jgi.p|Nanoce1779_2|22608, mRNA_4371 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|22608
Unique NamemRNA_4371
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_10:424841..425881 +

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Properties
Property NameValue
TranscriptId22694
TrackFilteredModels2
ProteinId22608
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:424841..425881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22608gene_4371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22608mRNA_4371-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4371CDS_4371Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4371 ID=mRNA_4371|Name=jgi.p|Nanoce1779_2|22608|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
CAGGGACAGAGAATTGAAGGCGCGAAGCCCCGCATTCGCCGCGTCCGCTC
CCGTTATGTACGTACTAACTTACACACACTCACAAGTTCCGCATCAACAA
CTATACCAATAGAACCATCGTTATGGGGCGGAGGATGCTGGAGATTCCTC
CTGTTACTGCGACCGGGGACTTTCCACACCAATACAGCACGATCGTAGTC
CGCCCTACTGCCCGACCCCACGATGCCGACGCCCAAGAAGACGACAACGA
TGTTTTTTTGGGTTATTTTGACACGGAATTTGCCGTGCATGAGGCCCTGC
GACACATTACCAGCACGCCTGCAGCATCATTGGAGCCAGCGGCCGCGGAT
GGTCCCTCCTTCCCCCTATCACCCCTGCCTTCTCTTTCCACGTTGTCCAT
CGCAAGGAGCGGTACCATTCGTTGCAGTGCCGGGCGTACTTTTAGGCAAC
TTAAAAGTCGGCTCATTGCCAAGCACATGGCCAGGGAATCAGGCGTCGCG
GTCGCGGACAAGTTCTGCTGGTTCATCCTTGACGCCGGATGGTACCGGAC
TTGGTCGAGTTACGTTCTCGGCGCCGCCGCGTCCCCCCCTCCACCCCTCC
CCTCCAGTACCACCCTTCGGGACCCTGCGAGTCCGTCAAGGCCTGGTGGC
TGACGTGGACTACATTGCCATCTTTCCCACGATATGGTTTATTTTCTGCT
TGCTCTACGGCACGGTTGATTTAGAGGGCAGGGATGATAAGAGGGGAAGA
AATCATCAACAACCATGGCATCGAGCTATGTGATTATTTGCCGCTTTCAT
ACAAATGTAAACGGTGCTGAAGTCCCACCGTCTGCAGTCAGGGAAATCTC
TTGACGAGTTCATTAGAAATCGCATATGGCGTTGGACCGTTTGATGCGGC
GTCAGCACCAGCCATTGCTTCGCATGG
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protein sequence of jgi.p|Nanoce1779_2|22608

>mRNA_4371-protein ID=mRNA_4371-protein|Name=jgi.p|Nanoce1779_2|22608|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MPTPKKTTTMFFWVILTRNLPCMRPCDTLPARLQHHWSQRPRMVPPSPYH
PCLLFPRCPSQGAVPFVAVPGVLLGNLKVGSLPSTWPGNQASRSRTSSAG
SSLTPDGTGLGRVTFSAPPRPPLHPSPPVPPFGTLRVRQGLVADVDYIAI
FPTIWFIFCLLYGTVDLEGRDDKRGRNHQQPWHRAM*
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mRNA from alignment at scaffold_10:424841..425881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4371 ID=mRNA_4371|Name=jgi.p|Nanoce1779_2|22608|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at scaffold_10:424841..425881+ (Nannochloropsis oceanica)
CAGGGACAGAGAATTGAAGGCGCGAAGCCCCGCATTCGCCGCGTCCGCTC
CCGTTATGTACGTACTAACTTACACACACTCACAAGTTCCGCATCAACAA
CTATACCAATAGAACCATCGTTATGGGGCGGAGGATGCTGGAGATTCCTC
CTGTTACTGCGACCGGGGACTTTCCACACCAATACAGCACGATCGTAGTC
CGCCCTACTGCCCGACCCCACGATGCCGACGCCCAAGAAGACGACAACGA
TGTTTTTTTGGGTTATTTTGACACGGAATTTGCCGTGCATGAGGCCCTGC
GACACATTACCAGCACGCCTGCAGCATCATTGGAGCCAGCGGCCGCGGAT
GGTCCCTCCTTCCCCCTATCACCCCTGCCTTCTCTTTCCACGTTGTCCAT
CGCAAGGAGCGGTACCATTCGTTGCAGTGCCGGGCGTACTTTTAGGCAAC
TTAAAAGTCGGCTCATTGCCAAGCACATGGCCAGGGAATCAGGCGTCGCG
GTCGCGGACAAGTTCTGCTGGTTCATCCTTGACGCCGGATGGTACCGGAC
TTGGTCGAGGTAAGACAGTGTGCATGTTTGGAGACGTCGAGCCTCTCGTC
CATCGCTGTCGCACTCGTTGCATCATTTGTACTAGCGTTCCTTTATGCCT
GCCTTCCTCCCTTACCTACACAGTTACGTTCTCGGCGCCGCCGCGTCCCC
CCCTCCACCCCTCCCCTCCAGTACCACCCTTCGGGACCCTGCGAGTCCGT
CAAGGCCTGGTGGCTGACGTGGACTACATTGCCATCTTTCCCACGATATG
GTTTATTTTCTGCTTGCTCTACGGCACGGTTGATTTAGAGGGCAGGGATG
ATAAGAGGGGAAGAAATCATCAACAACCATGGCATCGAGCTATGTGATTA
TTTGCCGCTTTCATACAAATGTAAACGGTGCTGAAGTCCCACCGTCTGCA
GTCAGGGAAATCTCTTGACGAGTTCATTAGAAATCGCATATGGCGTTGGA
CCGTTTGATGCGGCGTCAGCACCAGCCATTGCTTCGCATGG
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Coding sequence (CDS) from alignment at scaffold_10:424841..425881+

>mRNA_4371 ID=mRNA_4371|Name=jgi.p|Nanoce1779_2|22608|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_10:424841..425881+ (Nannochloropsis oceanica)
ATGCCGACGCCCAAGAAGACGACAACGATGTTTTTTTGGGTTATTTTGAC
ACGGAATTTGCCGTGCATGAGGCCCTGCGACACATTACCAGCACGCCTGC
AGCATCATTGGAGCCAGCGGCCGCGGATGGTCCCTCCTTCCCCCTATCAC
CCCTGCCTTCTCTTTCCACGTTGTCCATCGCAAGGAGCGGTACCATTCGT
TGCAGTGCCGGGCGTACTTTTAGGCAACTTAAAAGTCGGCTCATTGCCAA
GCACATGGCCAGGGAATCAGGCGTCGCGGTCGCGGACAAGTTCTGCTGGT
TCATCCTTGACGCCGGATGGTACCGGACTTGGTCGAGTTACGTTCTCGGC
GCCGCCGCGTCCCCCCCTCCACCCCTCCCCTCCAGTACCACCCTTCGGGA
CCCTGCGAGTCCGTCAAGGCCTGGTGGCTGACGTGGACTACATTGCCATC
TTTCCCACGATATGGTTTATTTTCTGCTTGCTCTACGGCACGGTTGATTT
AGAGGGCAGGGATGATAAGAGGGGAAGAAATCATCAACAACCATGGCATC
GAGCTATGTGAATGCCGACGCCCAAGAAGACGACAACGATGTTTTTTTGG
GTTATTTTGACACGGAATTTGCCGTGCATGAGGCCCTGCGACACATTACC
AGCACGCCTGCAGCATCATTGGAGCCAGCGGCCGCGGATGGTCCCTCCTT
CCCCCTATCACCCCTGCCTTCTCTTTCCACGTTGTCCATCGCAAGGAGCG
GTACCATTCGTTGCAGTGCCGGGCGTACTTTTAGGCAACTTAAAAGTCGG
CTCATTGCCAAGCACATGGCCAGGGAATCAGGCGTCGCGGTCGCGGACAA
GTTCTGCTGGTTCATCCTTGACGCCGGATGGTACCGGACTTGGTCGAGTT
ACGTTCTCGGCGCCGCCGCGTCCCCCCCTCCACCCCTCCCCTCCAGTACC
ACCCTTCGGGACCCTGCGAGTCCGTCAAGGCCTGGTGGCTGACGTGGACT
ACATTGCCATCTTTCCCACGATATGGTTTATTTTCTGCTTGCTCTACGGC
ACGGTTGATTTAGAGGGCAGGGATGATAAGAGGGGAAGAAATCATCAACA
ACCATGGCATCGAGCTATGTGA
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Synonyms
Publications