Properties
| Property Name | Value |
|---|
| TranscriptId | 588962 |
| Track | FilteredModels2 |
| ProteinId | 588876 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:400960..402754 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4366 ID=mRNA_4366|Name=jgi.p|Nanoce1779_2|588876|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
CAGGACACCCACAAGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCC
CTTAAAATGCCATGTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTT
CGCCGCAGCAACGGCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTG
CCATCTTCGACCTCATTGAAACACCACCAGCACTTCAAACAGTACCGCCA
GCAGCAAATACGTGGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGG
CGCCGGGGGAAGAAGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTAC
GATGGGGGAGGCTTCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCT
TGCCATGCCCTCGGCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAA
TCACACCCGAGTCATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAG
ATACTGGTGGTGGGCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCC
TGCCACGCTGGCGTTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGG
ACACGACATCCGCGTGTTCTACATTCAATATTTTGAACCAGGAGGACCGG
CGGGTGGCTGCTGCTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGA
GGAATAGGCAGGCAGGTTGTGTATATAGATGAAGATAAAGATGAACATGA
CAAGGGAGTGATAGAAGAGCCCTCTAGTATATGACGGGGGGGAAACTCTT
GACACTGCAATGGTGGGCGTCTTCTTTCTGCTTGCCCTCTTTCTCCGTTG
TGTTTTTTTCCTTTTTGTATCCTCCTCCCCTCCTCTATTTATATCTTCTA
ATTTTCTGTTATTTCTCTGTGCTTCAAATCGCGCAAGGACAAATGGCATG
GGCAGGAAGATATAGCCGCACTTATTGGTGGGCGAGACTTTCTTTTTTGA
AAGTTTGCCCTCTTCCAGTTGTTTTTGCTCCTGACAAGATGTGTTTCTCT
TCTTTTGCTGTTGCCCTTTCCTCTCTTTATTCTATTTACCTCTTCGCCCT
TCCTTTCATCTTTTTCTCTCTCATTCTCCCTCGCATTTTACTCGCATACA
CTACTTTTTGGTGTCAGCCATTTGCTGCTGCTGCTGCTCCTTGTTACACG
CTCTCTTTTTAACGCGGTCAAGAACTGTCTCACACTCACAAACAAATTCA
TACACATACAACTACACTTGCTCCTTCCCGTTCAATCTATTCTCCCAGCC
ATTAGATCTTTCTCCATTCCTTTCTCCTTTCCTCTTTCCTTGCCTCTGTC
ACGGCACAGCCCGCGCACCAAGAGTAGCACTGCTGCTAGCGCTGCTGCTC
CTGCTCCTCCTACTCCTCCTGCCCCTCCTCCTGCTCCTCCTCCTGCTGCT
GCTGTCTTGCTATCAACCCCGTCTTGGCCAACTGCACCCCTCCATTTGCA
GAAGGCGCGCGACGACCACCATACATCATGGGGCTCAGCGTGCACTTGCT
CTCCTCGGCGCCCTTCAGAAACGACGACAACAAGGAATCATCCGTCCTTC
CCGAGGCAGGCGAGATAATCCCACCCCGCCTAGCCGACAGCCCAACCTCC
ATTCCCTCCTCTGCCATCCTTCGTTTCTCTCCCCGAGACATGGCCGGATT
CACGTCAAAGTCCCCATCCACCTCAATGTCCATCCTCGCGTCCTCTTCAC
CCACTGCTGCGGCTGCTGCTGCTACTGCTGCTGCTACCCGCTTGGCCCCC
CGTGCCGCCGCCTTGCCCGCAGCTTTCTCCTCTCGTCGAGCCTCT back to topprotein sequence of jgi.p|Nanoce1779_2|588876 >mRNA_4366-protein ID=mRNA_4366-protein|Name=jgi.p|Nanoce1779_2|588876|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLPRIARRIRPLKCHVVNSSSSSSSSGSPQQRPNASASSAFPLLPSSTSL
KHHQHFKQYRQQQIRGLADLGKGVDILAPGEEETGKDRTFLLGYDGGGFE
VRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGT
GEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAAL
LAVDTAAEENEE* back to topmRNA from alignment at scaffold_10:400960..402754- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4366 ID=mRNA_4366|Name=jgi.p|Nanoce1779_2|588876|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_10:400960..402754- (Nannochloropsis oceanica)
CAGGACACCCACAAGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCC
CTTAAAATGCCATGTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTT
CGCCGCAGCAACGGCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTG
CCATCTTCGACCTCATTGAAACACCACCAGCACTTCAAACAGTACCGCCA
GCAGCAAATACGTGGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGG
CGCCGGGGGAAGAAGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTAC
GATGGGGGAGGCTTCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCT
TGCCATGCCCTCGGCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAA
TCACACCCGAGTCATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAG
ATACTGGTGGTGGGCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCC
TGCCACGCTGGCGTTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGG
ACACGACATCCGCGTGTTCTACATTCAATATTTTGAACCAGGAGGACCGG
CGGGTGGCTGCTGCTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGA
GGAATAGGCAGGCAGGTTGTGTATATAGATGAAGATAAAGATGAACATGA
CAAGGGAGTGATAGAAGAGCCCTCTAGTATATGACGGGGGGGAAACTCTT
GACACTGCAATGGTGGGCGTCTTCTTTCTGCTTGCCCTCTTTCTCCGTTG
TGTTTTTTTCCTTTTTGTATCCTCCTCCCCTCCTCTATTTATATCTTCTA
ATTTTCTGTTATTTCTCTGTGCTTCAAATCGCGCAAGGACAAATGGCATG
GGCAGGAAGATATAGCCGCACTTATTGGTGGGCGAGACTTTCTTTTTTGA
AAGTTTGCCCTCTTCCAGTTGTTTTTGCTCCTGACAAGATGTGTTTCTCT
TCTTTTGCTGTTGCCCTTTCCTCTCTTTATTCTATTTACCTCTTCGCCCT
TCCTTTCATCTTTTTCTCTCTCATTCTCCCTCGCATTTTACTCGCATACA
CTACTTTTTGGTGTCAGCCATTTGCTGCTGCTGCTGCTCCTTGTTACACG
CTCTCTTTTTAACGCGGTCAAGAACTGTCTCACACTCACAAACAAATTCA
TACACATACAACTACACTTGCTCCTTCCCGTTCAATCTATTCTCCCAGCC
ATTAGATCTTTCTCCATTCCTTTCTCCTTTCCTCTTTCCTTGCCTCTGTC
ACGGCACAGCCCGCGCACCAAGAGTAGCACTGCTGCTAGCGCTGCTGCTC
CTGCTCCTCCTACTCCTCCTGCCCCTCCTCCTGCTCCTCCTCCTGCTGCT
GCTGTCTTGCTATCAACCCCGTCTTGGCCAACTGCACCCCTCCATTTGCA
GAAGGCGCGCGACGACCACCATACATCATGGGGCTCAGCGTGCACTTGCT
CTCCTCGGCGCCCTTCAGAAACGACGACAACAAGGAATCATCCGTCCTTC
CCGAGGCAGGCGAGATAATCCCACCCCGCCTAGCCGACAGCCCAACCTCC
ATTCCCTCCTCTGCCATCCTTCGTTTCTCTCCCCGAGACATGGCCGGATT
CACGTCAAAGTCCCCATCCACCTCAATGTCCATCCTCGCGTCCTCTTCAC
CCACTGCTGCGGCTGCTGCTGCTACTGCTGCTGCTACCCGCTTGGCCCCC
CGTGCCGCCGCCTTGCCCGCAGCTTTCTCCTCTCGTCGAGCCTCT back to topCoding sequence (CDS) from alignment at scaffold_10:400960..402754- >mRNA_4366 ID=mRNA_4366|Name=jgi.p|Nanoce1779_2|588876|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_10:400960..402754- (Nannochloropsis oceanica)
ATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCATGTAGT
AAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACGGCCAA
ACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCTCATTG
AAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGTGGTCT
GGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGAAGAAA
CGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCTTCGAG
GTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCGGCCTG
CTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTCATTGA
CAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGGGCACG
GGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCGTTTCT
TGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGCGTGTT
CTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTGCTTTG
CTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAG back to top
|