jgi.p|Nanoce1779_2|577322, mRNA_437 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577322
Unique Name	mRNA_437
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1933
Alignment location	scaffold_3:1077965..1079897 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577408
Track	FilteredModels2
ProteinId	577322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1077965..1079897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577322	gene_437	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577322	mRNA_437-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_437	CDS_437	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1077965..1079897+
coding sequence from alignment at scaffold_3:1077965..1079897+

mRNA sequence

>mRNA_437 ID=mRNA_437|Name=jgi.p|Nanoce1779_2|577322|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
ACAGCAAGCTACATCCCGTAGCCACTGACAAAAGCCATGACAACGCCTTC
TGAAGGCCCTGAAGATACTCCCGCCGATGAATCTGCAGTGCCGCCCCCCG
ACTCTCCAAGCCGCAAGCGCGCGCGCGTCGAGGCTGCGCCCGACACCATT
ACAAATACCACCACTACACCGACCTCAAAAACAGCGCTCCGCGAGACCTT
GCTGGACCCAACCCATGTCACGGCGTTGCGCCAGGCGTATCTACAAGCCT
TGGGCTATCCCCACTGCGTCGTGCAAGACGTCCTGGACCCTTCTTTTTTC
CGAGATCTCCGGGAGGAAATGGTGGGCTCGCTCTCGGCTACATTCAAGGA
GACGGACCTCTACAAGCTCTACCAGACAGGAGACCTGGCCAATTTGGACA
TCAACGATCCGGACATTACTGATCGATTGTCAAATTTATTAGCCTTGCGC
CAAGCCATCTACTCACAGACGTTCCGGGCATTCGTAAGGAAGATTACGGG
CTGTCAACCCTTGACGGACCGCACGGACTGCTCCTCCAATTTGTACGCTC
AAGGCTGTCACTTGCTTTGCCATGATGACGTGATTGGCACACGCTGTATT
GCTTACATCATATACCTGACCGACCCGGAGGAGACCTGGGAAGAGATGGA
TGGAGGCGCATTGGAGATCTACCCTCCCTCGGAGCCAGGCAAACTCGGCG
TCCCCGCCGTGGCTCCCGTTAAGAGTTACCTGCCCCTGCCCAACACCATG
GCCTTTTTCGCCGTCCTCCCCGGACAGAGTTTCCACGCTGTGGAAGAGGT
GTATAAGGACGGAAAGATGCGTTTGAGTGTCTCGGGGTGGTATCACGCTG
CTGCCACTCCCTCAGGAGTCCCAGACCTTGCCTCATTGAATCAACCGCAG
GCTCGAAGAGACGACGACTCCACGGTTTTCTCCACCCTACCACAACTACC
ATCCCTTTCTATTGCGACTGACTCCTCGCTCGCCAAGTGGGTAAATCCGA
CGTATTTGAAGCCAGGGGCCATGGAGCAAATATTGACTCGTTTTCAAGAA
GATGGCAGTATCTTACTGCATGGATTTTTGCTGCCTGAGGTGGCTCAACG
TGCAGCGACGTTGTTTCGACGGCAAGACGAGATCGATGGAGTGGGACACG
GCATCAAAGCTGCACATGGTGTGGGGTTTGTCAAGGGGACTTGGGTGCCA
GTGGGGCCACCGCACAAACAACGGTACATGCGTTTGGTGGCTGGACCTGC
TGCGACGGAGGAGAAAGAGGACAGTGCAGAGAAGGACAGCAACAACAGCC
ACATTTCTATTGCAGAAGTTGCTTTGTTTCTGACGACGTTGCGTGATGAG
CTTTTTGGATCGGCTGTTTTTGCCCTCTACCTTGCCCGATTGACCGGCGT
TGAGCCCTCGACCGTTAATACCGAGGCCCGTCGTTTTCGCCCCGGGTTGG
ACTACACGCTCGCCCACTACGGAATCGTGACCAAAGACCATCGCCTGGAT
GCGACCTTGTCATTTGTGGATGATGAGAAGAAGGGAAGGAAAGCTGCTTG
GGGTTCCGGGGACGTTGGGGGGTTTGAGTGTTACATCAAGGCGGAGGAGG
GAAATGATGGCGTGGAGGCTGCTGAGAGCTACAGGAGGCAGGCACAAGGC
AAAGAGGAGGAGGAAGAAGATGTCTTGACTGTGTTTGCCGCGCACAATGC
GTTGAGTTTGGTGTTACGGCAGACGCGTGCGATGCGGTTTGTGAAATATG
TGAGTGCGACAGCGCCTGGGAGCAGGTGGGATGTGATAAGTGAGTATTCT
CTAAGGCAAGGGGGGAAGGAGGAGGGAAAATATGGAGGGGTGGAGTGGAA
GAATGTTGCATAAAGCAATGCAGCGAAACACGGGAGCGGGCCAATAATGA
AAGAAATGACGAGTATCGCGGAGCACAGCTAAG

protein sequence of jgi.p|Nanoce1779_2|577322

>mRNA_437-protein ID=mRNA_437-protein|Name=jgi.p|Nanoce1779_2|577322|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MTTPSEGPEDTPADESAVPPPDSPSRKRARVEAAPDTITNTTTTPTSKTA
LRETLLDPTHVTALRQAYLQALGYPHCVVQDVLDPSFFRDLREEMVGSLS
ATFKETDLYKLYQTGDLANLDINDPDITDRLSNLLALRQAIYSQTFRAFV
RKITGCQPLTDRTDCSSNLYAQGCHLLCHDDVIGTRCIAYIIYLTDPEET
WEEMDGGALEIYPPSEPGKLGVPAVAPVKSYLPLPNTMAFFAVLPGQSFH
AVEEVYKDGKMRLSVSGWYHAAATPSGVPDLASLNQPQARRDDDSTVFST
LPQLPSLSIATDSSLAKWVNPTYLKPGAMEQILTRFQEDGSILLHGFLLP
EVAQRAATLFRRQDEIDGVGHGIKAAHGVGFVKGTWVPVGPPHKQRYMRL
VAGPAATEEKEDSAEKDSNNSHISIAEVALFLTTLRDELFGSAVFALYLA
RLTGVEPSTVNTEARRFRPGLDYTLAHYGIVTKDHRLDATLSFVDDEKKG
RKAAWGSGDVGGFECYIKAEEGNDGVEAAESYRRQAQGKEEEEEDVLTVF
AAHNALSLVLRQTRAMRFVKYVSATAPGSRWDVISEYSLRQGGKEEGKYG
GVEWKNVA*

mRNA from alignment at scaffold_3:1077965..1079897+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_437 ID=mRNA_437|Name=jgi.p|Nanoce1779_2|577322|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at scaffold_3:1077965..1079897+ (Nannochloropsis oceanica)
ACAGCAAGCTACATCCCGTAGCCACTGACAAAAGCCATGACAACGCCTTC
TGAAGGCCCTGAAGATACTCCCGCCGATGAATCTGCAGTGCCGCCCCCCG
ACTCTCCAAGCCGCAAGCGCGCGCGCGTCGAGGCTGCGCCCGACACCATT
ACAAATACCACCACTACACCGACCTCAAAAACAGCGCTCCGCGAGACCTT
GCTGGACCCAACCCATGTCACGGCGTTGCGCCAGGCGTATCTACAAGCCT
TGGGCTATCCCCACTGCGTCGTGCAAGACGTCCTGGACCCTTCTTTTTTC
CGAGATCTCCGGGAGGAAATGGTGGGCTCGCTCTCGGCTACATTCAAGGA
GACGGACCTCTACAAGCTCTACCAGACAGGAGACCTGGCCAATTTGGACA
TCAACGATCCGGACATTACTGATCGATTGTCAAATTTATTAGCCTTGCGC
CAAGCCATCTACTCACAGACGTTCCGGGCATTCGTAAGGAAGATTACGGG
CTGTCAACCCTTGACGGACCGCACGGACTGCTCCTCCAATTTGTACGCTC
AAGGCTGTCACTTGCTTTGCCATGATGACGTGATTGGCACACGCTGTATT
GCTTACATCATATACCTGACCGACCCGGAGGAGACCTGGGAAGAGATGGA
TGGAGGCGCATTGGAGATCTACCCTCCCTCGGAGCCAGGCAAACTCGGCG
TCCCCGCCGTGGCTCCCGTTAAGAGTTACCTGCCCCTGCCCAACACCATG
GCCTTTTTCGCCGTCCTCCCCGGACAGAGTTTCCACGCTGTGGAAGAGGT
GTATAAGGACGGAAAGATGCGTTTGAGTGTCTCGGGGTGGTATCACGCTG
CTGCCACTCCCTCAGGAGTCCCAGACCTTGCCTCATTGAATCAACCGCAG
GCTCGAAGAGACGACGACTCCACGGTTTTCTCCACCCTACCACAACTACC
ATCCCTTTCTATTGCGACTGACTCCTCGCTCGCCAAGTGGGTAAATCCGA
CGTATTTGAAGCCAGGGGCCATGGAGCAAATATTGACTCGTTTTCAAGAA
GATGGCAGTATCTTACTGCATGGATTTTTGCTGCCTGAGGTGGCTCAACG
TGCAGCGACGTTGTTTCGACGGCAAGACGAGATCGATGGAGTGGGACACG
GCATCAAAGCTGCACATGGTGTGGGGTTTGTCAAGGGGACTTGGGTGCCA
GTGGGGCCACCGCACAAACAACGGTACATGCGTTTGGTGGCTGGACCTGC
TGCGACGGAGGAGAAAGAGGACAGTGCAGAGAAGGACAGCAACAACAGCC
ACATTTCTATTGCAGAAGTTGCTTTGTTTCTGACGACGTTGCGTGATGAG
CTTTTTGGATCGGCTGTTTTTGCCCTCTACCTTGCCCGATTGACCGGCGT
TGAGCCCTCGACCGTTAATACCGAGGCCCGTCGTTTTCGCCCCGGGTTGG
ACTACACGCTCGCCCACTACGGAATCGTGACCAAAGACCATCGCCTGGAT
GCGACCTTGTCATTTGTGGATGATGAGAAGAAGGGAAGGAAAGCTGCTTG
GGGTTCCGGGGACGTTGGGGGGTTTGAGTGTTACATCAAGGCGGAGGAGG
GAAATGATGGCGTGGAGGCTGCTGAGAGCTACAGGAGGCAGGCACAAGGC
AAAGAGGAGGAGGAAGAAGATGTCTTGACTGTGTTTGCCGCGCACAATGC
GTTGAGTTTGGTGTTACGGCAGACGCGTGCGATGCGGTTTGTGAAATATG
TGAGTGCGACAGCGCCTGGGAGCAGGTGGGATGTGATAAGTGAGTATTCT
CTAAGGCAAGGGGGGAAGGAGGAGGGAAAATATGGAGGGGTGGAGTGGAA
GAATGTTGCATAAAGCAATGCAGCGAAACACGGGAGCGGGCCAATAATGA
AAGAAATGACGAGTATCGCGGAGCACAGCTAAG

Coding sequence (CDS) from alignment at scaffold_3:1077965..1079897+

>mRNA_437 ID=mRNA_437|Name=jgi.p|Nanoce1779_2|577322|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_3:1077965..1079897+ (Nannochloropsis oceanica)
ATGACAACGCCTTCTGAAGGCCCTGAAGATACTCCCGCCGATGAATCTGC
AGTGCCGCCCCCCGACTCTCCAAGCCGCAAGCGCGCGCGCGTCGAGGCTG
CGCCCGACACCATTACAAATACCACCACTACACCGACCTCAAAAACAGCG
CTCCGCGAGACCTTGCTGGACCCAACCCATGTCACGGCGTTGCGCCAGGC
GTATCTACAAGCCTTGGGCTATCCCCACTGCGTCGTGCAAGACGTCCTGG
ACCCTTCTTTTTTCCGAGATCTCCGGGAGGAAATGGTGGGCTCGCTCTCG
GCTACATTCAAGGAGACGGACCTCTACAAGCTCTACCAGACAGGAGACCT
GGCCAATTTGGACATCAACGATCCGGACATTACTGATCGATTGTCAAATT
TATTAGCCTTGCGCCAAGCCATCTACTCACAGACGTTCCGGGCATTCGTA
AGGAAGATTACGGGCTGTCAACCCTTGACGGACCGCACGGACTGCTCCTC
CAATTTGTACGCTCAAGGCTGTCACTTGCTTTGCCATGATGACGTGATTG
GCACACGCTGTATTGCTTACATCATATACCTGACCGACCCGGAGGAGACC
TGGGAAGAGATGGATGGAGGCGCATTGGAGATCTACCCTCCCTCGGAGCC
AGGCAAACTCGGCGTCCCCGCCGTGGCTCCCGTTAAGAGTTACCTGCCCC
TGCCCAACACCATGGCCTTTTTCGCCGTCCTCCCCGGACAGAGTTTCCAC
GCTGTGGAAGAGGTGTATAAGGACGGAAAGATGCGTTTGAGTGTCTCGGG
GTGGTATCACGCTGCTGCCACTCCCTCAGGAGTCCCAGACCTTGCCTCAT
TGAATCAACCGCAGGCTCGAAGAGACGACGACTCCACGGTTTTCTCCACC
CTACCACAACTACCATCCCTTTCTATTGCGACTGACTCCTCGCTCGCCAA
GTGGGTAAATCCGACGTATTTGAAGCCAGGGGCCATGGAGCAAATATTGA
CTCGTTTTCAAGAAGATGGCAGTATCTTACTGCATGGATTTTTGCTGCCT
GAGGTGGCTCAACGTGCAGCGACGTTGTTTCGACGGCAAGACGAGATCGA
TGGAGTGGGACACGGCATCAAAGCTGCACATGGTGTGGGGTTTGTCAAGG
GGACTTGGGTGCCAGTGGGGCCACCGCACAAACAACGGTACATGCGTTTG
GTGGCTGGACCTGCTGCGACGGAGGAGAAAGAGGACAGTGCAGAGAAGGA
CAGCAACAACAGCCACATTTCTATTGCAGAAGTTGCTTTGTTTCTGACGA
CGTTGCGTGATGAGCTTTTTGGATCGGCTGTTTTTGCCCTCTACCTTGCC
CGATTGACCGGCGTTGAGCCCTCGACCGTTAATACCGAGGCCCGTCGTTT
TCGCCCCGGGTTGGACTACACGCTCGCCCACTACGGAATCGTGACCAAAG
ACCATCGCCTGGATGCGACCTTGTCATTTGTGGATGATGAGAAGAAGGGA
AGGAAAGCTGCTTGGGGTTCCGGGGACGTTGGGGGGTTTGAGTGTTACAT
CAAGGCGGAGGAGGGAAATGATGGCGTGGAGGCTGCTGAGAGCTACAGGA
GGCAGGCACAAGGCAAAGAGGAGGAGGAAGAAGATGTCTTGACTGTGTTT
GCCGCGCACAATGCGTTGAGTTTGGTGTTACGGCAGACGCGTGCGATGCG
GTTTGTGAAATATGTGAGTGCGACAGCGCCTGGGAGCAGGTGGGATGTGA
TAAGTGAGTATTCTCTAAGGCAAGGGGGGAAGGAGGAGGGAAAATATGGA
GGGGTGGAGTGGAAGAATGTTGCATAA

Synonyms

Publications