold_10:460467..461513- (Nannochloropsis oceanica)
AACAGACGCCTGTCCCACGCCCTCATGCACAAACCAATGCATCACTTGGC
TAGGCAAGGGTAGATAGAATGGGGAACAAAGCGTCGGCGCAGCTCCTACC
GTCGCTGGATGACATGCTCAAAACCTTTTCCCCTGCTGAGGTCCAAGCAC
TCGAGGCACGCTTTCCTACAGCTCCTTTGTCGTCGCCCCGCCATCAGCAG
CAGTCAACAAACAACGGCAGCAGCGGCAGCGACCGGAAACGAAACGGGAG
GAAACAATCTTTTCCTGACTCCACGCTCGCGCTCGTGACCGAAGCACAAT
TTGTGGCTTTGCTTGGGGAGGGGTATGGACCCAGCGTGAAGAGGTTGCTC
CTCCGTCTCTTTGCCGTGCTAGACACCAATGGCACAAGTGCTTTGGAATA
CCAGGAGCACGTGGGAACAGTTTACTTTTTCAATCATGCCACCGCGACAG
AGCGGGCCCGTGTCTTGTTTTACATGTACGAGCCGACATCCTCCTCCTCT
CCCTCTCCTTTTGCCACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACA
AATGACGACACTGTGTGCGGAAATCACATTGGCAGTGATCGAGATGCAAG
CCATCCCATCGTTGGTCTTCGGGACATCACGGGATGGTAAATATGGTAGG
AGAGAAGCGGGTTCAATTACATCACAACCACCATCAGCAGCACCGGCGGC
GGCAAAAGCAGCAGCGGCAGCAGTCTCCCTCACCCACACAAATGCCACTG
ATCCGCCTTTCAAAGACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTA
CGATGGGATGCGGATAAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGG
ATTTGTAACACAGCAGATCGATAACGGGGTGGAGGAATTGTTCGGGATGC
TGCTCAACTCACCACAGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAG
GAAGGAAGAAGGCGAGGAGGAGAGAGAGGAGTGGGCAATAGAAGATAGTG
ATTCAAGAGCGAAAATGAGCCATGTAAAAAAACGTGTATCGATTAAA
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Coding sequence (CDS) from alignment at scaffold_10:460467..461513-

>mRNA_4386 ID=mRNA_4386|Name=jgi.p|Nanoce1779_2|588941|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_10:460467..461513- (Nannochloropsis oceanica)
ATGGGGAACAAAGCGTCGGCGCAGCTCCTACCGTCGCTGGATGACATGCT
CAAAACCTTTTCCCCTGCTGAGGTCCAAGCACTCGAGGCACGCTTTCCTA
CAGCTCCTTTGTCGTCGCCCCGCCATCAGCAGCAGTCAACAAACAACGGC
AGCAGCGGCAGCGACCGGAAACGAAACGGGAGGAAACAATCTTTTCCTGA
CTCCACGCTCGCGCTCGTGACCGAAGCACAATTTGTGGCTTTGCTTGGGG
AGGGGTATGGACCCAGCGTGAAGAGGTTGCTCCTCCGTCTCTTTGCCGTG
CTAGACACCAATGGCACAAGTGCTTTGGAATACCAGGAGCACGTGGGAAC
AGTTTACTTTTTCAATCATGCCACCGCGACAGAGCGGGCCCGTGTCTTGT
TTTACATGTACGAGCCGACATCCTCCTCCTCTCCCTCTCCTTTTGCCACG
GCAGTCAGCAAGGCTCACCTGAGCAGAGAACAAATGACGACACTGTGTGC
GGAAATCACATTGGCAGTGATCGAGATGCAAGCCATCCCATCGTTGGTCT
TCGGGACATCACGGGATGGTAAATATGGTAGGAGAGAAGCGGGTTCAATT
ACATCACAACCACCATCAGCAGCACCGGCGGCGGCAAAAGCAGCAGCGGC
AGCAGTCTCCCTCACCCACACAAATGCCACTGATCCGCCTTTCAAAGACT
TGATAGGGGTTATGGTAGACGTGGCTTTTCTACGATGGGATGCGGATAAG
GACGGCAAATTAATCTTGCCTGAGTTTCAGGGATTTGTAACACAGCAGAT
CGATAACGGGGTGGAGGAATTGTTCGGGATGCTGCTCAACTCACCACAGG
TCCCAAGGCTATTGTTTTATAGCGATGGAGAGGAAGGAAGAAGGCGAGGA
GGAGAGAGAGGAGTGGGCAATAGAAGATAG
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Synonyms
Publications