jgi.p|Nanoce1779_2|588915, mRNA_4378 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588915
Unique Name	mRNA_4378
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3618
Alignment location	scaffold_10:436922..440539 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589001
Track	FilteredModels2
ProteinId	588915

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:436922..440539 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588915	gene_4378	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588915	mRNA_4378-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4378	CDS_4378	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:436922..440539-
coding sequence from alignment at scaffold_10:436922..440539-

mRNA sequence

>mRNA_4378 ID=mRNA_4378|Name=jgi.p|Nanoce1779_2|588915|organism=Nannochloropsis oceanica|type=mRNA|length=3618bp
ACAGGCGCAGCAAGACATCTACGACGCGCCTTTCCCCTCTGCCTTGCTGG
CAGTCCACCACCCCCTCCCTTGGACAACACTACCAGCATCCATGGTGCCC
TCACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGATAGTGCCAG
CAGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTGTACCCACCC
GGCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTCGGACGGATG
TTTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGCGAATTCCGA
CATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAGGGGTAGGTG
AGATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCGGCTGCGAAT
AACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGGGATTGCGTC
AATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTATTCCAGTTG
CGGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCCTTTATTGGC
TGGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGGGGCGGCGAC
TGTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGTCGGCGTGTG
GATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGCTGGGATGTG
CAGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTTGCCCGCTAT
GGCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGATCAAGGAGA
GCGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGTGTGATCATT
ATTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAATTGGTCGCC
ATTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTGTGAGCGGGA
TTTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGCTTCGATTCT
GTGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGATTTGCCGAT
TGGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACATCTTGGTTG
CGTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAGGGAGTGGCG
CACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAAGTGGTTGGT
GATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTGTGATTTTGG
TGAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCTGTGGATGGA
TTTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAAGACGCCGTG
GGTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTGCGGGAATCT
TGCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACGCTGTTTGCT
TTTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCGCAGGCCGAA
TCTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCATTCCAGGGT
TGGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACCCCGCAGACG
ATTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAATTTACTTTGT
GTGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGAGTCTCAATT
TGCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGGGAGGTGGTG
GGGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAAAGTGACGGC
GGATTCGTAGAGGAAAGAACCCAGGGGAAAGACTTAAGGGGCGGGGATCA
TAAGTAGGCTGGAAAAGGAGTAAGCGAACATAAATGATGTCTGATATAGA
TTTGAAGCACCAAAAACAAAAAGCAAAATGGTTGCCTCCTATAGAATGTA
CAGTCCTCTGGGGGTAAAGAACCTGTCAGAGGGAAGAAAAAGACGCATGC
GAACAGATAAAAATACCCAAAAAGGGATCGCAAAGAAGAAATGAGCCTGA
ACTTACTAAGTACCTATGGCACGAGGTTTGCTCTGGTTGGGAGAATGGGC
CGTGGTACCACCAGCAGTCTCGGTCCGAAGAGAGGGAGACTTGCTTCCCC
TCTGGAGGCCGTGTTCTCACGTGCCTGGTTTGCCCCTCCACAATCTTACC
ACCGCGTTATGGACTACTACCGACTGTGATTTTTCCCTCGGTTCCAGCCA
TCCCCCCTACCCAGGACCTGGGCTCTTGCTGCAATTTGGCACGGTTGCTT
GCCCTCCAATCCACTCTGCTTCAAGCCTCAACGCCTGCAACCCTCCTTTA
TAGTATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCAC
GGCCAACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCG
CTCCTTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCT
CGCATTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAAT
CCCACTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAG
TACTTCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCA
ACAACAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCT
CCTCCCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATAC
AACATATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAA
CAAGGGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCC
AACCCATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATA
AGCCCTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGA
CTTGAGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCT
CACGGGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTT
TGTGCAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGC
GCTACCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAG
TAGCGGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGT
CCTTTGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGC
AGCAGTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGA
AGTTGGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGG
GAGGCGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTT
ACCCTGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGA
CGGACGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAAT
CGGGTGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCA
CCTGCAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGG
TGTGTCGAGAAAGGAGGA

protein sequence of jgi.p|Nanoce1779_2|588915

>mRNA_4378-protein ID=mRNA_4378-protein|Name=jgi.p|Nanoce1779_2|588915|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MVPSPRKMASSVSSDSDSASSGASLHAGNKPSLVPTRRTISSSNEGKGYF
GRMFTTKSVDLLAEQGANSDMHRTLGAWDLTLLGVGEIVGTGIFVLTGTA
AANNAGPAVVISFVIAGIASMFAALCYSELASIIPVAGSAYTYSYATLGS
FIGWTIGWDLCLEYLVGAATVCVGWSAYLRSFLSACGYDMPSRWSRSPVG
WDVQKGEFHITGDYVDLPAMAIALLMTTILVFGIKESARFNSVIVMIKIG
VIIIFIIAMGPRVDRANWSPFVPPNEGRFGQYGVSGIFQGASVVFFSYIG
FDSVSCCAQECKKPERDLPIGTLSSLAVCTVLYILVALIATGLLPYYEFK
GVAHPISFAVEGIEGYKWLVMLINFGAIAGLTSVILVSLMSQPRIFYAMA
VDGFVPAFCGKIHPKYKTPWVTTIITGALCSLCAGILPIEVLSELTSVGT
LFAFVLVCVGVSVLRYRRPNLERKFKVPLGPWLIPGLGAASSFLLICTST
PQTIYRLFGWMAIGWIIYFVWGFQNSQKALERTSLNLPSRVIEPQGAEGG
EVVGKKEGSMGEGGVAKVTADS*

mRNA from alignment at scaffold_10:436922..440539-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4378 ID=mRNA_4378|Name=jgi.p|Nanoce1779_2|588915|organism=Nannochloropsis oceanica|type=mRNA|length=3618bp|location=Sequence derived from alignment at scaffold_10:436922..440539- (Nannochloropsis oceanica)
ACAGGCGCAGCAAGACATCTACGACGCGCCTTTCCCCTCTGCCTTGCTGG
CAGTCCACCACCCCCTCCCTTGGACAACACTACCAGCATCCATGGTGCCC
TCACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGATAGTGCCAG
CAGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTGTACCCACCC
GGCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTCGGACGGATG
TTTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGCGAATTCCGA
CATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAGGGGTAGGTG
AGATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCGGCTGCGAAT
AACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGGGATTGCGTC
AATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTATTCCAGTTG
CGGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCCTTTATTGGC
TGGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGGGGCGGCGAC
TGTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGTCGGCGTGTG
GATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGCTGGGATGTG
CAGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTTGCCCGCTAT
GGCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGATCAAGGAGA
GCGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGTGTGATCATT
ATTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAATTGGTCGCC
ATTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTGTGAGCGGGA
TTTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGCTTCGATTCT
GTGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGATTTGCCGAT
TGGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACATCTTGGTTG
CGTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAGGGAGTGGCG
CACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAAGTGGTTGGT
GATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTGTGATTTTGG
TGAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCTGTGGATGGA
TTTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAAGACGCCGTG
GGTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTGCGGGAATCT
TGCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACGCTGTTTGCT
TTTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCGCAGGCCGAA
TCTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCATTCCAGGGT
TGGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACCCCGCAGACG
ATTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAATTTACTTTGT
GTGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGAGTCTCAATT
TGCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGGGAGGTGGTG
GGGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAAAGTGACGGC
GGATTCGTAGAGGAAAGAACCCAGGGGAAAGACTTAAGGGGCGGGGATCA
TAAGTAGGCTGGAAAAGGAGTAAGCGAACATAAATGATGTCTGATATAGA
TTTGAAGCACCAAAAACAAAAAGCAAAATGGTTGCCTCCTATAGAATGTA
CAGTCCTCTGGGGGTAAAGAACCTGTCAGAGGGAAGAAAAAGACGCATGC
GAACAGATAAAAATACCCAAAAAGGGATCGCAAAGAAGAAATGAGCCTGA
ACTTACTAAGTACCTATGGCACGAGGTTTGCTCTGGTTGGGAGAATGGGC
CGTGGTACCACCAGCAGTCTCGGTCCGAAGAGAGGGAGACTTGCTTCCCC
TCTGGAGGCCGTGTTCTCACGTGCCTGGTTTGCCCCTCCACAATCTTACC
ACCGCGTTATGGACTACTACCGACTGTGATTTTTCCCTCGGTTCCAGCCA
TCCCCCCTACCCAGGACCTGGGCTCTTGCTGCAATTTGGCACGGTTGCTT
GCCCTCCAATCCACTCTGCTTCAAGCCTCAACGCCTGCAACCCTCCTTTA
TAGTATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCAC
GGCCAACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCG
CTCCTTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCT
CGCATTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAAT
CCCACTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAG
TACTTCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCA
ACAACAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCT
CCTCCCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATAC
AACATATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAA
CAAGGGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCC
AACCCATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATA
AGCCCTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGA
CTTGAGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCT
CACGGGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTT
TGTGCAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGC
GCTACCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAG
TAGCGGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGT
CCTTTGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGC
AGCAGTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGA
AGTTGGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGG
GAGGCGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTT
ACCCTGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGA
CGGACGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAAT
CGGGTGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCA
CCTGCAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGG
TGTGTCGAGAAAGGAGGA

Coding sequence (CDS) from alignment at scaffold_10:436922..440539-

>mRNA_4378 ID=mRNA_4378|Name=jgi.p|Nanoce1779_2|588915|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_10:436922..440539- (Nannochloropsis oceanica)
ATGGTGCCCTCACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGA
TAGTGCCAGCAGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTG
TACCCACCCGGCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTC
GGACGGATGTTTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGC
GAATTCCGACATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAG
GGGTAGGTGAGATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCG
GCTGCGAATAACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGG
GATTGCGTCAATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTA
TTCCAGTTGCGGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCC
TTTATTGGCTGGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGG
GGCGGCGACTGTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGT
CGGCGTGTGGATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGC
TGGGATGTGCAGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTT
GCCCGCTATGGCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGA
TCAAGGAGAGCGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGT
GTGATCATTATTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAA
TTGGTCGCCATTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTG
TGAGCGGGATTTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGC
TTCGATTCTGTGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGA
TTTGCCGATTGGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACA
TCTTGGTTGCGTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAG
GGAGTGGCGCACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAA
GTGGTTGGTGATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTG
TGATTTTGGTGAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCT
GTGGATGGATTTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAA
GACGCCGTGGGTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTG
CGGGAATCTTGCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACG
CTGTTTGCTTTTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCG
CAGGCCGAATCTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCA
TTCCAGGGTTGGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACC
CCGCAGACGATTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAAT
TTACTTTGTGTGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGA
GTCTCAATTTGCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGG
GAGGTGGTGGGGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAA
AGTGACGGCGGATTCGTAG

Synonyms

Publications