jgi.p|Nanoce1779_2|588898, mRNA_4370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588898
Unique NamemRNA_4370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length775
Alignment locationscaffold_10:423557..424331 -

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Properties
Property NameValue
TranscriptId588984
TrackFilteredModels2
ProteinId588898
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:423557..424331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588898gene_4370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588898mRNA_4370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4370CDS_4370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Nanoce1779_2|588898|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
ACATCAGACAGCTTTTGTCCAGTACAATCCCAGACACCAAAAACATCATG
TCCCGCTCTGTTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTGCGG
CCTCGTCGCTGCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCGCCA
GCACCGCTCGGCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACCTTC
TCCTCAAGACAGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCCCCC
TTCCCGCCCTACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCAACC
TGGAAAAGAAGGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTTATT
GCTGTGGTGAGCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCTGGG
CGGTGGGTTTTTGACCCGATAGGCAATCATCGAAAGGTATCAGAGAATGA
GGAAGAGAACAGCAGCAGCGAGGGGGGGGGGGTGAAAACGAGGACAAAGG
AGAACGAACTAAGCCACCATATAAAGGATGAGGACCGTGCGTGAATCATT
GTTAAACTTGCAGCAAACAGCAAAGCTGAAGCCAAGAGGAGTGCCCGCGC
AGAGCACATCCGAAGTGGCAGGGTAGAGGCGCGAGGTGGAAAGATAAGAA
TAGGATGAGGAGGTGCTCACTCGGTAGCAGTGAGAGAGATGGATGGCCTC
ACAAACTTTTTTGTACAAGCGGAGAGAGTTCTCTTTTAATTTTAAAAAAA
AAAAACTGAAAGATGATTTAACAAA
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protein sequence of jgi.p|Nanoce1779_2|588898

>mRNA_4370-protein ID=mRNA_4370-protein|Name=jgi.p|Nanoce1779_2|588898|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSRSVAFLCAMALASLCGLVAAFRPAGFLPAISASTARPVSVTRYLSPST
FSSRQSRSSRSRLFEGPPSRPTRENEPDEYFKSNLEKKDLAERLVDPQVV
IAVVSILAPFVAVGVLLGGGFLTR*
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mRNA from alignment at scaffold_10:423557..424331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Nanoce1779_2|588898|organism=Nannochloropsis oceanica|type=mRNA|length=775bp|location=Sequence derived from alignment at scaffold_10:423557..424331- (Nannochloropsis oceanica)
ACATCAGACAGCTTTTGTCCAGTACAATCCCAGACACCAAAAACATCATG
TCCCGCTCTGTTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTGCGG
CCTCGTCGCTGCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCGCCA
GCACCGCTCGGCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACCTTC
TCCTCAAGACAGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCCCCC
TTCCCGCCCTACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCAACC
TGGAAAAGAAGGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTTATT
GCTGTGGTGAGCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCTGGG
CGGTGGGTTTTTGACCCGATAGGCAATCATCGAAAGGTATCAGAGAATGA
GGAAGAGAACAGCAGCAGCGAGGGGGGGGGGGTGAAAACGAGGACAAAGG
AGAACGAACTAAGCCACCATATAAAGGATGAGGACCGTGCGTGAATCATT
GTTAAACTTGCAGCAAACAGCAAAGCTGAAGCCAAGAGGAGTGCCCGCGC
AGAGCACATCCGAAGTGGCAGGGTAGAGGCGCGAGGTGGAAAGATAAGAA
TAGGATGAGGAGGTGCTCACTCGGTAGCAGTGAGAGAGATGGATGGCCTC
ACAAACTTTTTTGTACAAGCGGAGAGAGTTCTCTTTTAATTTTAAAAAAA
AAAAACTGAAAGATGATTTAACAAA
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Coding sequence (CDS) from alignment at scaffold_10:423557..424331-

>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Nanoce1779_2|588898|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_10:423557..424331- (Nannochloropsis oceanica)
ATGTCCCGCTCTGTTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTG
CGGCCTCGTCGCTGCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCG
CCAGCACCGCTCGGCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACC
TTCTCCTCAAGACAGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCC
CCCTTCCCGCCCTACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCA
ACCTGGAAAAGAAGGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTT
ATTGCTGTGGTGAGCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCT
GGGCGGTGGGTTTTTGACCCGATAG
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Synonyms
Publications