jgi.p|Nanoce1779_2|588905, mRNA_4374 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588905
Unique Name	mRNA_4374
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2340
Alignment location	scaffold_10:428518..430857 -

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Properties


Property Name	Value
TranscriptId	588991
Track	FilteredModels2
ProteinId	588905

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:428518..430857 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588905	gene_4374	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588905	mRNA_4374-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4374	CDS_4374	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:428518..430857-
coding sequence from alignment at scaffold_10:428518..430857-

mRNA sequence

>mRNA_4374 ID=mRNA_4374|Name=jgi.p|Nanoce1779_2|588905|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp
ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT
TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC
GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC
GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG
ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC
ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC
CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG
TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC
GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG
TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA
CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG
GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC
CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC
GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC
GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT
GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA
TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC
GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG
AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC
CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT
CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC
AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG
CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC
GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG
GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG
CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA
GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG
CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC
CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA
CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC
CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC
ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA
ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA
AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG
GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT
TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC
CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG
GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT
GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA
AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT
TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC
AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC
TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG
GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA
GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC
GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA
GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAG

protein sequence of jgi.p|Nanoce1779_2|588905

>mRNA_4374-protein ID=mRNA_4374-protein|Name=jgi.p|Nanoce1779_2|588905|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MASTATMSPDALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQ
ESIPTPSMLHSSTSDEPLASATTLQKKHQFPQRALSKVLRRKLLVDVDTL
RAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALL
HFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQ
TFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDA
PAVYDKQGEKTGEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFL
ATAFLAPFRASHPQALLALYTALECEELLPADLLAAGAAADGPNKGPLDD
ILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTR
QSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQAL
TDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQYHHHHQHQHRQEQEQ
EQQQMHPQTGNQRATAMALKQTRSAEPEAATTKGAARGVLSSTATTYRSF
SSSSSSFASSSSTSSSIIKRAPVGGLEKKRCRQGQNHGNGKSGEWRTDKK
ESLDGRGTKRRQGGGGKGYVEVSEGGGRRESSSVVQKFTPTVCSGRPNFS
SSSSSDKNDSTSSRMGSVDATILGTPPPSLRKKRPGGGVRGDGRGGGAVV
AGTPEAVGRNVRAKRTTVAESPQG*

mRNA from alignment at scaffold_10:428518..430857-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4374 ID=mRNA_4374|Name=jgi.p|Nanoce1779_2|588905|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at scaffold_10:428518..430857- (Nannochloropsis oceanica)
ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT
TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC
GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC
GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG
ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC
ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC
CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG
TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC
GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG
TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA
CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG
GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC
CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC
GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC
GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT
GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA
TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC
GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG
AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC
CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT
CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC
AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG
CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC
GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG
GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG
CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA
GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG
CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC
CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA
CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC
CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC
ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA
ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA
AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG
GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT
TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC
CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG
GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT
GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA
AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT
TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC
AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC
TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG
GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA
GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC
GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA
GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAG

Coding sequence (CDS) from alignment at scaffold_10:428518..430857-

>mRNA_4374 ID=mRNA_4374|Name=jgi.p|Nanoce1779_2|588905|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_10:428518..430857- (Nannochloropsis oceanica)
ATGGCGTCTACCGCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCG
AGCGCTCACGGCGCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATG
CCATCACGAAGGATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAG
GAGAGCATTCCCACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCC
TCTGGCTTCCGCCACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAG
CCCTAAGCAAGGTACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTG
CGAGCAGCCTACGCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGG
CGTCCCCTTCAGTGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTC
TCTCATCACATACAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTA
CATTTTTCGTTGGGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTC
CTCCTCCTCGCCCTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCT
CCTTGCTTAGACGCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAA
ACCTTCTCACTCGGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGA
TGGTTCCTTATTGCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCA
GCGGGAGCAGCATGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCT
CCAGCTGTCTACGACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGG
CCGGGAGGGGGGAAACGAGAACGACACAGAAGCCACCACACTGGGTCGGC
ATTCGTCACATCCCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTG
GCAACGGCTTTTCTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCT
TGCCCTGTACACAGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTAT
TGGCAGCAGGAGCAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGAC
ATACTGCTGCTCGAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCC
CGTTTTCCGTCGGCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCA
TCTCCGCCTACGCCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGT
CAATCTGCGGGAGAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCG
GAAACCCACCGGCGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCC
AGCTTCCCATCCCCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTC
ACAGACAGTCAACGGGCCCATCCCAGTCATTACATGACACGTATCAATAG
CTTCCGGAAACCCACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCC
AGCAGTACCACCACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAA
GAGCAGCAGCAAATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCAT
GGCTTTGAAACAAACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAG
GAGCAGCAAGAGGGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTC
TCCTCCTCCTCTTCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGAT
CATTAAACGGGCCCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAG
GTCAGAATCATGGCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAG
GAAAGCCTCGATGGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAA
AGGATATGTAGAAGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTG
TAGTTCAGAAATTCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGC
AGCAGCAGCAGCAGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATC
GGTAGATGCGACTATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAAC
GACCGGGAGGAGGTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTT
GCAGGAACACCAGAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGAC
TGTTGCGGAGTCGCCTCAAGGCTAG

Synonyms

Publications