Properties
| Property Name | Value |
|---|
| TranscriptId | 541759 |
| Track | FilteredModels2 |
| ProteinId | 541673 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:443655..444762 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4380 ID=mRNA_4380|Name=jgi.p|Nanoce1779_2|541673|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ACAGCTCACACACACTCGACGAAATGCCCAAGCGCAAGAAGCAACCAGGG
GCCAATGGATGGGATGCCTTGCCCTGGTCAAGCGTCAAGGTCAAAGAAGG
CGACCTGGGCGGGGCAGACGATTGCTTTGCTTTCACCATAGAGGAGGTGG
ATGGGAGCCATTATGTGATCGAGAAAGATACTTTGGGGGGCTTCAGTGTC
AAGTGCCATCGTGGTGGGGGCAGCGGCGGCGCAAGTGACGTTCAAGGAGC
GGGAGGGAAAGATGTGAGGGCCGCCGTTTTGGAGGGTAATGTTATTAAGC
AGAAGCAGAAGAAAGAGAAGCCAACGAAGAAACAAAAAATCAGCAAAAAG
GAGAAGGAAGAGGAAGAGGAAGAATTAGAGCTGGGGGAAGGACCAGGGGC
GGCAGAAGTGGTGGAGATAGAGTACGAGACTGTCAGCTGCCCTGCAGGGA
GGGCATCTGCTGGTGCGACAAGAGCGATCGAAGCTCATGAAAAGCCAAGG
GAGGCAGATGACAAAAAAGGGGACGCCCCTGCCAAGCAGCCCAAGAAGAA
GGAGCGAAAGAGAGACAAGAAACCTGCCACTGGTGGTGGTGGTGCTGCTG
CTGCTGCTCCAGCCAACCCCACCGTCTCTCCTCCAAGTCCTCAGACTCCT
CTCGTGGATATCAAGGCACAACTATCGCATTGGTCCCCTGCAGCTTTGAG
CGGCGTCTCCCTTCACCCTTTGCTATTGCGCAACCTCCACCGTCAAGGAT
TTTACAGCCCCACCCCAATTCAACGGCGAGCTCTGCCTCTGGCCATGCCA
GGAGGAGGAGGAGGAGGAGGAGGGGGAAAGGATTTGATGGGCGCCGCAGA
AACGGGGTCGGGGAAGACATTAGCTTACGGCTTGCCTATATTGGATTACT
T back to topprotein sequence of jgi.p|Nanoce1779_2|541673 >mRNA_4380-protein ID=mRNA_4380-protein|Name=jgi.p|Nanoce1779_2|541673|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MPKRKKQPGANGWDALPWSSVKVKEGDLGGADDCFAFTIEEVDGSHYVIE
KDTLGGFSVKCHRGGGSGGASDVQGAGGKDVRAAVLEGNVIKQKQKKEKP
TKKQKISKKEKEEEEEELELGEGPGAAEVVEIEYETVSCPAGRASAGATR
AIEAHEKPREADDKKGDAPAKQPKKKERKRDKKPATGGGGAAAAAPANPT
VSPPSPQTPLVDIKAQLSHWSPAALSGVSLHPLLLRNLHRQGFYSPTPIQ
RRALPLAMPGGGGGGGGGKDLMGAAETGSGKTLAYGLPILDY back to topmRNA from alignment at scaffold_10:443655..444762+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4380 ID=mRNA_4380|Name=jgi.p|Nanoce1779_2|541673|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp|location=Sequence derived from alignment at scaffold_10:443655..444762+ (Nannochloropsis oceanica)
ACAGCTCACACACACTCGACGAAATGCCCAAGCGCAAGAAGCAACCAGGG
GCCAATGGATGGGATGCCTTGCCCTGGTCAAGCGTCAAGGTACGTGGGGA
CATAGGGAAATCGATGAACGGCTATCACGCGGGCCCTGGCGGATCCTGGT
GCATACGCATGGCCGCAAAGAATAGCGTGTGCTGGTGATAAGCCTAGGAT
CCTAGTGGGCCTGAGTGCTCCCGTTTTGTCGACCAGTTCCATGTCAATAT
CTTTCAATCCGTCCATCTCAAGCGCGCTCCCCCCTCTTCCACGCAGGTCA
AAGAAGGCGACCTGGGCGGGGCAGACGATTGCTTTGCTTTCACCATAGAG
GAGGTGGATGGGAGCCATTATGTGATCGAGAAAGATACTTTGGGGGGCTT
CAGTGTCAAGTGCCATCGTGGTGGGGGCAGCGGCGGCGCAAGTGACGTTC
AAGGAGCGGGAGGGAAAGATGTGAGGGCCGCCGTTTTGGAGGGTAATGTT
ATTAAGCAGAAGCAGAAGAAAGAGAAGCCAACGAAGAAACAAAAAATCAG
CAAAAAGGAGAAGGAAGAGGAAGAGGAAGAATTAGAGCTGGGGGAAGGAC
CAGGGGCGGCAGAAGTGGTGGAGATAGAGTACGAGACTGTCAGCTGCCCT
GCAGGGAGGGCATCTGCTGGTGCGACAAGAGCGATCGAAGCTCATGAAAA
GCCAAGGGAGGCAGATGACAAAAAAGGGGACGCCCCTGCCAAGCAGCCCA
AGAAGAAGGAGCGAAAGAGAGACAAGAAACCTGCCACTGGTGGTGGTGGT
GCTGCTGCTGCTGCTCCAGCCAACCCCACCGTCTCTCCTCCAAGTCCTCA
GACTCCTCTCGTGGATATCAAGGCACAACTATCGCATTGGTCCCCTGCAG
CTTTGAGCGGCGTCTCCCTTCACCCTTTGCTATTGCGCAACCTCCACCGT
CAAGGATTTTACAGCCCCACCCCAATTCAACGGCGAGCTCTGCCTCTGGC
CATGCCAGGAGGAGGAGGAGGAGGAGGAGGGGGAAAGGATTTGATGGGCG
CCGCAGAAACGGGGTCGGGGAAGACATTAGCTTACGGCTTGCCTATATTG
GATTACTT back to topCoding sequence (CDS) from alignment at scaffold_10:443655..444762+ >mRNA_4380 ID=mRNA_4380|Name=jgi.p|Nanoce1779_2|541673|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_10:443655..444762+ (Nannochloropsis oceanica)
ATGCCCAAGCGCAAGAAGCAACCAGGGGCCAATGGATGGGATGCCTTGCC
CTGGTCAAGCGTCAAGGTCAAAGAAGGCGACCTGGGCGGGGCAGACGATT
GCTTTGCTTTCACCATAGAGGAGGTGGATGGGAGCCATTATGTGATCGAG
AAAGATACTTTGGGGGGCTTCAGTGTCAAGTGCCATCGTGGTGGGGGCAG
CGGCGGCGCAAGTGACGTTCAAGGAGCGGGAGGGAAAGATGTGAGGGCCG
CCGTTTTGGAGGGTAATGTTATTAAGCAGAAGCAGAAGAAAGAGAAGCCA
ACGAAGAAACAAAAAATCAGCAAAAAGGAGAAGGAAGAGGAAGAGGAAGA
ATTAGAGCTGGGGGAAGGACCAGGGGCGGCAGAAGTGGTGGAGATAGAGT
ACGAGACTGTCAGCTGCCCTGCAGGGAGGGCATCTGCTGGTGCGACAAGA
GCGATCGAAGCTCATGAAAAGCCAAGGGAGGCAGATGACAAAAAAGGGGA
CGCCCCTGCCAAGCAGCCCAAGAAGAAGGAGCGAAAGAGAGACAAGAAAC
CTGCCACTGGTGGTGGTGGTGCTGCTGCTGCTGCTCCAGCCAACCCCACC
GTCTCTCCTCCAAGTCCTCAGACTCCTCTCGTGGATATCAAGGCACAACT
ATCGCATTGGTCCCCTGCAGCTTTGAGCGGCGTCTCCCTTCACCCTTTGC
TATTGCGCAACCTCCACCGTCAAGGATTTTACAGCCCCACCCCAATTCAA
CGGCGAGCTCTGCCTCTGGCCATGCCAGGAGGAGGAGGAGGAGGAGGAGG
GGGAAAGGATTTGATGGGCGCCGCAGAAACGGGGTCGGGGAAGACATTAG
CTTACGGCTTGCCTATATTGGATTACATGCCCAAGCGCAAGAAGCAACCA
GGGGCCAATGGATGGGATGCCTTGCCCTGGTCAAGCGTCAAGGTCAAAGA
AGGCGACCTGGGCGGGGCAGACGATTGCTTTGCTTTCACCATAGAGGAGG
TGGATGGGAGCCATTATGTGATCGAGAAAGATACTTTGGGGGGCTTCAGT
GTCAAGTGCCATCGTGGTGGGGGCAGCGGCGGCGCAAGTGACGTTCAAGG
AGCGGGAGGGAAAGATGTGAGGGCCGCCGTTTTGGAGGGTAATGTTATTA
AGCAGAAGCAGAAGAAAGAGAAGCCAACGAAGAAACAAAAAATCAGCAAA
AAGGAGAAGGAAGAGGAAGAGGAAGAATTAGAGCTGGGGGAAGGACCAGG
GGCGGCAGAAGTGGTGGAGATAGAGTACGAGACTGTCAGCTGCCCTGCAG
GGAGGGCATCTGCTGGTGCGACAAGAGCGATCGAAGCTCATGAAAAGCCA
AGGGAGGCAGATGACAAAAAAGGGGACGCCCCTGCCAAGCAGCCCAAGAA
GAAGGAGCGAAAGAGAGACAAGAAACCTGCCACTGGTGGTGGTGGTGCTG
CTGCTGCTGCTCCAGCCAACCCCACCGTCTCTCCTCCAAGTCCTCAGACT
CCTCTCGTGGATATCAAGGCACAACTATCGCATTGGTCCCCTGCAGCTTT
GAGCGGCGTCTCCCTTCACCCTTTGCTATTGCGCAACCTCCACCGTCAAG
GATTTTACAGCCCCACCCCAATTCAACGGCGAGCTCTGCCTCTGGCCATG
CCAGGAGGAGGAGGAGGAGGAGGAGGGGGAAAGGATTTGATGGGCGCCGC
AGAAACGGGGTCGGGGAAGACATTAGCTTACGGCTTGCCTATATTGGATT
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