Properties
| Property Name | Value |
|---|
| TranscriptId | 588947 |
| Track | FilteredModels2 |
| ProteinId | 588861 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:390941..391992 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4362 ID=mRNA_4362|Name=jgi.p|Nanoce1779_2|588861|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
CAGTTGCCCACAGTCCCATCATCATGCGCATCATCGTCATTGCGGCCTTC
GTAGCTGCCACGACCACGGCCTTCCAGCTCCCCTTGAACTTCCGCAGCCC
TTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACGACAACGGCA
TGGAGAGAAGAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCATG
GGTGCCTTGGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTGC
CTCCCCTGTTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTTA
AAGATAGCGTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAAG
GATTATTATGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAAT
TCGAAGGGATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAAA
AGGACACCGACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGTC
GACTTCCTTGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATAA
AGAGCTGGCGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTCC
AGAAAGTGTTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGTG
AGTGTTCGGTTGGAAACAGCCAGCACAGAGCTTTAATGCTGGTTGGAAAA
ATGGTGAGAATACGTACAATGCGTGTGCGTGCGTGCTTGGATAGGAGGAT
GTAGATTTACTTCTTGAAAGAGGAAGAAAAGGAAGAGGAAGAATAATGAT
AATGAGTAGAATAATTACGAGAAGAAAATGAAATGAAAGCCACACCTACT
TTTCAAAAGCGGGAAAAGGAGGAAAGGAGAATACTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|588861 >mRNA_4362-protein ID=mRNA_4362-protein|Name=jgi.p|Nanoce1779_2|588861|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRIIVIAAFVAATTTAFQLPLNFRSPSPRTQPLAASRNDDNGMERREVLQ
YSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALK
LYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYN
QFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELIS
TTRYATEPVSVRLETASTEL* back to topmRNA from alignment at scaffold_10:390941..391992+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4362 ID=mRNA_4362|Name=jgi.p|Nanoce1779_2|588861|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at scaffold_10:390941..391992+ (Nannochloropsis oceanica)
CAGTTGCCCACAGTCCCATCATCATGCGCATCATCGTCATTGCGGCCTTC
GTAGCTGGTACGTCGAAGGGAAAAAGCTTCCAACCCCCTTTCCGATGGCC
TTATTTTTCCGCGTTGCTTGAATACAAACACAGCCACGACCACGGCCTTC
CAGCTCCCCTTGAACTTCCGCAGCCCTTCCCCTCGGACACAACCACTGGC
GGCCTCTCGTAACGACGACAACGGCATGGAGAGAAGGTACGTGGCGGATA
GGTTCCCCCCCCCCCCCCCCCCCTTTAAACACACACGCTTCCATTCTTGT
CCCACCTACCTTGTTCATCCATAGAGAAGTGCTCCAGTATTCTGCCACCG
CATTGAGTGCCATGGGTGCCTTGGGTAGCCTCCTCGCTTCTTTCCCCAGC
GCGGCCGGTGCTGCCTCCCCTGTTATAAGCGAGCTCAAAATTCGGGAGAG
TGTCAAGGGGGTTAAAGATAGCGTGGAAGCTTTAAAGCTGTATGAAGATT
TTGTGTCCACTAAGGATTATTATGGTATTAAGAAGTCGTTGCGAGTTCCC
CCCGTTTCGGAAATTCGAAGGGATTGCCGGCGCATCATTGCTGGGTTGGA
CGGCCCTATCAAAAAGGACACCGACAAGGCTTATAATCAATTTATTGAAA
ATCTGGAACAAGTCGACTTCCTTGCTACCAAAGCAATTCAAAATGATAAT
AAAGCGGGAGATAAAGAGCTGGCGCAGATGGCTGCAAGATTCACGGATGC
CCAAGTGAAGCTCCAGAAAGTGTTGGAATTGATTTCGACTACGCGTTATG
CGACCGAGCCCGTGAGTGTTCGGTTGGAAACAGCCAGCACAGAGCTTTAA
TGCTGGTTGGAAAAATGGTGAGAATACGTACAATGCGTGTGCGTGCGTGC
TTGGATAGGAGGATGTAGATTTACTTCTTGAAAGAGGAAGAAAAGGAAGA
GGAAGAATAATGATAATGAGTAGAATAATTACGAGAAGAAAATGAAATGA
AAGCCACACCTACTTTTCAAAAGCGGGAAAAGGAGGAAAGGAGAATACTT
AA back to topCoding sequence (CDS) from alignment at scaffold_10:390941..391992+ >mRNA_4362 ID=mRNA_4362|Name=jgi.p|Nanoce1779_2|588861|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_10:390941..391992+ (Nannochloropsis oceanica)
ATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGCCACGACCACGGCCTT
CCAGCTCCCCTTGAACTTCCGCAGCCCTTCCCCTCGGACACAACCACTGG
CGGCCTCTCGTAACGACGACAACGGCATGGAGAGAAGAGAAGTGCTCCAG
TATTCTGCCACCGCATTGAGTGCCATGGGTGCCTTGGGTAGCCTCCTCGC
TTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTGTTATAAGCGAGCTCA
AAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGCGTGGAAGCTTTAAAG
CTGTATGAAGATTTTGTGTCCACTAAGGATTATTATGGTATTAAGAAGTC
GTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGGATTGCCGGCGCATCA
TTGCTGGGTTGGACGGCCCTATCAAAAAGGACACCGACAAGGCTTATAAT
CAATTTATTGAAAATCTGGAACAAGTCGACTTCCTTGCTACCAAAGCAAT
TCAAAATGATAATAAAGCGGGAGATAAAGAGCTGGCGCAGATGGCTGCAA
GATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTGTTGGAATTGATTTCG
ACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCGGTTGGAAACAGCCAG
CACAGAGCTTTAAATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGCCA
CGACCACGGCCTTCCAGCTCCCCTTGAACTTCCGCAGCCCTTCCCCTCGG
ACACAACCACTGGCGGCCTCTCGTAACGACGACAACGGCATGGAGAGAAG
AGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCATGGGTGCCTTGG
GTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTGTT
ATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGCGT
GGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAAGGATTATTATG
GTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGGAT
TGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAAAAGGACACCGA
CAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGTCGACTTCCTTG
CTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATAAAGAGCTGGCG
CAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTGTT
GGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCGGT
TGGAAACAGCCAGCACAGAGCTTTAAATGCGCATCATCGTCATTGCGGCC
TTCGTAGCTGCCACGACCACGGCCTTCCAGCTCCCCTTGAACTTCCGCAG
CCCTTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACGACAACG
GCATGGAGAGAAGAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCC
ATGGGTGCCTTGGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGC
TGCCTCCCCTGTTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGG
TTAAAGATAGCGTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACT
AAGGATTATTATGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGA
AATTCGAAGGGATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCA
AAAAGGACACCGACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAA
GTCGACTTCCTTGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGA
TAAAGAGCTGGCGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGC
TCCAGAAAGTGTTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCC
GTGAGTGTTCGGTTGGAAACAGCCAGCACAGAGCTTTAA back to top
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