jgi.p|Nanoce1779_2|527873, mRNA_4377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527873
Unique NamemRNA_4377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1491
Alignment locationscaffold_10:436695..438185 -

Link to JBrowse

Properties
Property NameValue
TranscriptId527959
TrackFilteredModels2
ProteinId527873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:436695..438185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527873gene_4377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4377CDS_4377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527873mRNA_4377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4377 ID=mRNA_4377|Name=jgi.p|Nanoce1779_2|527873|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
ATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCC
AACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCC
TTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCA
TTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCA
CTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACT
TCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAA
CAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTC
CCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACA
TATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAG
GGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACC
CATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCC
CTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTG
AGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACG
GGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTG
CAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTA
CCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGC
GGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTT
TGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCA
GTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTT
GGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGG
CGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCC
TGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGA
CGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGG
TGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTG
CAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTG
TCGAGAAAGGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATG
AGAAGGAGGAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGG
TTGGTGGGGATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGA
GAGTGGGGGTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGG
GGGGAGGAGGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|527873

>mRNA_4377-protein ID=mRNA_4377-protein|Name=jgi.p|Nanoce1779_2|527873|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MSPPQCTSAPPHPAARPTRRRPRRSQPPRPCPLLSLLSLVTFIRLDPALA
FYLPTPFSSVVCSSQSHYPIITGKIIKPPSRKYFTPPKQQEAETPTKEQQ
QSFQSSSSSNPLALPSSQYNELMEALSDDEKYNILLQSRAATLVQALGNK
GKGPAGAAMTMPQTFQPIYKLIEEMTEKNVRISPKSFAALVDAASLSRDL
SVIQECMLLARRNGASRVFARGVGTLSPPPPLCASTVAGGGAAASEIDAL
PPVPHDERTSELGAGVAALTVLGGALMVEALGPLVHVDTWPATVVLVGAA
VAAGLDLTQRQGEEVKLVLAGLSRMFMRDPEREARVQAATFLSAYLLGLP
CFCFSPNVLEAVKMTTDVQEFAEMLSSPVGMNRVLVYMLAPVVVEEANHL
QLIASDPRQARALVQVCRERRRGREGGWEGEADEKEEERLLRWAYEEARR
LVGMNSGLLEKLRQRMESGGATVGDCVALLESGGGGGGGGGGRRSD*
back to top

mRNA from alignment at scaffold_10:436695..438185-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4377 ID=mRNA_4377|Name=jgi.p|Nanoce1779_2|527873|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_10:436695..438185- (Nannochloropsis oceanica)
ATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCC
AACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCC
TTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCA
TTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCA
CTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACT
TCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAA
CAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTC
CCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACA
TATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAG
GGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACC
CATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCC
CTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTG
AGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACG
GGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTG
CAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTA
CCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGC
GGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTT
TGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCA
GTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTT
GGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGG
CGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCC
TGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGA
CGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGG
TGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTG
CAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTG
TCGAGAAAGGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATG
AGAAGGAGGAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGG
TTGGTGGGGATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGA
GAGTGGGGGTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGG
GGGGAGGAGGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAG
back to top

Coding sequence (CDS) from alignment at scaffold_10:436695..438185-

>mRNA_4377 ID=mRNA_4377|Name=jgi.p|Nanoce1779_2|527873|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at scaffold_10:436695..438185- (Nannochloropsis oceanica)
ATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCC
AACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCC
TTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCA
TTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCA
CTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACT
TCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAA
CAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTC
CCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACA
TATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAG
GGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACC
CATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCC
CTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTG
AGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACG
GGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTG
CAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTA
CCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGC
GGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTT
TGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCA
GTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTT
GGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGG
CGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCC
TGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGA
CGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGG
TGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTG
CAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTG
TCGAGAAAGGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATG
AGAAGGAGGAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGG
TTGGTGGGGATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGA
GAGTGGGGGTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGG
GGGGAGGAGGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAG
back to top
Synonyms
Publications