jgi.p|Nanoce1779_2|588893, mRNA_4369 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588893
Unique Name	mRNA_4369
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2118
Alignment location	scaffold_10:420065..422406 -

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Properties


Property Name	Value
TranscriptId	588979
Track	FilteredModels2
ProteinId	588893

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:420065..422406 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588893	gene_4369	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588893	mRNA_4369-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4369	CDS_4369	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:420065..422406-
coding sequence from alignment at scaffold_10:420065..422406-

mRNA sequence

>mRNA_4369 ID=mRNA_4369|Name=jgi.p|Nanoce1779_2|588893|organism=Nannochloropsis oceanica|type=mRNA|length=2118bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGCG
GAGAAGGAGGACGACGACGACGGCCCGTGTATGAAGCGGAGGTGATCGAG
GGTGGGGAAGAGAAAGATGAGGAGGAGGAAGACAAGGAGGAAAGAGAGGA
ACGGCGACAACGAGCGCGGCGGAGAGGGAGGAAGGCGAATGACGAGCAAG
TGGAGGGGGGAAGAGAGGAGTTTGTAGAAGGCGATCTGGCGGGAAGGCCG
ACGGTGAAACTTGAAGTAGGGGGAGTGGAGGAGGAGGACGGGCCCGTGGA
CGAGGACGACGAAGACGCCATAGCCCGTCGGCGGGCGGCGATACGGGAGC
GGCTCAAGAATCTACAGATGGAGGAAAAAGCGGCGGCAGCAGCAGGAGGA
GGGGCAAGAGCCGACGCCAAGCCGGAGAGTGACACGGAGGAGGACGAGGA
CGGGGGGGAGGATGAGGATGACGACTCTGAGTACGAGACAGACAGCGACG
ATGAGAGTGAGGAGGAGGGAGGGGGAGGAGGCGGGTTGTTCGCCCTACCC
CGGCCTGTATTCATTCCTAAGCACAAACGGGAGCTGGTCCAGCAGAGGGA
GCAAGAAGAGAGGGAGGAAGCTGAGAAGGAAAGCAAGGCCGTGCTTGCTA
AGGAGCGAAGAATACGCGATACCCGGAACCTGGTGGCGGAGGAGGTGAGG
AAGGAGGCCGAGGGGGCGGCCGCGTTAGAGGGAGGGGGAGAAGACGGTTA
TGGGTCTGACGAAGGAGCTCCCGATGACACGGACCGACCGGAAGAAGACG
CCTTGGAGTTTGAAAACTGGCGGTTGAGGGAGTTGGGGAGGGTGAAGAGG
GACAAGGAGATGAGGGAGGCGAGGGCGAGGGAGAAAATGGAGGTGGCGAG
AAGGAGAGCAATGACGGAGGGGGAGCGAGATGCGGAGGACCGACGGTTGG
GGCGGGGGGTGTATGCGAAGCCAGAGGTGCAGAAGACGAAGAGGAGGTTT
ATGCAGAAATACTACCATAAAGGAGCTTTCTACATGGACGAGGAGAGCAT
CAGGGAGAAGGACGACGTGAGAAGGAGGGCGGCGGATGACGCGACTGGGG
AGGACAAGTTCAATCGTGCAGCGTTACCCCAAGTGATGCAGGTGAAGAAG
TTTGGACGAGCAGGACAGACGAAATATACACACTTGCTTGACCAGGACAC
GACACGGGCGGAGAAGCACAAGACGGGGTCAGTCTGGCAGCAACGAGACC
AGGATAAGCGCCAGGGCGTAGTGGGGGAGGCCAAGAATCGATTTGCGCAC
AAGCTGGGTGGTACGGGCGACATTGACTCTGCGGGGCGGCGGAAAAAGCA
GGGGTAGTGATGGGAAGGAACAAAGACGGAAGGCGGGAGGCGGGGGGTGG
CGGGGTTGTAGATGTGCGCGTGGTGCTATAGCAATACATGTACGGGGCAG
GAGAGGGAGGCACATATGAACAGAACAGCGAGAAGACTAAGACATGATAG
GAAAAGCATTTTTTCTTCTTTAAAAAAGGAACAGGCAAAGAAGACGAACC
AAGAAAGAGTTTTGCTTTGCACCGTTCGGGGAGGTCGGCATTGGGTGTGC
CCATAAATATGGGGAAACGGCTTGTTGGATACTCCCCGTAGCGTCGAGAG
CAAGAATGAGACCCACAAGACGGTTTCGTGTGCATGGTGGTGCCCCGCAT
TTGAATCTTCCAATGCCCAGCGGCTTCGGAACTTTGGGGCAGCATGAAGC
ATGTGCAGCATGTTGATGGGTACTTAGACGGCTTGCGACAAAAATGCTGG
CTTCTCCTTGAAAGCGTCGGCTTCAAGACACCTCGCCGAGTGCGAACGCG
TTCTCCACCTGCCCATGCAATGACCCGAATGTCACACCCACCTTTGTGCC
CACACACAGGCGTAGACATACAAGCATCGTTGTCAACACCGTTTGTTAGT
GAGCAACGGCAGAGATCGGGCGCAGCGGCAGCCGCGCCGTCATGTTGAGC
ATCATTAAGCATCACTTTGGGCTGCCGCCCACGACTTGCCAGCGTCGTCG
TGTGCAAGCCCTCTTGGCAATCACATTGAACAAACCATGTGCATGGCAGA
GCTTTATTTCTCTCTCGG

protein sequence of jgi.p|Nanoce1779_2|588893

>mRNA_4369-protein ID=mRNA_4369-protein|Name=jgi.p|Nanoce1779_2|588893|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MEEKAAAAAGGGARADAKPESDTEEDEDGGEDEDDDSEYETDSDDESEEE
GGGGGGLFALPRPVFIPKHKRELVQQREQEEREEAEKESKAVLAKERRIR
DTRNLVAEEVRKEAEGAAALEGGGEDGYGSDEGAPDDTDRPEEDALEFEN
WRLRELGRVKRDKEMREARAREKMEVARRRAMTEGERDAEDRRLGRGVYA
KPEVQKTKRRFMQKYYHKGAFYMDEESIREKDDVRRRAADDATGEDKFNR
AALPQVMQVKKFGRAGQTKYTHLLDQDTTRAEKHKTGSVWQQRDQDKRQG
VVGEAKNRFAHKLGGTGDIDSAGRRKKQG*

mRNA from alignment at scaffold_10:420065..422406-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4369 ID=mRNA_4369|Name=jgi.p|Nanoce1779_2|588893|organism=Nannochloropsis oceanica|type=mRNA|length=2342bp|location=Sequence derived from alignment at scaffold_10:420065..422406- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGCG
GAGAAGGAGGACGACGACGACGGCCCGTGTATGAAGCGGAGGTGATCGAG
GGTGGGGAAGAGAAAGATGAGGAGGAGGAAGACAAGGAGGAAAGAGAGGA
ACGGCGACAACGAGCGCGGCGGAGAGGGAGGAAGGCGAATGACGAGCAAG
TGGAGGGGGGAAGAGAGGAGTTTGTAGAAGGCGATCTGGCGGGAAGGCCG
ACGGTGAAACTTGAAGTAGGGGGAGTGGAGGAGGAGGACGGGCCCGTGGA
CGAGGACGACGAAGACGCCATAGCCCGTCGGCGGGCGGCGATACGGGAGC
GGCTCAAGAATCTACAGATGGAGGAAAAAGCGGCGGCAGCAGCAGGAGGA
GGGGCAAGAGCCGACGCCAAGCCGGAGAGTGACACGGAGGAGGACGAGGA
CGGGGGGGAGGATGAGGATGACGACTCTGAGTACGAGACAGACAGCGACG
ATGAGAGTGAGGAGGAGGGAGGGGGAGGAGGCGGGTTGTTCGCCCTACCC
CGGCCTGTATTCATTCCTAAGCACAAACGGGAGCTGGTCCAGCAGAGGGA
GCAAGAAGAGAGGGAGGAAGCTGAGAAGGAAAGCAAGGCCGTGCTTGCTA
AGGAGCGAAGAATACGCGATACCCGGAACCTGGTGGCGGAGGAGGTGAGG
AAGGAGGCCGAGGGGGCGGCCGCGTTAGAGGGAGGGGGAGAAGACGGTTA
TGGGTCTGACGAAGGAGCTCCCGATGACACGGACCGACCGGAAGAAGACG
CCTTGGAGTTTGAAAACTGGCGGTTGAGGGAGTTGGGGAGGGTGAAGAGG
GACAAGGAGATGAGGGAGGCGAGGGCGAGGGAGAAAATGGAGGTGGCGAG
AAGGAGAGCAATGACGGAGGGGGAGCGAGATGCGGAGGACCGACGGTTGG
GGCGGGGGGTGTATGCGAAGCCAGAGGTGCAGAAGACGAAGAGGAGGTTT
ATGCAGAAATACTACCATAAAGGAGCTTTCTACATGGACGAGGAGAGCAT
CAGGGAGAAGGACGACGTGAGAAGGAGGGCGGCGGATGACGCGACTGGGG
AGGACAAGTTCAATCGTGCAGCGTTACCCCAAGTGATGCAGGTGAAGAAG
TTTGGACGAGCAGGACAGACGAAATATACACACTTGCTTGACCAGGACAC
GACACGGGCGGAGGTACGTCCTTTGACGAGGGGGGTGGGGGAGAGGAAGA
GAGTCAAGGGCAGAGATGGGTTTTTGGTGTATCTGTGAATGTCTCTGTAT
CAGCGTTTGCGTGTGTATACCCATGTATTTCTCATTCTGCCCTCCCCTCC
CCTTCCCGCCTCCCCACCTGATGACACCACTATCGACCTCCCCTTAATTT
TTCCTTGATACATTCCCCCTCAACCGAAAAATAACAGAAGCACAAGACGG
GGTCAGTCTGGCAGCAACGAGACCAGGATAAGCGCCAGGGCGTAGTGGGG
GAGGCCAAGAATCGATTTGCGCACAAGCTGGGTGGTACGGGCGACATTGA
CTCTGCGGGGCGGCGGAAAAAGCAGGGGTAGTGATGGGAAGGAACAAAGA
CGGAAGGCGGGAGGCGGGGGGTGGCGGGGTTGTAGATGTGCGCGTGGTGC
TATAGCAATACATGTACGGGGCAGGAGAGGGAGGCACATATGAACAGAAC
AGCGAGAAGACTAAGACATGATAGGAAAAGCATTTTTTCTTCTTTAAAAA
AGGAACAGGCAAAGAAGACGAACCAAGAAAGAGTTTTGCTTTGCACCGTT
CGGGGAGGTCGGCATTGGGTGTGCCCATAAATATGGGGAAACGGCTTGTT
GGATACTCCCCGTAGCGTCGAGAGCAAGAATGAGACCCACAAGACGGTTT
CGTGTGCATGGTGGTGCCCCGCATTTGAATCTTCCAATGCCCAGCGGCTT
CGGAACTTTGGGGCAGCATGAAGCATGTGCAGCATGTTGATGGGTACTTA
GACGGCTTGCGACAAAAATGCTGGCTTCTCCTTGAAAGCGTCGGCTTCAA
GACACCTCGCCGAGTGCGAACGCGTTCTCCACCTGCCCATGCAATGACCC
GAATGTCACACCCACCTTTGTGCCCACACACAGGCGTAGACATACAAGCA
TCGTTGTCAACACCGTTTGTTAGTGAGCAACGGCAGAGATCGGGCGCAGC
GGCAGCCGCGCCGTCATGTTGAGCATCATTAAGCATCACTTTGGGCTGCC
GCCCACGACTTGCCAGCGTCGTCGTGTGCAAGCCCTCTTGGCAATCACAT
TGAACAAACCATGTGCATGGCAGAGCTTTATTTCTCTCTCGG

Coding sequence (CDS) from alignment at scaffold_10:420065..422406-

>mRNA_4369 ID=mRNA_4369|Name=jgi.p|Nanoce1779_2|588893|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_10:420065..422406- (Nannochloropsis oceanica)
AAGCACAAGACGGGGTCAGTCTGGCAGCAACGAGACCAGGATAAGCGCCA
GGGCGTAGTGGGGGAGGCCAAGAATCGATTTGCGCACAAGCTGGGTGGTA
CGGGCGACATTGACTCTGCGGGGCGGCGGAAAAAGCAGGGGTAGATGGAG
GAAAAAGCGGCGGCAGCAGCAGGAGGAGGGGCAAGAGCCGACGCCAAGCC
GGAGAGTGACACGGAGGAGGACGAGGACGGGGGGGAGGATGAGGATGACG
ACTCTGAGTACGAGACAGACAGCGACGATGAGAGTGAGGAGGAGGGAGGG
GGAGGAGGCGGGTTGTTCGCCCTACCCCGGCCTGTATTCATTCCTAAGCA
CAAACGGGAGCTGGTCCAGCAGAGGGAGCAAGAAGAGAGGGAGGAAGCTG
AGAAGGAAAGCAAGGCCGTGCTTGCTAAGGAGCGAAGAATACGCGATACC
CGGAACCTGGTGGCGGAGGAGGTGAGGAAGGAGGCCGAGGGGGCGGCCGC
GTTAGAGGGAGGGGGAGAAGACGGTTATGGGTCTGACGAAGGAGCTCCCG
ATGACACGGACCGACCGGAAGAAGACGCCTTGGAGTTTGAAAACTGGCGG
TTGAGGGAGTTGGGGAGGGTGAAGAGGGACAAGGAGATGAGGGAGGCGAG
GGCGAGGGAGAAAATGGAGGTGGCGAGAAGGAGAGCAATGACGGAGGGGG
AGCGAGATGCGGAGGACCGACGGTTGGGGCGGGGGGTGTATGCGAAGCCA
GAGGTGCAGAAGACGAAGAGGAGGTTTATGCAGAAATACTACCATAAAGG
AGCTTTCTACATGGACGAGGAGAGCATCAGGGAGAAGGACGACGTGAGAA
GGAGGGCGGCGGATGACGCGACTGGGGAGGACAAGTTCAATCGTGCAGCG
TTACCCCAAGTGATGCAGGTGAAGAAGTTTGGACGAGCAGGACAGACGAA
ATATACACACTTGCTTGACCAGGACACGACACGGGCGGAGAAGCACAAGA
CGGGGTCAGTCTGGCAGCAACGAGACCAGGATAAGCGCCAGGGCGTAGTG
GGGGAGGCCAAGAATCGATTTGCGCACAAGCTGGGTGGTACGGGCGACAT
TGACTCTGCGGGGCGGCGGAAAAAGCAGGGGTAGATGGAGGAAAAAGCGG
CGGCAGCAGCAGGAGGAGGGGCAAGAGCCGACGCCAAGCCGGAGAGTGAC
ACGGAGGAGGACGAGGACGGGGGGGAGGATGAGGATGACGACTCTGAGTA
CGAGACAGACAGCGACGATGAGAGTGAGGAGGAGGGAGGGGGAGGAGGCG
GGTTGTTCGCCCTACCCCGGCCTGTATTCATTCCTAAGCACAAACGGGAG
CTGGTCCAGCAGAGGGAGCAAGAAGAGAGGGAGGAAGCTGAGAAGGAAAG
CAAGGCCGTGCTTGCTAAGGAGCGAAGAATACGCGATACCCGGAACCTGG
TGGCGGAGGAGGTGAGGAAGGAGGCCGAGGGGGCGGCCGCGTTAGAGGGA
GGGGGAGAAGACGGTTATGGGTCTGACGAAGGAGCTCCCGATGACACGGA
CCGACCGGAAGAAGACGCCTTGGAGTTTGAAAACTGGCGGTTGAGGGAGT
TGGGGAGGGTGAAGAGGGACAAGGAGATGAGGGAGGCGAGGGCGAGGGAG
AAAATGGAGGTGGCGAGAAGGAGAGCAATGACGGAGGGGGAGCGAGATGC
GGAGGACCGACGGTTGGGGCGGGGGGTGTATGCGAAGCCAGAGGTGCAGA
AGACGAAGAGGAGGTTTATGCAGAAATACTACCATAAAGGAGCTTTCTAC
ATGGACGAGGAGAGCATCAGGGAGAAGGACGACGTGAGAAGGAGGGCGGC
GGATGACGCGACTGGGGAGGACAAGTTCAATCGTGCAGCGTTACCCCAAG
TGATGCAGGTGAAGAAGTTTGGACGAGCAGGACAGACGAAATATACACAC
TTGCTTGACCAGGACACGACACGGGCGGAG

Synonyms

Publications