jgi.p|Nanoce1779_2|577324, mRNA_438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577324
Unique NamemRNA_438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_3:1080228..1081661 -

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Properties
Property NameValue
TranscriptId577410
TrackFilteredModels2
ProteinId577324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1080228..1081661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577324gene_438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577324mRNA_438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_438CDS_438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_438 ID=mRNA_438|Name=jgi.p|Nanoce1779_2|577324|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
AACAGGTGCTATGAAGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGG
ACGACACCCTGGTGAAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCG
GTCACCGCTCCTACGTCGGACCGCACGCGCATCTACAGTGATGGCTATTC
GACCCCCAAGTCCTACACATTGGAAGTCGATCCAAAATTTTACAAGCGAG
TATGTGATGCTGACGATGTGTGGACACGCACACAGGGGGCCTTTGCTCTC
CTCATGCTCTGGGGCGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTG
GCCCTATTTAGTAATGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAG
TGATCATGGCATATCCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTT
ATTCGGTTCATCTTGAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTT
GTATTTGGAGGAGTCGATGAAGCAGATCGACACCAGCGAGTCTGTCCTCC
TCTGCCAGCATCCGCACGGTCTCTTCACCTACGGCTTCATTCAGAACGGG
TCCGCCGCCCGCATCGATGCCCGCAAACCAGAGGTTTATGTGCCTGCCGC
ATTTCGTCACATGAAACCCAACGCCAAGGCCTTCGTGGAGCCCTTGCTTT
TCAAAATCCCGCTCATCCGTCACTTCATTACCGCCTTCGGCAATGCCGCT
CCGGCGACAAAGAAAGAAATGCACCGGCTCATGTCCACCAAAATTCCCCT
GGGGCTTCTACCCGGTGGGTCGGAAGAGATCATACTAAGCCACCACGGCC
ATGAGCGGGCCTACATACTTAAACGGAAAGGCTTCCTCAAGTACGCATTA
CAACATGGCTACACGATTTGCATTGGATACACGTTCGGGGAGTCCGACTC
GTACCGCACCTTGGACTGGGGCGTGAAGTTTCGTATGTGGTATCTGAAAA
CCTTCCGTGTTCCACTTTTCGCGTGCTGGGGGATTTGGTGGTGTCCCCTC
TTGCCGCGGGGGCAGGTGGCGCTTGAGACAGTCGTTGGGAACCCGTTTCG
GTTGCCCAAGATCTCAGATCCGAGCCAGGAGGATATTGACAAGTGGCATG
CGGTGTATGTGCAAAAACTTGTGGATCTGTTTGATCGGAACAAAGCCAAG
TTCGGGTATGGGGACAGGGAGCTGGAGCTTTATTAGTTCTTTTCTGTGTA
GCTATCCTACAAAGCTTGAGTTTTGTGAGGCAGGGAAAGAGGGAGGGT
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protein sequence of jgi.p|Nanoce1779_2|577324

>mRNA_438-protein ID=mRNA_438-protein|Name=jgi.p|Nanoce1779_2|577324|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MKKILRIPESPISDDTLVKNGGKKTELSTPVTAPTSDRTRIYSDGYSTPK
SYTLEVDPKFYKRVCDADDVWTRTQGAFALLMLWGVWLAGSFSVFWWPYL
VMKGYYTAALVMAVIMAYPYVVKVKQSPAFIRFILSGAGWFKGGTCLYLE
ESMKQIDTSESVLLCQHPHGLFTYGFIQNGSAARIDARKPEVYVPAAFRH
MKPNAKAFVEPLLFKIPLIRHFITAFGNAAPATKKEMHRLMSTKIPLGLL
PGGSEEIILSHHGHERAYILKRKGFLKYALQHGYTICIGYTFGESDSYRT
LDWGVKFRMWYLKTFRVPLFACWGIWWCPLLPRGQVALETVVGNPFRLPK
ISDPSQEDIDKWHAVYVQKLVDLFDRNKAKFGYGDRELELY*
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mRNA from alignment at scaffold_3:1080228..1081661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_438 ID=mRNA_438|Name=jgi.p|Nanoce1779_2|577324|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_3:1080228..1081661- (Nannochloropsis oceanica)
AACAGGTGCTATGAAGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGG
ACGACACCCTGGTGAAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCG
GTCACCGCTCCTACGTCGGACCGCACGCGCATCTACAGTGATGGCTATTC
GACCCCCAAGTCCTACACATTGGAAGTCGATCCAAAATTTTACAAGCGAG
TATGTGATGCTGACGATGTGTGGACACGCACACAGGGGGCCTTTGCTCTC
CTCATGCTCTGGGGCGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTG
GCCCTATTTAGTAATGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAG
TGATCATGGCATATCCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTT
ATTCGGTTCATCTTGAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTT
GTATTTGGAGGAGTCGATGAAGCAGATCGACACCAGCGAGGTACGTCACG
CCAAGCGCGATTAAAGTGGATATAGTGACGCTTGTATGTTGCAGTTGAGA
CTTTCATGTGCCTCCATTTCTGTGCTGGCGCTTTCCTTTCGTGGTATTCC
CTCCTACCCTCTTCCTCATCATCCAACCCCGTGCTTACTCGTCCTCATCC
TCCACTCATTCCCAACCTACGATTAGTCTGTCCTCCTCTGCCAGCATCCG
CACGGTCTCTTCACCTACGGCTTCATTCAGAACGGGTCCGCCGCCCGCAT
CGATGCCCGCAAACCAGAGGTTTATGTGCCTGCCGCATTTCGTCACATGA
AACCCAACGCCAAGGCCTTCGTGGAGCCCTTGCTTTTCAAAATCCCGCTC
ATCCGTCACTTCATTACCGCCTTCGGCAATGCCGCTCCGGCGACAAAGAA
AGAAATGCACCGGCTCATGTCCACCAAAATTCCCCTGGGGCTTCTACCCG
GTGGGTCGGAAGAGATCATACTAAGCCACCACGGCCATGAGCGGGCCTAC
ATACTTAAACGGAAAGGCTTCCTCAAGTACGCATTACAACATGGCTACAC
GATTTGCATTGGATACACGTTCGGGGAGTCCGACTCGTACCGCACCTTGG
ACTGGGGCGTGAAGTTTCGTATGTGGTATCTGAAAACCTTCCGTGTTCCA
CTTTTCGCGTGCTGGGGGATTTGGTGGTGTCCCCTCTTGCCGCGGGGGCA
GGTGGCGCTTGAGACAGTCGTTGGGAACCCGTTTCGGTTGCCCAAGATCT
CAGATCCGAGCCAGGAGGATATTGACAAGTGGCATGCGGTGTATGTGCAA
AAACTTGTGGATCTGTTTGATCGGAACAAAGCCAAGTTCGGGTATGGGGA
CAGGGAGCTGGAGCTTTATTAGTTCTTTTCTGTGTAGCTATCCTACAAAG
CTTGAGTTTTGTGAGGCAGGGAAAGAGGGAGGGT
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Coding sequence (CDS) from alignment at scaffold_3:1080228..1081661-

>mRNA_438 ID=mRNA_438|Name=jgi.p|Nanoce1779_2|577324|organism=Nannochloropsis oceanica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_3:1080228..1081661- (Nannochloropsis oceanica)
TCTGTCCTCCTCTGCCAGCATCCGCACGGTCTCTTCACCTACGGCTTCAT
TCAGAACGGGTCCGCCGCCCGCATCGATGCCCGCAAACCAGAGGTTTATG
TGCCTGCCGCATTTCGTCACATGAAACCCAACGCCAAGGCCTTCGTGGAG
CCCTTGCTTTTCAAAATCCCGCTCATCCGTCACTTCATTACCGCCTTCGG
CAATGCCGCTCCGGCGACAAAGAAAGAAATGCACCGGCTCATGTCCACCA
AAATTCCCCTGGGGCTTCTACCCGGTGGGTCGGAAGAGATCATACTAAGC
CACCACGGCCATGAGCGGGCCTACATACTTAAACGGAAAGGCTTCCTCAA
GTACGCATTACAACATGGCTACACGATTTGCATTGGATACACGTTCGGGG
AGTCCGACTCGTACCGCACCTTGGACTGGGGCGTGAAGTTTCGTATGTGG
TATCTGAAAACCTTCCGTGTTCCACTTTTCGCGTGCTGGGGGATTTGGTG
GTGTCCCCTCTTGCCGCGGGGGCAGGTGGCGCTTGAGACAGTCGTTGGGA
ACCCGTTTCGGTTGCCCAAGATCTCAGATCCGAGCCAGGAGGATATTGAC
AAGTGGCATGCGGTGTATGTGCAAAAACTTGTGGATCTGTTTGATCGGAA
CAAAGCCAAGTTCGGGTATGGGGACAGGGAGCTGGAGCTTTATTAGATGA
AGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGGACGACACCCTGGTG
AAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCGGTCACCGCTCCTAC
GTCGGACCGCACGCGCATCTACAGTGATGGCTATTCGACCCCCAAGTCCT
ACACATTGGAAGTCGATCCAAAATTTTACAAGCGAGTATGTGATGCTGAC
GATGTGTGGACACGCACACAGGGGGCCTTTGCTCTCCTCATGCTCTGGGG
CGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTGGCCCTATTTAGTAA
TGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAGTGATCATGGCATAT
CCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTTATTCGGTTCATCTT
GAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTTGTATTTGGAGGAGT
CGATGAAGCAGATCGACACCAGCGAGTCTGTCCTCCTCTGCCAGCATCCG
CACGGTCTCTTCACCTACGGCTTCATTCAGAACGGGTCCGCCGCCCGCAT
CGATGCCCGCAAACCAGAGGTTTATGTGCCTGCCGCATTTCGTCACATGA
AACCCAACGCCAAGGCCTTCGTGGAGCCCTTGCTTTTCAAAATCCCGCTC
ATCCGTCACTTCATTACCGCCTTCGGCAATGCCGCTCCGGCGACAAAGAA
AGAAATGCACCGGCTCATGTCCACCAAAATTCCCCTGGGGCTTCTACCCG
GTGGGTCGGAAGAGATCATACTAAGCCACCACGGCCATGAGCGGGCCTAC
ATACTTAAACGGAAAGGCTTCCTCAAGTACGCATTACAACATGGCTACAC
GATTTGCATTGGATACACGTTCGGGGAGTCCGACTCGTACCGCACCTTGG
ACTGGGGCGTGAAGTTTCGTATGTGGTATCTGAAAACCTTCCGTGTTCCA
CTTTTCGCGTGCTGGGGGATTTGGTGGTGTCCCCTCTTGCCGCGGGGGCA
GGTGGCGCTTGAGACAGTCGTTGGGAACCCGTTTCGGTTGCCCAAGATCT
CAGATCCGAGCCAGGAGGATATTGACAAGTGGCATGCGGTGTATGTGCAA
AAACTTGTGGATCTGTTTGATCGGAACAAAGCCAAGTTCGGGTATGGGGA
CAGGGAGCTGGAGCTTTATTAGATGAAGAAAATCTTGCGCATCCCGGAGT
CGCCCATCTCGGACGACACCCTGGTGAAGAATGGAGGCAAGAAGACCGAG
CTCTCCACGCCGGTCACCGCTCCTACGTCGGACCGCACGCGCATCTACAG
TGATGGCTATTCGACCCCCAAGTCCTACACATTGGAAGTCGATCCAAAAT
TTTACAAGCGAGTATGTGATGCTGACGATGTGTGGACACGCACACAGGGG
GCCTTTGCTCTCCTCATGCTCTGGGGCGTTTGGCTTGCCGGGTCCTTTTC
TGTGTTTTGGTGGCCCTATTTAGTAATGAAGGGGTACTACACTGCAGCCC
TTGTCATGGCAGTGATCATGGCATATCCGTATGTTGTCAAGGTCAAGCAA
AGCCCGGCATTTATTCGGTTCATCTTGAGCGGCGCGGGTTGGTTTAAGGG
CGGGACTTGTTTGTATTTGGAGGAGTCGATGAAGCAGATCGACACCAGCG
AG
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Synonyms
Publications