jgi.p|Nanoce1779_2|588922, mRNA_4381 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588922
Unique Name	mRNA_4381
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1480
Alignment location	scaffold_10:445471..447295 +

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Properties


Property Name	Value
TranscriptId	589008
Track	FilteredModels2
ProteinId	588922

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:445471..447295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588922	gene_4381	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588922	mRNA_4381-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4381	CDS_4381	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:445471..447295+
coding sequence from alignment at scaffold_10:445471..447295+

mRNA sequence

>mRNA_4381 ID=mRNA_4381|Name=jgi.p|Nanoce1779_2|588922|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
AGAAGAAGAGGAGGAGGAGGAGGATAACGATATTTTGATCGAGGGGAGTG
TCGATGGCTTGGTTGAGGAGGATGACGAGGTGGAGGAGGATGGCGAGGAG
GAGGAGAACGAGGAGGAGGAGGAGAACGAGGTGGAGGAAGAGGGAGGGGG
GGAGAAAGAGGAGGAGATGGATGATAATGAGGAAGGGCTTGGAGAGAATG
AAAAAGCGAATGCTGAGGAGAAAAAACCTCCAATGGCATCAATTCCCTTG
CCCACGGGCCTGCAACTCTGCCATGTCAAGACCGTGGGCGGACACAAGGA
TGCTCACCTCTACCACTTCCTCCGACGCTACCCCCGGCCGCACCATCATC
TTCACCAACAGCATCGACCAAACACGCCGCCTTGCCCAGCTCCTCACCCT
TCTTCGCCTCCCCGCCAAAGCCCTGCATGCCAAGATGCAACAGCGTGCCC
GCCTCAAGTCCCTGGATTACTTCCGGTCCCATCAAGCCGCGGTATTGGTT
GCAACCGATGTGGCGGCGCGGGGTTTGGACATCCCCCTTGTCGAGCACGT
CATCCATTATGACTTACCCCGTTCCTTGGAGGTGTTTGTGCATAGAGCAG
GGAGGACCGCTCGGGCGAATAGGAATGGTTTGTCGTTTTCCTTGGTCGCG
CCACGGGACGAAAAAATGCATGCCGAAGTGTGCCGGGCTTTGCTTTCCGG
TCAGACAGCGGAGGAGGACGAGGAGGAAGAAGAAAGGGAAGGAAAGGAGG
AAGAGCAAAGGCAGCCGTTGAGCATGACGACGTTTCCGGTAGACTTACGG
GAATTGAATGGGGCGAGGGAACGCGTGCATTTGGCGGGGAAGATAGTGGG
GCATGAGCAGGAGGCAGGGCGACAACAGGCGAGTCAAAGTTGGTTTTTAA
AGAGGGCTCGTGAGGCTGATCTTGAACTGGATGCAGATTTGTTGGAAGAG
ACGGAGGCGGGCACCGAAAAGGAGAGGCAGAGAGCGAGACAGATGGAACT
CGATCGACAGAGATTGGATGAGTTGTTGTCGGCGCCGCTGGTCCAGCAGA
GGAGGAAGTTTATTAATGTGGCTGAAAAATTGCAAGTGTTGAAGCAGGCA
GAGGGGTGTAAGGATGCGATACAGGTGGCTGCGAAAACAATTTTGGCGGC
GAAGATGGCACGTAGGCAGGATAGGAAAAATAGGAAGGGAGGAAACGGGG
GGACATAAGGGGAAGGAATGCAGCAAATGAGGAGAGGTGAGATACGGCCT
GAATTTTAGAGCGAGAGGTGAAGAAAAGTAATTATTGCACGAGGAAAAGT
ACCGGAAGAGATTGACAAAGGCAGAAAAAAACGAGAAGAATGAACCCAAG
CAGGACTCCTCTGTGTGTTCATGCTTGTATAGTATGACCAAAATTTGCCA
TCCAGAGAGAGAGGGTGCTTGTTTCGTTGGGAGAACCCCGCAGATAAAAT
TTAAAAAAAGGCGAAAGGAGCGAATGAGAA

protein sequence of jgi.p|Nanoce1779_2|588922

>mRNA_4381-protein ID=mRNA_4381-protein|Name=jgi.p|Nanoce1779_2|588922|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MIMRKGLERMKKRMLRRKNLQWHQFPCPRACNSAMSRPWADTRMLTSTTS
SDATPGRTIIFTNSIDQTRRLAQLLTLLRLPAKALHAKMQQRARLKSLDY
FRSHQAAVLVATDVAARGLDIPLVEHVIHYDLPRSLEVFVHRAGRTARAN
RNGLSFSLVAPRDEKMHAEVCRALLSGQTAEEDEEEEEREGKEEEQRQPL
SMTTFPVDLRELNGARERVHLAGKIVGHEQEAGRQQASQSWFLKRAREAD
LELDADLLEETEAGTEKERQRARQMELDRQRLDELLSAPLVQQRRKFINV
AEKLQVLKQAEGCKDAIQVAAKTILAAKMARRQDRKNRKGGNGGT*

mRNA from alignment at scaffold_10:445471..447295+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4381 ID=mRNA_4381|Name=jgi.p|Nanoce1779_2|588922|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_10:445471..447295+ (Nannochloropsis oceanica)
AGAAGAAGAGGAGGAGGAGGAGGATAACGATATTTTGATCGAGGGGAGTG
TCGATGGCTTGGTTGAGGAGGATGACGAGGTGGAGGAGGATGGCGAGGAG
GAGGAGAACGAGGAGGAGGAGGAGAACGAGGTGGAGGAAGAGGGAGGGGG
GGAGAAAGAGGAGGAGATGGATGATAATGAGGAAGGGCTTGGAGAGAATG
AAAAAGCGAATGCTGAGGAGAAAAAACCTCCAATGGCATCAATTCGTGAG
TTGCCTCCTCCCGTGACGCGTCAGACATTGATTTTCAGCGCGACCCTCGT
CATGCCCGAAGAGATGCGTGAGGGAAAAGGAGTGAAGAAGGGAGGGAAGA
AACAGCAGAAGAAGGGGAAGGGAGGGAAGGATGGTAAAGATGTGATGGGG
AGGATCATGCGTGAGGTCGGCATGCGCGGGGTACCTGCCATAATCGATCT
GACCAGTGGTTCCGCCAAGCAAGAAGACGCGGCAGCAGCAGCAGCTGCCA
CTGCTGTTGCTGCCGCGGATGCCCACCCTCTCCCTCTCCCCACAACTCCT
CGTACCGCCACCACTGCTACTGTGGTTGCTCCTTCCCTAGCCTTGCCCAC
GGGCCTGCAACTCTGCCATGTCAAGACCGTGGGCGGACACAAGGATGCTC
ACCTCTACCACTTCCTCCGACGCTACCCCCGGCCGCACCATCATCTTCAC
CAACAGCATCGACCAAACACGCCGCCTTGCCCAGCTCCTCACCCTTCTTC
GCCTCCCCGCCAAAGCCCTGCATGCCAAGATGCAACAGCGTGCCCGCCTC
AAGTCCCTGGATTACTTCCGGTCCCATCAAGCCGCGGTATTGGTTGCAAC
CGATGTGGCGGCGCGGGGTTTGGACATCCCCCTTGTCGAGCACGTCATCC
ATTATGACTTACCCCGTTCCTTGGAGGTGTTTGTGCATAGAGCAGGGAGG
ACCGCTCGGGCGAATAGGAATGGTTTGTCGTTTTCCTTGGTCGCGCCACG
GGACGAAAAAATGCATGCCGAAGTGTGCCGGGCTTTGCTTTCCGGTCAGA
CAGCGGAGGAGGACGAGGAGGAAGAAGAAAGGGAAGGAAAGGAGGAAGAG
CAAAGGCAGCCGTTGAGCATGACGACGTTTCCGGTAGACTTACGGGAATT
GAATGGGGCGAGGGAACGCGTGCATTTGGCGGGGAAGATAGTGGGGCATG
AGCAGGAGGCAGGGCGACAACAGGCGAGTCAAAGTTGGTTTTTAAAGAGG
GCTCGTGAGGCTGATCTTGAACTGGATGCAGATTTGTTGGAAGAGACGGA
GGCGGGCACCGAAAAGGAGAGGCAGAGAGCGAGACAGATGGAACTCGATC
GACAGAGATTGGATGAGTTGTTGTCGGCGCCGCTGGTCCAGCAGAGGAGG
AAGTTTATTAATGTGGCTGAAAAATTGCAAGTGTTGAAGCAGGCAGAGGG
GTGTAAGGATGCGATACAGGTGGCTGCGAAAACAATTTTGGCGGCGAAGA
TGGCACGTAGGCAGGATAGGAAAAATAGGAAGGGAGGAAACGGGGGGACA
TAAGGGGAAGGAATGCAGCAAATGAGGAGAGGTGAGATACGGCCTGAATT
TTAGAGCGAGAGGTGAAGAAAAGTAATTATTGCACGAGGAAAAGTACCGG
AAGAGATTGACAAAGGCAGAAAAAAACGAGAAGAATGAACCCAAGCAGGA
CTCCTCTGTGTGTTCATGCTTGTATAGTATGACCAAAATTTGCCATCCAG
AGAGAGAGGGTGCTTGTTTCGTTGGGAGAACCCCGCAGATAAAATTTAAA
AAAAGGCGAAAGGAGCGAATGAGAA

Coding sequence (CDS) from alignment at scaffold_10:445471..447295+

>mRNA_4381 ID=mRNA_4381|Name=jgi.p|Nanoce1779_2|588922|organism=Nannochloropsis oceanica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_10:445471..447295+ (Nannochloropsis oceanica)
ATGATAATGAGGAAGGGCTTGGAGAGAATGAAAAAGCGAATGCTGAGGAG
AAAAAACCTCCAATGGCATCAATTCCCTTGCCCACGGGCCTGCAACTCTG
CCATGTCAAGACCGTGGGCGGACACAAGGATGCTCACCTCTACCACTTCC
TCCGACGCTACCCCCGGCCGCACCATCATCTTCACCAACAGCATCGACCA
AACACGCCGCCTTGCCCAGCTCCTCACCCTTCTTCGCCTCCCCGCCAAAG
CCCTGCATGCCAAGATGCAACAGCGTGCCCGCCTCAAGTCCCTGGATTAC
TTCCGGTCCCATCAAGCCGCGGTATTGGTTGCAACCGATGTGGCGGCGCG
GGGTTTGGACATCCCCCTTGTCGAGCACGTCATCCATTATGACTTACCCC
GTTCCTTGGAGGTGTTTGTGCATAGAGCAGGGAGGACCGCTCGGGCGAAT
AGGAATGGTTTGTCGTTTTCCTTGGTCGCGCCACGGGACGAAAAAATGCA
TGCCGAAGTGTGCCGGGCTTTGCTTTCCGGTCAGACAGCGGAGGAGGACG
AGGAGGAAGAAGAAAGGGAAGGAAAGGAGGAAGAGCAAAGGCAGCCGTTG
AGCATGACGACGTTTCCGGTAGACTTACGGGAATTGAATGGGGCGAGGGA
ACGCGTGCATTTGGCGGGGAAGATAGTGGGGCATGAGCAGGAGGCAGGGC
GACAACAGGCGAGTCAAAGTTGGTTTTTAAAGAGGGCTCGTGAGGCTGAT
CTTGAACTGGATGCAGATTTGTTGGAAGAGACGGAGGCGGGCACCGAAAA
GGAGAGGCAGAGAGCGAGACAGATGGAACTCGATCGACAGAGATTGGATG
AGTTGTTGTCGGCGCCGCTGGTCCAGCAGAGGAGGAAGTTTATTAATGTG
GCTGAAAAATTGCAAGTGTTGAAGCAGGCAGAGGGGTGTAAGGATGCGAT
ACAGGTGGCTGCGAAAACAATTTTGGCGGCGAAGATGGCACGTAGGCAGG
ATAGGAAAAATAGGAAGGGAGGAAACGGGGGGACATAAATGATAATGAGG
AAGGGCTTGGAGAGAATGAAAAAGCGAATGCTGAGGAGAAAAAACCTCCA
ATGGCATCAATTCCCTTGCCCACGGGCCTGCAACTCTGCCATGTCAAGAC
CGTGGGCGGACACAAGGATGCTCACCTCTACCACTTCCTCCGACGCTACC
CCCGGCCGCACCATCATCTTCACCAACAGCATCGACCAAACACGCCGCCT
TGCCCAGCTCCTCACCCTTCTTCGCCTCCCCGCCAAAGCCCTGCATGCCA
AGATGCAACAGCGTGCCCGCCTCAAGTCCCTGGATTACTTCCGGTCCCAT
CAAGCCGCGGTATTGGTTGCAACCGATGTGGCGGCGCGGGGTTTGGACAT
CCCCCTTGTCGAGCACGTCATCCATTATGACTTACCCCGTTCCTTGGAGG
TGTTTGTGCATAGAGCAGGGAGGACCGCTCGGGCGAATAGGAATGGTTTG
TCGTTTTCCTTGGTCGCGCCACGGGACGAAAAAATGCATGCCGAAGTGTG
CCGGGCTTTGCTTTCCGGTCAGACAGCGGAGGAGGACGAGGAGGAAGAAG
AAAGGGAAGGAAAGGAGGAAGAGCAAAGGCAGCCGTTGAGCATGACGACG
TTTCCGGTAGACTTACGGGAATTGAATGGGGCGAGGGAACGCGTGCATTT
GGCGGGGAAGATAGTGGGGCATGAGCAGGAGGCAGGGCGACAACAGGCGA
GTCAAAGTTGGTTTTTAAAGAGGGCTCGTGAGGCTGATCTTGAACTGGAT
GCAGATTTGTTGGAAGAGACGGAGGCGGGCACCGAAAAGGAGAGGCAGAG
AGCGAGACAGATGGAACTCGATCGACAGAGATTGGATGAGTTGTTGTCGG
CGCCGCTGGTCCAGCAGAGGAGGAAGTTTATTAATGTGGCTGAAAAATTG
CAAGTGTTGAAGCAGGCAGAGGGGTGTAAGGATGCGATACAGGTGGCTGC
GAAAACAATTTTGGCGGCGAAGATGGCACGTAGGCAGGATAGGAAAAATA
GGAAGGGAGGAAACGGGGGGACATAA

Synonyms

Publications