jgi.p|Nanoce1779_2|588856, mRNA_4361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588856
Unique NamemRNA_4361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1357
Alignment locationscaffold_10:388766..390525 -

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Properties
Property NameValue
TranscriptId588942
TrackFilteredModels2
ProteinId588856
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:388766..390525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588856gene_4361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588856mRNA_4361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4361CDS_4361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4361 ID=mRNA_4361|Name=jgi.p|Nanoce1779_2|588856|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp
AGTATTATAATAGCTCACGCCCTTCGTTTCTACTTCTATTCCGCCTCGGA
CGCAAGCTTCCATGTCTCGCGGAGTGATTCTAGTGCTGGCCTTGCTAGCC
ACGGCATCGACCACCAGAGCTTTTTTCGGGCACGTTGGTCCTCGTACCGC
GTCCTCCGTCGCCAACGCTCTACGTCTCGGAAACCGTCACGCAGCCACAT
CTGCCCTCTCTATGATGGCAGGCGAGAAAAAATACCAGGTGGTGTTGGTC
CGGCATGGAGAAAGCACGTGGAATGACGAGAACAAGTTCACGGGGTGGTA
TGATTGCCCCTTGTCGGTCAAGGGGTTGGAGGAGGCTAAGGAGGCAGGCA
AGGCGCTCAAGGCGGCAAACTTGAAGTTTGATCTGGCGTACACCTCGGTA
TTGCGTCGGGCGATCCACACCTTGTGGTTGTGTTTGGAGGAATTGGATTT
GATGTGGATCCCGGTGAAGAAGAACTGGCGATTGAACGAGCGGCACTATG
GCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAAAGCACGGCATC
GAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCCCCTCCCGTCGT
CGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAAATACGCTGATG
TTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGACGACCAAAGCT
CGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGACATCAAGGCAGG
GAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCGGGCGCTGGTGC
AGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGTTGAATGTCCCA
ACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATGAAACCGGTGAA
GCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTTGGGGGACCAGA
AGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGACGGGACCCAAG
AAGTAGAATAGCGCAGATGAAACGTAGGTTATCTTTATCGTCATTTATGT
ATGTGTGTTCTTCGTGATTTGATTAGCCCTGAGGGAGGGGTGGGTAAGAT
GAGTGGAGGAGGCCAGAGGTGTAGCTGGAGAGCGTTTCGCAAATGCGAGG
TGTGTGTGGATGCCGGGTTTGGTCAAATGGCTGTGTAATTCCCATTTTTT
GTTCTTTTCAATTAAAAAAAGAGAAGTTGGAATGGAGGGTGTGTGAGAGT
TCAATTTAAGAAGGGGAAGGGTCGTCATTCGCTGTCGTGGTTGGCAGCTC
TTCTCGACCTCCCCACCAAAAGGAAGAAAGAAAGAAAAAGAGACGGGTGG
AAGGCAA
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protein sequence of jgi.p|Nanoce1779_2|588856

>mRNA_4361-protein ID=mRNA_4361-protein|Name=jgi.p|Nanoce1779_2|588856|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MSRGVILVLALLATASTTRAFFGHVGPRTASSVANALRLGNRHAATSALS
MMAGEKKYQVVLVRHGESTWNDENKFTGWYDCPLSVKGLEEAKEAGKALK
AANLKFDLAYTSVLRRAIHTLWLCLEELDLMWIPVKKNWRLNERHYGALQ
GLNKKETVEKHGIEQVNIWRRSYDIPPPVVDTSSEHYPGNDPKYADVPKS
ELPLTESLKTTKARFLPLWEDEIVPDIKAGKKLVIAAHGNTIRALVQHLD
GISEEVICELNVPTGVPLIYDLDENMKPVKHPDAIAPLQGHYLGDQKKIR
EKIAGVAAQTGPKK*
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mRNA from alignment at scaffold_10:388766..390525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4361 ID=mRNA_4361|Name=jgi.p|Nanoce1779_2|588856|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at scaffold_10:388766..390525- (Nannochloropsis oceanica)
AGTATTATAATAGCTCACGCCCTTCGTTTCTACTTCTATTCCGCCTCGGA
CGCAAGCTTCCATGTCTCGCGGAGTGGTATGTAGCAAGGATTGTCGGAGT
AATCGAGCAGCGTGCTCGTGACTGCAGGTGCTCTAGATGCCCTGTCCTCC
TTTTTTAACTTGAATCTTAACAAGTCACGCCACATTCTACTCTGACAGAT
TCTAGTGCTGGCCTTGCTAGCCACGGCATCGACCACCAGAGCTTTTTTCG
GGCACGTTGGTCCTCGTACCGCGTCCTCCGTCGCCAACGCTCTACGTCTC
GGAAACCGTCACGCAGCCACATCTGCCCTCTCTATGATGGCAGGCGAGAA
AAAATACCAGGTGGTGTTGGTCCGGCATGGAGAAAGCACGTGGAATGACG
AGAACAAGTTCACGGGGTGGTATGATTGCCCCTTGTCGGTCAAGGGGTTG
GAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAGGCGGCAAACTTGAAGTT
TGATCTGGCGTACACCTCGGTATTGCGTCGGGCGATCCACACCTTGTGGT
TGTGTTTGGAGGAATTGGATTTGATGTGGATCCCGGTGAAGAAGAACTGG
CGATTGAACGAGGTAATGCGGGATGATTGTGGGAGGGAAGGATAATTGTA
TAACAAATTGGGAATGAAGCTTGAGCGGAGATGGCGAGTTTTTGAAATGT
ATGCTTTCGGAAATTTATATTCCCCGTTGTGTAAATATAATGCCTTTTAC
TTTATTGAAGGACCAGCAAAAAGGAAGTTGTCGGACTCTATGTCTACATA
GAGTGGATAGGGTCAAATTCGAGATCGATTTTTTTTTCCGTGTTCTCCTC
TCACTTCCCTTGTCTTGTCTTCTCCTCCCCCCCGCATCTATAGCGGCACT
ATGGCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAAAGCACGGC
ATCGAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCCCCTCCCGT
CGTCGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAAATACGCTG
ATGTTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGACGACCAAA
GCTCGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGACATCAAGGC
AGGGAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCGGGCGCTGG
TGCAGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGTTGAATGTC
CCAACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATGAAACCGGT
GAAGCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTTGGGGGACC
AGAAGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGACGGGACCC
AAGAAGTAGAATAGCGCAGATGAAACGTAGGTTATCTTTATCGTCATTTA
TGTATGTGTGTTCTTCGTGATTTGATTAGCCCTGAGGGAGGGGTGGGTAA
GATGAGTGGAGGAGGCCAGAGGTGTAGCTGGAGAGCGTTTCGCAAATGCG
AGGTGTGTGTGGATGCCGGGTTTGGTCAAATGGCTGTGTAATTCCCATTT
TTTGTTCTTTTCAATTAAAAAAAGAGAAGTTGGAATGGAGGGTGTGTGAG
AGTTCAATTTAAGAAGGGGAAGGGTCGTCATTCGCTGTCGTGGTTGGCAG
CTCTTCTCGACCTCCCCACCAAAAGGAAGAAAGAAAGAAAAAGAGACGGG
TGGAAGGCAA
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Coding sequence (CDS) from alignment at scaffold_10:388766..390525-

>mRNA_4361 ID=mRNA_4361|Name=jgi.p|Nanoce1779_2|588856|organism=Nannochloropsis oceanica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_10:388766..390525- (Nannochloropsis oceanica)
CGGCACTATGGCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAAA
GCACGGCATCGAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCCC
CTCCCGTCGTCGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAAA
TACGCTGATGTTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGAC
GACCAAAGCTCGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGACA
TCAAGGCAGGGAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCGG
GCGCTGGTGCAGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGTT
GAATGTCCCAACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATGA
AACCGGTGAAGCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTTG
GGGGACCAGAAGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGAC
GGGACCCAAGAAGTAGATTCTAGTGCTGGCCTTGCTAGCCACGGCATCGA
CCACCAGAGCTTTTTTCGGGCACGTTGGTCCTCGTACCGCGTCCTCCGTC
GCCAACGCTCTACGTCTCGGAAACCGTCACGCAGCCACATCTGCCCTCTC
TATGATGGCAGGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAG
AAAGCACGTGGAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCC
TTGTCGGTCAAGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAA
GGCGGCAAACTTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGG
CGATCCACACCTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATC
CCGGTGAAGAAGAACTGGCGATTGAACGAGATGTCTCGCGGAGTGCGGCA
CTATGGCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAAAGCACG
GCATCGAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCCCCTCCC
GTCGTCGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAAATACGC
TGATGTTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGACGACCA
AAGCTCGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGACATCAAG
GCAGGGAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCGGGCGCT
GGTGCAGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGTTGAATG
TCCCAACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATGAAACCG
GTGAAGCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTTGGGGGA
CCAGAAGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGACGGGAC
CCAAGAAGTAGATTCTAGTGCTGGCCTTGCTAGCCACGGCATCGACCACC
AGAGCTTTTTTCGGGCACGTTGGTCCTCGTACCGCGTCCTCCGTCGCCAA
CGCTCTACGTCTCGGAAACCGTCACGCAGCCACATCTGCCCTCTCTATGA
TGGCAGGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAGAAAGC
ACGTGGAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCCTTGTC
GGTCAAGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAGGCGG
CAAACTTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGGCGATC
CACACCTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATCCCGGT
GAAGAAGAACTGGCGATTGAACGAGATGTCTCGCGGAGTGCGGCACTATG
GCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAAAGCACGGCATC
GAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCCCCTCCCGTCGT
CGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAAATACGCTGATG
TTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGACGACCAAAGCT
CGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGACATCAAGGCAGG
GAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCGGGCGCTGGTGC
AGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGTTGAATGTCCCA
ACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATGAAACCGGTGAA
GCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTTGGGGGACCAGA
AGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGACGGGACCCAAG
AAGTAGATTCTAGTGCTGGCCTTGCTAGCCACGGCATCGACCACCAGAGC
TTTTTTCGGGCACGTTGGTCCTCGTACCGCGTCCTCCGTCGCCAACGCTC
TACGTCTCGGAAACCGTCACGCAGCCACATCTGCCCTCTCTATGATGGCA
GGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAGAAAGCACGTG
GAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCCTTGTCGGTCA
AGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAGGCGGCAAAC
TTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGGCGATCCACAC
CTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATCCCGGTGAAGA
AGAACTGGCGATTGAACGAGATGTCTCGCGGAGTG
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Synonyms
Publications