jgi.p|Nanoce1779_2|588939, mRNA_4385 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588939
Unique Name	mRNA_4385
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1864
Alignment location	scaffold_10:458588..460451 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589025
Track	FilteredModels2
ProteinId	588939

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:458588..460451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588939	gene_4385	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588939	mRNA_4385-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4385	CDS_4385	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:458588..460451+
coding sequence from alignment at scaffold_10:458588..460451+

mRNA sequence

>mRNA_4385 ID=mRNA_4385|Name=jgi.p|Nanoce1779_2|588939|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp
GTCTCATCCACTCGAAAGTCATGATGACAAACCCTCATCGCTGCACACAA
CAACGGCGAGCCTTTGAAGCAAAACATCGTCTTACGTGTCAAGGCATCTC
GTAGTCTGACAACACGCACTCCTTTTGGCACACGCTGTACAGGAAGATCA
CGCCACACTCTAGCCCCTGCTGCGAACTGTGATCGAGTGCTAACCTTAGC
TATCAAGAAGAGTCGTCTTAGAGACTAATATGACGTTTGTCTCCTAGAGC
CGATTGCATGATGCAGTATTTGACGCGTCACAATCCTTGAATGACCGACC
ACCCTTGTGCTCGGATCACATCTGTAATCTACATCCTTACCAGCTTCGCC
ATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCTTAATCTCAAC
TGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTGCCAAGACGCA
CAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGAAAGATCAACA
GATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGACCCAGGGGCAG
TGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCCACAGCATTCG
ATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCATCGCCGTAACC
TTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATGGCCACCGCAA
TCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTTCTCTTTGACA
CGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAAGATAACTTTC
CCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGTGGACCCAAGC
AGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTAGGGTGCAAAC
GTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCCTTCTTCCTCC
CTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACTACATAAGTGA
CTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATTTTTTTGGTTC
GAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAGCGAGACGCGG
TACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGGCCGAGATTAA
CAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCGGCAGCAGGCA
CGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGAGAAGAGGACG
GAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGTGTCGCGCAAT
TATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGGGAGGACGCGA
AGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAGGATTGGGCGT
GTGGACCCGTAGCAAGCAAGAAATAGAGTGGGATTTGTTGGGTGACGAGG
GAGCCGGGTGGTCGTCTTGTCCACCTGTCGTGCTGGTGTCCGACGTCTCC
CGATGCGCACCCGTAAAGGAGGGAGAAGACGAGGAGGAAGCAGGAGAAGA
AAAAGGAGACCAAGATAAAGCGAAGGAGATGAAGGAGAAGACGGTGATGA
GGAAGAAGTGCGGGAGAGTGCGGAGGAAGAAGGGAGGAGAGAGGTCTTGA
TGCGCTCCTTGATGGGTGTAAGTATGGTGGACTAGTGTAAGACATGACTC
GAAAAATGAAGGCTAGTGTTCATTGGAAAAGGATGTAAAGGGACGTTATG
GAAGGGGCAGATGTCATTTCAGCCGTTCTTACCACGTTGTTGAAACAGAA
GCAAGTCAAAATACCTTCTCACAGGAATAAGTAACAAGAAAAAGAAGAAC
GTTACGTGCATACA

protein sequence of jgi.p|Nanoce1779_2|588939

>mRNA_4385-protein ID=mRNA_4385-protein|Name=jgi.p|Nanoce1779_2|588939|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTDHPCARITSVIYILTSFAMALILLLARTSEALISTATRSAPCIHAFVL
PRRTTSVRCISISDTIERSTDVRLFSTTNFLQRPRGSASSSSSRAATTSA
TAFDPEQARLFEEERIIAVTFDDKPIKAISKRNGHRNQKGPPLHRAFSVF
LFDTLGRLLLQKRAAAKITFPSTWTNTCCSHPLWTQAELGDDVQPNDPVL
GCKRAAIRKLEQELGIPSSSLAPSDFTYMNRIHYISDSNPEWGEHEIDYI
FLVRKDVELNPNLNEVSETRYVDPRELRGMIRRAEINRGVSREYLLAEEA
AAGTQRVGGRGEGKVGEKRTEEEEVGPVQFTPWCRAIMEKWLFVWWSDVG
EDAKALEKHRDVKRIFRIGRVDP*

mRNA from alignment at scaffold_10:458588..460451+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4385 ID=mRNA_4385|Name=jgi.p|Nanoce1779_2|588939|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_10:458588..460451+ (Nannochloropsis oceanica)
GTCTCATCCACTCGAAAGTCATGATGACAAACCCTCATCGCTGCACACAA
CAACGGCGAGCCTTTGAAGCAAAACATCGTCTTACGTGTCAAGGCATCTC
GTAGTCTGACAACACGCACTCCTTTTGGCACACGCTGTACAGGAAGATCA
CGCCACACTCTAGCCCCTGCTGCGAACTGTGATCGAGTGCTAACCTTAGC
TATCAAGAAGAGTCGTCTTAGAGACTAATATGACGTTTGTCTCCTAGAGC
CGATTGCATGATGCAGTATTTGACGCGTCACAATCCTTGAATGACCGACC
ACCCTTGTGCTCGGATCACATCTGTAATCTACATCCTTACCAGCTTCGCC
ATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCTTAATCTCAAC
TGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTGCCAAGACGCA
CAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGAAAGATCAACA
GATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGACCCAGGGGCAG
TGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCCACAGCATTCG
ATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCATCGCCGTAACC
TTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATGGCCACCGCAA
TCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTTCTCTTTGACA
CGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAAGATAACTTTC
CCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGTGGACCCAAGC
AGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTAGGGTGCAAAC
GTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCCTTCTTCCTCC
CTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACTACATAAGTGA
CTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATTTTTTTGGTTC
GAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAGCGAGACGCGG
TACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGGCCGAGATTAA
CAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCGGCAGCAGGCA
CGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGAGAAGAGGACG
GAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGTGTCGCGCAAT
TATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGGGAGGACGCGA
AGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAGGATTGGGCGT
GTGGACCCGTAGCAAGCAAGAAATAGAGTGGGATTTGTTGGGTGACGAGG
GAGCCGGGTGGTCGTCTTGTCCACCTGTCGTGCTGGTGTCCGACGTCTCC
CGATGCGCACCCGTAAAGGAGGGAGAAGACGAGGAGGAAGCAGGAGAAGA
AAAAGGAGACCAAGATAAAGCGAAGGAGATGAAGGAGAAGACGGTGATGA
GGAAGAAGTGCGGGAGAGTGCGGAGGAAGAAGGGAGGAGAGAGGTCTTGA
TGCGCTCCTTGATGGGTGTAAGTATGGTGGACTAGTGTAAGACATGACTC
GAAAAATGAAGGCTAGTGTTCATTGGAAAAGGATGTAAAGGGACGTTATG
GAAGGGGCAGATGTCATTTCAGCCGTTCTTACCACGTTGTTGAAACAGAA
GCAAGTCAAAATACCTTCTCACAGGAATAAGTAACAAGAAAAAGAAGAAC
GTTACGTGCATACA

Coding sequence (CDS) from alignment at scaffold_10:458588..460451+

>mRNA_4385 ID=mRNA_4385|Name=jgi.p|Nanoce1779_2|588939|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_10:458588..460451+ (Nannochloropsis oceanica)
ATGACCGACCACCCTTGTGCTCGGATCACATCTGTAATCTACATCCTTAC
CAGCTTCGCCATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCT
TAATCTCAACTGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTG
CCAAGACGCACAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGA
AAGATCAACAGATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGAC
CCAGGGGCAGTGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCC
ACAGCATTCGATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCAT
CGCCGTAACCTTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATG
GCCACCGCAATCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTT
CTCTTTGACACGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAA
GATAACTTTCCCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGT
GGACCCAAGCAGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTA
GGGTGCAAACGTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCC
TTCTTCCTCCCTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACT
ACATAAGTGACTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATT
TTTTTGGTTCGAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAG
CGAGACGCGGTACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGG
CCGAGATTAACAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCG
GCAGCAGGCACGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGA
GAAGAGGACGGAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGT
GTCGCGCAATTATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGG
GAGGACGCGAAGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAG
GATTGGGCGTGTGGACCCGTAG

Synonyms

Publications