jgi.p|Nanoce1779_2|630234, mRNA_4360 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630234
Unique NamemRNA_4360
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length851
Alignment locationscaffold_10:385366..386550 -

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Properties
Property NameValue
TranscriptId630320
TrackFilteredModels2
ProteinId630234
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:385366..386550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630234gene_4360Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630234mRNA_4360-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4360CDS_4360Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4360 ID=mRNA_4360|Name=jgi.p|Nanoce1779_2|630234|organism=Nannochloropsis oceanica|type=mRNA|length=851bp
ACAGGTATTTTAACACTTTATCGACACCTCGCACCATGTTTGTCGCCCGG
TCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAGGC
CTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCATA
GCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTAAG
AAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGCCT
CAAGAATGGCCCCCCCATTGTGACCATTACGTTTCTCCCCGCCAACAAGA
AAGTCCAAGCCGTGGCCGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCC
AAGATTCCCATCAAGTACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGA
GATCGATTTGAATGGGAAAAAGGTCAGGACATGTGTCGGCATTGTGCCCC
GTGGGGCCCGTAAGAATGAAGTGACAATCAAGGTGCTCAAGTAAGGAAGA
AGTGCAGCAGCAGCAGCAGCAGCAACACCAACGCTGCTGTTACTGCCGCT
GCTGCCATATCGAGATCTATCCATCCTTCCTCCACACGTGCATATAGAAA
AGACACAAGATATGAGAAGATTAGGGAAAAAAGTGCCTCCTATGAGTCCA
ATAGTCTTTGTATACTTCCCTCTTTTGAACCGTACACCAAATCCTTCCCT
GCCGTCCCTCCCCTCCCTCACTTTCGCTTGGCCACCCGCCTTGTACCCAC
CCTGTGGAAAAGATGGCGAAGCGGTTATGCCTGCATGCAGATGAAGATGA
GAATAGAAGAGAGAGCGGAGAAGGGAGAACAAGCAATCAAATGTCCTTGA
T
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protein sequence of jgi.p|Nanoce1779_2|630234

>mRNA_4360-protein ID=mRNA_4360-protein|Name=jgi.p|Nanoce1779_2|630234|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFVARSSLLCVVAVVLACVSQAFIIPAPAPVSAPSVRHSRSRMAPLQMGF
FDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKD
VALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIKV
LK*
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mRNA from alignment at scaffold_10:385366..386550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4360 ID=mRNA_4360|Name=jgi.p|Nanoce1779_2|630234|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_10:385366..386550- (Nannochloropsis oceanica)
ACAGGTATTTTAACACTTTATCGACACCTCGCACCATGTTTGTCGCCCGG
TCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAGGC
CTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCATA
GCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTAAG
AAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGCCT
CAAGAATGTACGTGCAAGTGAAAGGACAAGGTCGAGGTAGTGAGACGATG
ACGTCAGGCCTCTATGAGCGGAATAGACACTACCACGCAGCAATGCGCTC
TTATATTATCGAATGACATGCATCTAGGATCGATAATGCGGGAAATGGTT
AGTGTAACCAAGGCCTACAGGCCTCGTACCTTTGTGTAGCCTATACTCGT
GCCTTCTCCCCTCACACACCATCCCCTCTCCAAGCATGCACCCCACCCCA
TGGCCTTCATCATCTTCCCTCTGCACTCGCCTACACAACCACTCACGCCC
CCGCCTATCTTCCTTTTTTTTCTGTCCCTGCATGCACTCAGGGCCCCCCC
ATTGTGACCATTACGTTTCTCCCCGCCAACAAGAAAGTCCAAGCCGTGGC
CGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCCAAGATTCCCATCAAGT
ACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGAGATCGATTTGAATGGG
AAAAAGGTCAGGACATGTGTCGGCATTGTGCCCCGTGGGGCCCGTAAGAA
TGAAGTGACAATCAAGGTGCTCAAGTAAGGAAGAAGTGCAGCAGCAGCAG
CAGCAGCAACACCAACGCTGCTGTTACTGCCGCTGCTGCCATATCGAGAT
CTATCCATCCTTCCTCCACACGTGCATATAGAAAAGACACAAGATATGAG
AAGATTAGGGAAAAAAGTGCCTCCTATGAGTCCAATAGTCTTTGTATACT
TCCCTCTTTTGAACCGTACACCAAATCCTTCCCTGCCGTCCCTCCCCTCC
CTCACTTTCGCTTGGCCACCCGCCTTGTACCCACCCTGTGGAAAAGATGG
CGAAGCGGTTATGCCTGCATGCAGATGAAGATGAGAATAGAAGAGAGAGC
GGAGAAGGGAGAACAAGCAATCAAATGTCCTTGAT
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Coding sequence (CDS) from alignment at scaffold_10:385366..386550-

>mRNA_4360 ID=mRNA_4360|Name=jgi.p|Nanoce1779_2|630234|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_10:385366..386550- (Nannochloropsis oceanica)
GGCCCCCCCATTGTGACCATTACGTTTCTCCCCGCCAACAAGAAAGTCCA
AGCCGTGGCCGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCCAAGATTC
CCATCAAGTACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGAGATCGAT
TTGAATGGGAAAAAGGTCAGGACATGTGTCGGCATTGTGCCCCGTGGGGC
CCGTAAGAATGAAGTGACAATCAAGGTGCTCAAGTAAATGTTTGTCGCCC
GGTCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAG
GCCTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCA
TAGCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTA
AGAAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGC
CTCAAGAATGGCCCCCCCATTGTGACCATTACGTTTCTCCCCGCCAACAA
GAAAGTCCAAGCCGTGGCCGGGCAAAACTTGAAAGACGTCGCTCTTGCCG
CCAAGATTCCCATCAAGTACAACTGCAAAAAAGGGGAGTGCGGGACTTGC
GAGATCGATTTGAATGGGAAAAAGGTCAGGACATGTGTCGGCATTGTGCC
CCGTGGGGCCCGTAAGAATGAAGTGACAATCAAGGTGCTCAAGTAAATGT
TTGTCGCCCGGTCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGC
GTTTCCCAGGCCTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTC
GGTCCGCCATAGCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCG
ACTCCATTAAGAAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCC
AATGCCGGCCTCAAGAAT
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Synonyms
Publications