jgi.p|Nanoce1779_2|22637, mRNA_4375 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|22637
Unique NamemRNA_4375
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length817
Alignment locationscaffold_10:431770..433245 -

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Properties
Property NameValue
TranscriptId22723
TrackFilteredModels2
ProteinId22637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:431770..433245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22637gene_4375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22637mRNA_4375-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4375CDS_4375Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4375 ID=mRNA_4375|Name=jgi.p|Nanoce1779_2|22637|organism=Nannochloropsis oceanica|type=mRNA|length=817bp
CATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCCACAGACACCCA
CACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGCAACATTGATAT
ACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGGCTAGAGCAGCA
GCAGGTGGGCGAGCACGAGGTTATTGTCAACTTCCGGCATATCTCCGAAC
TTGAGCACCATGGCATCAATCGTACCGACCTGAACAAGCTCATGGAGGCC
GGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCGCAAACTAAC
TGACATCAAGGGCATCTCCGACCAGAAGGCCCTCAAAATCAAAGAAGTCG
CCTACAAACTCGTTCCCATGGGATTCCTCACCGCTGCCCAACAGCTCGAA
ACCCGCAAGGACCTGATTCAGCTCTCGACGGGGTCCAAAGATTTGGATGC
TTTGCTGGGCGGAGGGATAGAAACAGGCAGCCTCACGGAGATTTTCGGGG
AATTCCGTACGGGCAAGACCCAACTCTGTCACACCCTCTGTGTGACGAGC
CAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGGAAGGCCATGTATATTGA
CACGGAGGGGACCTTCCGTCCCCAGCGGTTGGTGGCCATTGCCGAGCGTT
TCGGCCTGGACGTGGAAACCGTGTTGGACAATGTAGCTTTTGCGCGGGCC
CATAATTCGGAGCAGCAAATGGATTTATTGAAGATGGCGTCGGCCATGAT
GAGTGAAGACCGGTACGCCCTCTCGTGCTGACCAACCAAGTGGTGGCGAA
CCCGGACGGGATGAGTT
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protein sequence of jgi.p|Nanoce1779_2|22637

>mRNA_4375-protein ID=mRNA_4375-protein|Name=jgi.p|Nanoce1779_2|22637|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MAAAAAEMQHVGLEQQQVGEHEVIVNFRHISELEHHGINRTDLNKLMEAG
YCTVEAVTHATIRKLTDIKGISDQKALKIKEVAYKLVPMGFLTAAQQLET
RKDLIQLSTGSKDLDALLGGGIETGSLTEIFGEFRTGKTQLCHTLCVTSQ
LPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVETVLDNVAFARAH
NSEQQMDLLKMASAMMSEDRYALSC*
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mRNA from alignment at scaffold_10:431770..433245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4375 ID=mRNA_4375|Name=jgi.p|Nanoce1779_2|22637|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp|location=Sequence derived from alignment at scaffold_10:431770..433245- (Nannochloropsis oceanica)
CATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCCACAGACACCCA
CACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGCAACATTGATAT
ACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGGCTAGAGCAGCA
GCAGGTGGGCGAGCACGAGGTACGTGTGGTAATAAAGGTGAAGCGAGGGT
GAGAGGGGAAGAGGATCAATGGGCAGACGCCGCCGGCAGTGAGAGTTGGT
ATTTCCCTCGTCCTCCCCCTTTTCTTCTCAATTTATGCTTACTGGTTGAA
TCGTGCCTTAGTAGAGATGTCGCCGCCGCATCCCCCACCTCACCCATCCC
TCCCTCTCCTTCCCCTTGCCACCAGGTTATTGTCAACTTCCGGCATATCT
CCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGAACAAGCTCATG
GAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCGCAA
ACTAACTGACATCAAGGTAAGGTAGTAGAGTAGGGGAAGAGAAGGGGGAG
TCAGTCCTCTTCACGCTCATTCGTCCGTGCTTCTTCTGCTACTCATGTCA
GGCTAACTTTTTTTCCACACTGTCCTCCTCCTTCCCATTTCTTTTTCTCT
CTTTCTCACCCTACTTCTCCTTTTCCCCAGGGCATCTCCGACCAGAAGGC
CCTCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCA
CCGCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACG
GGGTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAG
CCTCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTC
ACACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAA
GGGAAGGCCATGTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTT
GGTGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACA
ATGTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTG
AAGATGGCGTCGGCCATGATGAGGTACGTCCGATGCCCTCCTCTCTTCCT
TCCTCCCTCCTTTGTCCCCCTTCCTCCGCTTCTGCGCTTTCTGTCGGGGA
GCCAACAAAAGGCAGGTGCAGTTCGCTCACTCCCTCTCTCCCTCCTTTCC
TCCCTCCCTCCTTCCTTCATTCCCCACAGTGAAGACCGGTACGCCCTCGT
GGTGGTCGACAGTGCCACTGCCCTATTCCGTACTGACTACTGCGGCCGCG
GGGAGCTGAGCGAGCGCCAGATGCAGCTAGCTCAATTTCTCCGTCAACTG
ACCCGGATGTCAGAGGAGTTCGGCGTGGCCGTCGTGCTGACCAACCAAGT
GGTGGCGAACCCGGACGGGATGAGTT
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Coding sequence (CDS) from alignment at scaffold_10:431770..433245-

>mRNA_4375 ID=mRNA_4375|Name=jgi.p|Nanoce1779_2|22637|organism=Nannochloropsis oceanica|type=CDS|length=3390bp|location=Sequence derived from alignment at scaffold_10:431770..433245- (Nannochloropsis oceanica)
TCGTGCTGATGAAGACCGGTACGCCCTCGGCATCTCCGACCAGAAGGCCC
TCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCACC
GCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACGGG
GTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCC
TCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTCAC
ACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGG
GAAGGCCATGTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTTGG
TGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACAAT
GTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTGAA
GATGGCGTCGGCCATGATGAGGTTATTGTCAACTTCCGGCATATCTCCGA
ACTTGAGCACCATGGCATCAATCGTACCGACCTGAACAAGCTCATGGAGG
CCGGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCGCAAACTA
ACTGACATCAAGATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGGCT
AGAGCAGCAGCAGGTGGGCGAGCACGAGTCGTGCTGATGAAGACCGGTAC
GCCCTCGGCATCTCCGACCAGAAGGCCCTCAAAATCAAAGAAGTCGCCTA
CAAACTCGTTCCCATGGGATTCCTCACCGCTGCCCAACAGCTCGAAACCC
GCAAGGACCTGATTCAGCTCTCGACGGGGTCCAAAGATTTGGATGCTTTG
CTGGGCGGAGGGATAGAAACAGGCAGCCTCACGGAGATTTTCGGGGAATT
CCGTACGGGCAAGACCCAACTCTGTCACACCCTCTGTGTGACGAGCCAGT
TGCCGCTGGACCAGGGAGGAGGAGAAGGGAAGGCCATGTATATTGACACG
GAGGGGACCTTCCGTCCCCAGCGGTTGGTGGCCATTGCCGAGCGTTTCGG
CCTGGACGTGGAAACCGTGTTGGACAATGTAGCTTTTGCGCGGGCCCATA
ATTCGGAGCAGCAAATGGATTTATTGAAGATGGCGTCGGCCATGATGAGG
TTATTGTCAACTTCCGGCATATCTCCGAACTTGAGCACCATGGCATCAAT
CGTACCGACCTGAACAAGCTCATGGAGGCCGGATATTGCACCGTCGAGGC
TGTCACACACGCCACCATCCGCAAACTAACTGACATCAAGATGGCGGCAG
CAGCAGCAGAGATGCAGCACGTGGGGCTAGAGCAGCAGCAGGTGGGCGAG
CACGAGTCGTGCTGATGAAGACCGGTACGCCCTCGGCATCTCCGACCAGA
AGGCCCTCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATGGGATTC
CTCACCGCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTC
GACGGGGTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAG
GCAGCCTCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACCCAACTC
TGTCACACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGG
AGAAGGGAAGGCCATGTATATTGACACGGAGGGGACCTTCCGTCCCCAGC
GGTTGGTGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTG
GACAATGTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAATGGATTT
ATTGAAGATGGCGTCGGCCATGATGAGGTTATTGTCAACTTCCGGCATAT
CTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGAACAAGCTCA
TGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCGC
AAACTAACTGACATCAAGATGGCGGCAGCAGCAGCAGAGATGCAGCACGT
GGGGCTAGAGCAGCAGCAGGTGGGCGAGCACGAGTCGTGCTGATGAAGAC
CGGTACGCCCTCGGCATCTCCGACCAGAAGGCCCTCAAAATCAAAGAAGT
CGCCTACAAACTCGTTCCCATGGGATTCCTCACCGCTGCCCAACAGCTCG
AAACCCGCAAGGACCTGATTCAGCTCTCGACGGGGTCCAAAGATTTGGAT
GCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCCTCACGGAGATTTTCGG
GGAATTCCGTACGGGCAAGACCCAACTCTGTCACACCCTCTGTGTGACGA
GCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGGAAGGCCATGTATATT
GACACGGAGGGGACCTTCCGTCCCCAGCGGTTGGTGGCCATTGCCGAGCG
TTTCGGCCTGGACGTGGAAACCGTGTTGGACAATGTAGCTTTTGCGCGGG
CCCATAATTCGGAGCAGCAAATGGATTTATTGAAGATGGCGTCGGCCATG
ATGAGGTTATTGTCAACTTCCGGCATATCTCCGAACTTGAGCACCATGGC
ATCAATCGTACCGACCTGAACAAGCTCATGGAGGCCGGATATTGCACCGT
CGAGGCTGTCACACACGCCACCATCCGCAAACTAACTGACATCAAGATGG
CGGCAGCAGCAGCAGAGATGCAGCACGTGGGGCTAGAGCAGCAGCAGGTG
GGCGAGCACGAGTCGTGCTGATGAAGACCGGTACGCCCTCGGCATCTCCG
ACCAGAAGGCCCTCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATG
GGATTCCTCACCGCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCA
GCTCTCGACGGGGTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAG
AAACAGGCAGCCTCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACC
CAACTCTGTCACACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGG
AGGAGGAGAAGGGAAGGCCATGTATATTGACACGGAGGGGACCTTCCGTC
CCCAGCGGTTGGTGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACC
GTGTTGGACAATGTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAAT
GGATTTATTGAAGATGGCGTCGGCCATGATGAGGTTATTGTCAACTTCCG
GCATATCTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGAACA
AGCTCATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCCACC
ATCCGCAAACTAACTGACATCAAGATGGCGGCAGCAGCAGCAGAGATGCA
GCACGTGGGGCTAGAGCAGCAGCAGGTGGGCGAGCACGAG
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Synonyms
Publications