jgi.p|Nanoce1779_2|588847, mRNA_4359 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588847
Unique NamemRNA_4359
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1145
Alignment locationscaffold_10:383843..384987 +

Link to JBrowse

Properties
Property NameValue
TranscriptId588933
TrackFilteredModels2
ProteinId588847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:383843..384987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588847gene_4359Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588847mRNA_4359-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4359CDS_4359Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4359 ID=mRNA_4359|Name=jgi.p|Nanoce1779_2|588847|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
ACAGACACGGCTTAAACTATGTTATTTCGAGAACGACCAGCACACTTGCT
CCACTCCCAACCCAACTCCCCCGACCCCACCTCAGCTGAAGACCTCTCCA
TCATCTCCTCCCTTCCTCTCGCCCTTTTTCTCACCACCCTCTCTGGACTC
GCAACTGTCTTGGGCGCCCTCATCGTCTGCTTAGAGCCCAATGGCATGAC
GGGTCGTAGATTGGGACTGGCACAAGGAATGGCTGCGGGTTTCATGATCG
CTGTTACCCTCTTGGAGATAATACCAGAGGCCTTGGAGGGAATACAGGTG
TGGCAATGTATCTCCTTGGCAGGTATGGGGGCAGCGTCGATTTCCATGGT
GAAGCTTTTGTTGCCCGAACCGGATCTGAGTGCATTTTGGGAGGCAGATT
GGATTAAGGCGCGGAATGGGGGAAAAGGGCTTGAGATGGTAGAGAAGCGG
AGAGGAGGGAACGGCAGGAATAGGAACAACAGCAGCGGCAACAACGGCAG
CAACATCAATGAACAGCACTCTCGTCGGGAGCCTTCTTCAGACACTACTG
CAGCTGCTGCCACTGCTGACGAAGATGGTTTCTTCTCGCTCAACGACAGC
GGGACCACGGAGCCTTTTGCCTCCCTTCCCTCTTCCTCTCTAACCACTAC
CAGCCCCTCCTTCACCCATCTCGAACGACAGCGACGCAACTCCCTCCTTT
GGTCAGGCCTTCAAGTAGCCCTTTCTCTTTCTCTGCACAACTTTCCCGAG
GGCATTGCCACATTCGCCGCTTCCTTAAAGGGATTGAACTTAGGTCTACC
CCTCGCCATAAGCATCGCCCTTCACAATCTCCCCGAAGGCGCGGCATGTG
CCATACCCATTTATGTCGCCACGGGGAGTCGGAAAAAAGCCCTGCTTGTG
GCCTTACTCTCAGGACTGGCTGAGCCAGCTGGAGTGTTGTTTGTTGCCTT
TGTGGGACCCTCGTCCTTGACGCCTGCAGTGGTGGCGGGCTTGCTTTCTG
TGGTGGGGGGCGTGATGATTCGGTTGAGTGTTTTCGAACTGGCGCCCCAA
GCGGTGGAGTTCGCGTCGAAAAGGGAGGCGGTGTTTGCGGGAGGAGTCGG
CTTTTTGGTAATGAGTTTTGTTTTGGGGGTGATGCATGTGTGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|588847

>mRNA_4359-protein ID=mRNA_4359-protein|Name=jgi.p|Nanoce1779_2|588847|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLFRERPAHLLHSQPNSPDPTSAEDLSIISSLPLALFLTTLSGLATVLGA
LIVCLEPNGMTGRRLGLAQGMAAGFMIAVTLLEIIPEALEGIQVWQCISL
AGMGAASISMVKLLLPEPDLSAFWEADWIKARNGGKGLEMVEKRRGGNGR
NRNNSSGNNGSNINEQHSRREPSSDTTAAAATADEDGFFSLNDSGTTEPF
ASLPSSSLTTTSPSFTHLERQRRNSLLWSGLQVALSLSLHNFPEGIATFA
ASLKGLNLGLPLAISIALHNLPEGAACAIPIYVATGSRKKALLVALLSGL
AEPAGVLFVAFVGPSSLTPAVVAGLLSVVGGVMIRLSVFELAPQAVEFAS
KREAVFAGGVGFLVMSFVLGVMHV*
back to top

mRNA from alignment at scaffold_10:383843..384987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4359 ID=mRNA_4359|Name=jgi.p|Nanoce1779_2|588847|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at scaffold_10:383843..384987+ (Nannochloropsis oceanica)
ACAGACACGGCTTAAACTATGTTATTTCGAGAACGACCAGCACACTTGCT
CCACTCCCAACCCAACTCCCCCGACCCCACCTCAGCTGAAGACCTCTCCA
TCATCTCCTCCCTTCCTCTCGCCCTTTTTCTCACCACCCTCTCTGGACTC
GCAACTGTCTTGGGCGCCCTCATCGTCTGCTTAGAGCCCAATGGCATGAC
GGGTCGTAGATTGGGACTGGCACAAGGAATGGCTGCGGGTTTCATGATCG
CTGTTACCCTCTTGGAGATAATACCAGAGGCCTTGGAGGGAATACAGGTG
TGGCAATGTATCTCCTTGGCAGGTATGGGGGCAGCGTCGATTTCCATGGT
GAAGCTTTTGTTGCCCGAACCGGATCTGAGTGCATTTTGGGAGGCAGATT
GGATTAAGGCGCGGAATGGGGGAAAAGGGCTTGAGATGGTAGAGAAGCGG
AGAGGAGGGAACGGCAGGAATAGGAACAACAGCAGCGGCAACAACGGCAG
CAACATCAATGAACAGCACTCTCGTCGGGAGCCTTCTTCAGACACTACTG
CAGCTGCTGCCACTGCTGACGAAGATGGTTTCTTCTCGCTCAACGACAGC
GGGACCACGGAGCCTTTTGCCTCCCTTCCCTCTTCCTCTCTAACCACTAC
CAGCCCCTCCTTCACCCATCTCGAACGACAGCGACGCAACTCCCTCCTTT
GGTCAGGCCTTCAAGTAGCCCTTTCTCTTTCTCTGCACAACTTTCCCGAG
GGCATTGCCACATTCGCCGCTTCCTTAAAGGGATTGAACTTAGGTCTACC
CCTCGCCATAAGCATCGCCCTTCACAATCTCCCCGAAGGCGCGGCATGTG
CCATACCCATTTATGTCGCCACGGGGAGTCGGAAAAAAGCCCTGCTTGTG
GCCTTACTCTCAGGACTGGCTGAGCCAGCTGGAGTGTTGTTTGTTGCCTT
TGTGGGACCCTCGTCCTTGACGCCTGCAGTGGTGGCGGGCTTGCTTTCTG
TGGTGGGGGGCGTGATGATTCGGTTGAGTGTTTTCGAACTGGCGCCCCAA
GCGGTGGAGTTCGCGTCGAAAAGGGAGGCGGTGTTTGCGGGAGGAGTCGG
CTTTTTGGTAATGAGTTTTGTTTTGGGGGTGATGCATGTGTGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_10:383843..384987+

>mRNA_4359 ID=mRNA_4359|Name=jgi.p|Nanoce1779_2|588847|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_10:383843..384987+ (Nannochloropsis oceanica)
ATGTTATTTCGAGAACGACCAGCACACTTGCTCCACTCCCAACCCAACTC
CCCCGACCCCACCTCAGCTGAAGACCTCTCCATCATCTCCTCCCTTCCTC
TCGCCCTTTTTCTCACCACCCTCTCTGGACTCGCAACTGTCTTGGGCGCC
CTCATCGTCTGCTTAGAGCCCAATGGCATGACGGGTCGTAGATTGGGACT
GGCACAAGGAATGGCTGCGGGTTTCATGATCGCTGTTACCCTCTTGGAGA
TAATACCAGAGGCCTTGGAGGGAATACAGGTGTGGCAATGTATCTCCTTG
GCAGGTATGGGGGCAGCGTCGATTTCCATGGTGAAGCTTTTGTTGCCCGA
ACCGGATCTGAGTGCATTTTGGGAGGCAGATTGGATTAAGGCGCGGAATG
GGGGAAAAGGGCTTGAGATGGTAGAGAAGCGGAGAGGAGGGAACGGCAGG
AATAGGAACAACAGCAGCGGCAACAACGGCAGCAACATCAATGAACAGCA
CTCTCGTCGGGAGCCTTCTTCAGACACTACTGCAGCTGCTGCCACTGCTG
ACGAAGATGGTTTCTTCTCGCTCAACGACAGCGGGACCACGGAGCCTTTT
GCCTCCCTTCCCTCTTCCTCTCTAACCACTACCAGCCCCTCCTTCACCCA
TCTCGAACGACAGCGACGCAACTCCCTCCTTTGGTCAGGCCTTCAAGTAG
CCCTTTCTCTTTCTCTGCACAACTTTCCCGAGGGCATTGCCACATTCGCC
GCTTCCTTAAAGGGATTGAACTTAGGTCTACCCCTCGCCATAAGCATCGC
CCTTCACAATCTCCCCGAAGGCGCGGCATGTGCCATACCCATTTATGTCG
CCACGGGGAGTCGGAAAAAAGCCCTGCTTGTGGCCTTACTCTCAGGACTG
GCTGAGCCAGCTGGAGTGTTGTTTGTTGCCTTTGTGGGACCCTCGTCCTT
GACGCCTGCAGTGGTGGCGGGCTTGCTTTCTGTGGTGGGGGGCGTGATGA
TTCGGTTGAGTGTTTTCGAACTGGCGCCCCAAGCGGTGGAGTTCGCGTCG
AAAAGGGAGGCGGTGTTTGCGGGAGGAGTCGGCTTTTTGGTAATGAGTTT
TGTTTTGGGGGTGATGCATGTGTGA
back to top
Synonyms
Publications