jgi.p|Nanoce1779_2|670753, mRNA_4379 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670753
Unique Name	mRNA_4379
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2125
Alignment location	scaffold_10:441188..443385 -

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Properties


Property Name	Value
TranscriptId	670839
Track	FilteredModels2
ProteinId	670753

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:441188..443385 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670753	gene_4379	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670753	mRNA_4379-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4379	CDS_4379	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:441188..443385-
coding sequence from alignment at scaffold_10:441188..443385-

mRNA sequence

>mRNA_4379 ID=mRNA_4379|Name=jgi.p|Nanoce1779_2|670753|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp
CAACTTACACACACGTACACACAGCGACTAATTGAATCAGACGTGGCGGA
GGGCGGCCTCGTCTACGGGCGCCGGCAGGCAAGACTCATTTACCGCCGCA
TTTTGTTCGACACACACAGCAATCAGCAATGGCTGAAGGTGGCTTATTGT
ACTGGCGGCGGCAGCGTCATGACGGCACCAAGTACCAAGACTTCGACGAG
CTGATTCGACCTCTTCCCCCGCCTCCTCAGGGAATGATGTGGATCAAGAC
TCGCATAGTAATAGCGGAAACAAGTGAGGAGGAGGAGGAAGGGGCAGAGT
ACCAGAAGGGAGAGGAGGTCTCAGAAGGGGGACAGAACGAGAAAGAGATG
CAGCAAGACAGCGGCGGTCTTCCCACTGCCACGCTTGTAGAGGGAGAGGA
GGTAGATACTGCCGTTCCTCAAGTGCGGCCCCCGCGCTTCGTCACGCGAT
GGGAGCTTGTCGAACGTGCCTCGGTATCCAATGGCTGCGACGATTACGAG
GGTGGGGGAAGCGGGAAGAACTTACAAGGGGGCGACGAGGACTACGATGT
GTCAGAGGGCGGGGAAGACGGGGAGGGGAAGAGGCCGGCGTTTCTGACTC
ACGTAGTTTTGCCCACTGATACCATGCAAGGCTTACGTTTGCGTTATAAA
GTGACGCCGGCCGATCTGAGGCTGCACAATGATTTTGCTGGAGACCAGTT
CCACATGCTGCAGACTTTAAAGATCCCTTTGAGGCAGGAAGTTGTCAGCC
ACGTAGCCAAGTTCCGCCAGCGTCCAACGCAAGCCGTGCTCCGACAGCGC
TTCACCAACGTAACCAAATGCACGGATGAGCAGGAGGTTACTTATTACCT
TGACCTTGCCGAGTGGAACCTCTCTGGAGCTATCGCGGAATACAACGAGA
ATCGAGCATGGGAGGAAGCGCATCATGCGCGCGTGCAAATGGCGTGTCTC
CCTAATCCCTCACCTCTGCCCTTTTCGATTCAGGCAGCAACAGTGGCAGC
TGCAGCAGCTGCAGGAGGAGCACCTGCGGAAGCATCTGCAGAAGGAGGAA
CGGTCTCATGGGCCTTTTTGACCAATACCTTCCTCGCTAGCGGCAGTAGT
ACGTCCATGACGAGTCAGGAGAGCATCCCCCCCCCTTCTTATTCGTCTTT
CTTTCGTGTCCCACGTCGAGGCGCTCAGGAGAAGAAGAAGAAGAAGAAGT
GCGCGGAGAGTGGGGGGTATTTACTTTCTTGGTCGAAATTGGGTCGGAAG
AAACAGGCAAATAAAGCAGTCTATGATATGGCTACTTTCGTCGAAGAGGA
CTATGTCATCCTGCCTGGTGCCGAGATGGAGGGGGAGAAGGTGGATGAGT
TGGAAGACGTTGATGAGCAGGGATCCGTGGTAGAACCCGTAGCGTCTCTG
CTGCCGTCGTCGGCGGGGGGATTGAGAGGGGGAGGCGAACGTGTGGCTAT
TGTGACTGGGGAGGATGACCACCCGCAGACGCCCTTGTTGGCGCGGGCAG
CTGTGCGGGAGTAAATATTAATGATGTGTGCATGATATGTAAATGGATAC
GCTTGTATAGGAGAGGATGAGAAGAGGGGAGTTGTACTATGTGTGTGTGT
CTGTGTGTGTGTGTCTTTCGTGTGTGTTCGTCTGGGTGACTATGCGACAT
AGTGTCGGTTTTCTTCGGCATGCATTCTTTTGGAGAGTGCTTTTCAGAGA
CACAAGTCAAGTCAAGTCAAGTATGCGTGTGTGAGAAACATCACTAGACC
GCAACGTCGCGGTTGGCCATTATGCCCCCGTCATCCAAGTAGATTGGTTC
ACTTTCTATTGTCGCTCTTCTCGCACACAGCGCCATTGAGCATTCACTCT
GGCACTCAAAACAAGGGAAATAAATATCGACAAGTGTATCATCAAAGCGT
GTGACCTTCTTGTTTGACGCAATTTCGGGTTTTTGCTCTCCCTTCCCACC
TCAACTTCATTCAGCTGGTGCTTCTCAAATGCCGCAGGTCCTGCTTCTGC
CGTGTGATCAGCGTCTTCTTAACCCCACAACCCGCCCCCTGCCTAACGCC
ACTCGTAAAGAGATACATTATGTGCAAAATTGCTGATTAAATACTTTATG
TGCAAAATTGCTGATTATAATCTGT

protein sequence of jgi.p|Nanoce1779_2|670753

>mRNA_4379-protein ID=mRNA_4379-protein|Name=jgi.p|Nanoce1779_2|670753|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKTRIVIAETSE
EEEEGAEYQKGEEVSEGGQNEKEMQQDSGGLPTATLVEGEEVDTAVPQVR
PPRFVTRWELVERASVSNGCDDYEGGGSGKNLQGGDEDYDVSEGGEDGEG
KRPAFLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHMLQTLKIP
LRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTDEQEVTYYLDLAEWNLSG
AIAEYNENRAWEEAHHARVQMACLPNPSPLPFSIQAATVAAAAAAGGAPA
EASAEGGTVSWAFLTNTFLASGSSTSMTSQESIPPPSYSSFFRVPRRGAQ
EKKKKKKCAESGGYLLSWSKLGRKKQANKAVYDMATFVEEDYVILPGAEM
EGEKVDELEDVDEQGSVVEPVASLLPSSAGGLRGGGERVAIVTGEDDHPQ
TPLLARAAVRE*

mRNA from alignment at scaffold_10:441188..443385-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4379 ID=mRNA_4379|Name=jgi.p|Nanoce1779_2|670753|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp|location=Sequence derived from alignment at scaffold_10:441188..443385- (Nannochloropsis oceanica)
CAACTTACACACACGTACACACAGCGACTAATTGAATCAGACGTGGCGGA
GGGCGGCCTCGTCTACGGGCGCCGGCAGGCAAGACTCATTTACCGCCGCA
TTTTGTTCGACACACACAGCAATCAGCAATGGCTGAAGGTGGCTTATTGT
ACTGGCGGCGGCAGCGTCATGACGGCACCAAGTACCAAGACTTCGACGAG
CTGATTCGACCTCTTCCCCCGCCTCCTCAGGGAATGATGTGGATCAAGAC
TCGCATAGTAATAGCGGAAACAAGTGAGGAGGAGGAGGAAGGGGCAGAGT
ACCAGAAGGGAGAGGAGGTCTCAGAAGGGGGACAGAACGAGAAAGAGATG
CAGCAAGACAGCGGCGGTCTTCCCACTGCCACGCTTGTAGAGGGAGAGGA
GGTAGATACTGCCGTTCCTCAAGTGCGGCCCCCGCGCTTCGTCACGCGAT
GGGAGCTTGTCGAACGTGCCTCGGTATCCAATGGCTGCGACGATTACGAG
GGTGGGGGAAGCGGGAAGAACTTACAAGGGGGCGACGAGGACTACGATGT
GTCAGAGGGCGGGGAAGACGGGGAGGGGAAGAGGCCGGCGTTTCTGACTC
ACGTAGTTTTGCCCACTGATACCATGCAAGGCTTACGTTTGCGTTATAAA
GTGACGCCGGCCGATCTGAGGCTGCACAATGATTTTGCTGGAGACCAGTT
CCACATGCTGCAGACTTTAAAGGTACGACGAGTGCACATTCGCGTCTGTC
TTGCTCTCTCCCACTCACCCTCCTTCTCTCCCTCACTCCTCCCAGATCCC
TTTGAGGCAGGAAGTTGTCAGCCACGTAGCCAAGTTCCGCCAGCGTCCAA
CGCAAGCCGTGCTCCGACAGCGCTTCACCAACGTAACCAAATGCACGGAT
GAGCAGGAGGTTACTTATTACCTTGACCTTGCCGAGTGGAACCTCTCTGG
AGCTATCGCGGAATACAACGAGAATCGAGCATGGGAGGAAGCGCATCATG
CGCGCGTGCAAATGGCGTGTCTCCCTAATCCCTCACCTCTGCCCTTTTCG
ATTCAGGCAGCAACAGTGGCAGCTGCAGCAGCTGCAGGAGGAGCACCTGC
GGAAGCATCTGCAGAAGGAGGAACGGTCTCATGGGCCTTTTTGACCAATA
CCTTCCTCGCTAGCGGCAGTAGTACGTCCATGACGAGTCAGGAGAGCATC
CCCCCCCCTTCTTATTCGTCTTTCTTTCGTGTCCCACGTCGAGGCGCTCA
GGAGAAGAAGAAGAAGAAGAAGTGCGCGGAGAGTGGGGGGTATTTACTTT
CTTGGTCGAAATTGGGTCGGAAGAAACAGGCAAATAAAGCAGTCTATGAT
ATGGCTACTTTCGTCGAAGAGGACTATGTCATCCTGCCTGGTGCCGAGAT
GGAGGGGGAGAAGGTGGATGAGTTGGAAGACGTTGATGAGCAGGGATCCG
TGGTAGAACCCGTAGCGTCTCTGCTGCCGTCGTCGGCGGGGGGATTGAGA
GGGGGAGGCGAACGTGTGGCTATTGTGACTGGGGAGGATGACCACCCGCA
GACGCCCTTGTTGGCGCGGGCAGCTGTGCGGGAGTAAATATTAATGATGT
GTGCATGATATGTAAATGGATACGCTTGTATAGGAGAGGATGAGAAGAGG
GGAGTTGTACTATGTGTGTGTGTCTGTGTGTGTGTGTCTTTCGTGTGTGT
TCGTCTGGGTGACTATGCGACATAGTGTCGGTTTTCTTCGGCATGCATTC
TTTTGGAGAGTGCTTTTCAGAGACACAAGTCAAGTCAAGTCAAGTATGCG
TGTGTGAGAAACATCACTAGACCGCAACGTCGCGGTTGGCCATTATGCCC
CCGTCATCCAAGTAGATTGGTTCACTTTCTATTGTCGCTCTTCTCGCACA
CAGCGCCATTGAGCATTCACTCTGGCACTCAAAACAAGGGAAATAAATAT
CGACAAGTGTATCATCAAAGCGTGTGACCTTCTTGTTTGACGCAATTTCG
GGTTTTTGCTCTCCCTTCCCACCTCAACTTCATTCAGCTGGTGCTTCTCA
AATGCCGCAGGTCCTGCTTCTGCCGTGTGATCAGCGTCTTCTTAACCCCA
CAACCCGCCCCCTGCCTAACGCCACTCGTAAAGAGATACATTATGTGCAA
AATTGCTGATTAAATACTTTATGTGCAAAATTGCTGATTATAATCTGT

Coding sequence (CDS) from alignment at scaffold_10:441188..443385-

>mRNA_4379 ID=mRNA_4379|Name=jgi.p|Nanoce1779_2|670753|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_10:441188..443385- (Nannochloropsis oceanica)
ATCCCTTTGAGGCAGGAAGTTGTCAGCCACGTAGCCAAGTTCCGCCAGCG
TCCAACGCAAGCCGTGCTCCGACAGCGCTTCACCAACGTAACCAAATGCA
CGGATGAGCAGGAGGTTACTTATTACCTTGACCTTGCCGAGTGGAACCTC
TCTGGAGCTATCGCGGAATACAACGAGAATCGAGCATGGGAGGAAGCGCA
TCATGCGCGCGTGCAAATGGCGTGTCTCCCTAATCCCTCACCTCTGCCCT
TTTCGATTCAGGCAGCAACAGTGGCAGCTGCAGCAGCTGCAGGAGGAGCA
CCTGCGGAAGCATCTGCAGAAGGAGGAACGGTCTCATGGGCCTTTTTGAC
CAATACCTTCCTCGCTAGCGGCAGTAGTACGTCCATGACGAGTCAGGAGA
GCATCCCCCCCCCTTCTTATTCGTCTTTCTTTCGTGTCCCACGTCGAGGC
GCTCAGGAGAAGAAGAAGAAGAAGAAGTGCGCGGAGAGTGGGGGGTATTT
ACTTTCTTGGTCGAAATTGGGTCGGAAGAAACAGGCAAATAAAGCAGTCT
ATGATATGGCTACTTTCGTCGAAGAGGACTATGTCATCCTGCCTGGTGCC
GAGATGGAGGGGGAGAAGGTGGATGAGTTGGAAGACGTTGATGAGCAGGG
ATCCGTGGTAGAACCCGTAGCGTCTCTGCTGCCGTCGTCGGCGGGGGGAT
TGAGAGGGGGAGGCGAACGTGTGGCTATTGTGACTGGGGAGGATGACCAC
CCGCAGACGCCCTTGTTGGCGCGGGCAGCTGTGCGGGAGTAAATGGCTGA
AGGTGGCTTATTGTACTGGCGGCGGCAGCGTCATGACGGCACCAAGTACC
AAGACTTCGACGAGCTGATTCGACCTCTTCCCCCGCCTCCTCAGGGAATG
ATGTGGATCAAGACTCGCATAGTAATAGCGGAAACAAGTGAGGAGGAGGA
GGAAGGGGCAGAGTACCAGAAGGGAGAGGAGGTCTCAGAAGGGGGACAGA
ACGAGAAAGAGATGCAGCAAGACAGCGGCGGTCTTCCCACTGCCACGCTT
GTAGAGGGAGAGGAGGTAGATACTGCCGTTCCTCAAGTGCGGCCCCCGCG
CTTCGTCACGCGATGGGAGCTTGTCGAACGTGCCTCGGTATCCAATGGCT
GCGACGATTACGAGGGTGGGGGAAGCGGGAAGAACTTACAAGGGGGCGAC
GAGGACTACGATGTGTCAGAGGGCGGGGAAGACGGGGAGGGGAAGAGGCC
GGCGTTTCTGACTCACGTAGTTTTGCCCACTGATACCATGCAAGGCTTAC
GTTTGCGTTATAAAGTGACGCCGGCCGATCTGAGGCTGCACAATGATTTT
GCTGGAGACCAGTTCCACATGCTGCAGACTTTAAAGATCCCTTTGAGGCA
GGAAGTTGTCAGCCACGTAGCCAAGTTCCGCCAGCGTCCAACGCAAGCCG
TGCTCCGACAGCGCTTCACCAACGTAACCAAATGCACGGATGAGCAGGAG
GTTACTTATTACCTTGACCTTGCCGAGTGGAACCTCTCTGGAGCTATCGC
GGAATACAACGAGAATCGAGCATGGGAGGAAGCGCATCATGCGCGCGTGC
AAATGGCGTGTCTCCCTAATCCCTCACCTCTGCCCTTTTCGATTCAGGCA
GCAACAGTGGCAGCTGCAGCAGCTGCAGGAGGAGCACCTGCGGAAGCATC
TGCAGAAGGAGGAACGGTCTCATGGGCCTTTTTGACCAATACCTTCCTCG
CTAGCGGCAGTAGTACGTCCATGACGAGTCAGGAGAGCATCCCCCCCCCT
TCTTATTCGTCTTTCTTTCGTGTCCCACGTCGAGGCGCTCAGGAGAAGAA
GAAGAAGAAGAAGTGCGCGGAGAGTGGGGGGTATTTACTTTCTTGGTCGA
AATTGGGTCGGAAGAAACAGGCAAATAAAGCAGTCTATGATATGGCTACT
TTCGTCGAAGAGGACTATGTCATCCTGCCTGGTGCCGAGATGGAGGGGGA
GAAGGTGGATGAGTTGGAAGACGTTGATGAGCAGGGATCCGTGGTAGAAC
CCGTAGCGTCTCTGCTGCCGTCGTCGGCGGGGGGATTGAGAGGGGGAGGC
GAACGTGTGGCTATTGTGACTGGGGAGGATGACCACCCGCAGACGCCCTT
GTTGGCGCGGGCAGCTGTGCGGGAGTAAATGGCTGAAGGTGGCTTATTGT
ACTGGCGGCGGCAGCGTCATGACGGCACCAAGTACCAAGACTTCGACGAG
CTGATTCGACCTCTTCCCCCGCCTCCTCAGGGAATGATGTGGATCAAGAC
TCGCATAGTAATAGCGGAAACAAGTGAGGAGGAGGAGGAAGGGGCAGAGT
ACCAGAAGGGAGAGGAGGTCTCAGAAGGGGGACAGAACGAGAAAGAGATG
CAGCAAGACAGCGGCGGTCTTCCCACTGCCACGCTTGTAGAGGGAGAGGA
GGTAGATACTGCCGTTCCTCAAGTGCGGCCCCCGCGCTTCGTCACGCGAT
GGGAGCTTGTCGAACGTGCCTCGGTATCCAATGGCTGCGACGATTACGAG
GGTGGGGGAAGCGGGAAGAACTTACAAGGGGGCGACGAGGACTACGATGT
GTCAGAGGGCGGGGAAGACGGGGAGGGGAAGAGGCCGGCGTTTCTGACTC
ACGTAGTTTTGCCCACTGATACCATGCAAGGCTTACGTTTGCGTTATAAA
GTGACGCCGGCCGATCTGAGGCTGCACAATGATTTTGCTGGAGACCAGTT
CCACATGCTGCAGACTTTAAAG

Synonyms

Publications