Properties
| Property Name | Value |
|---|
| TranscriptId | 588929 |
| Track | FilteredModels2 |
| ProteinId | 588843 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:380758..383128 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4358 ID=mRNA_4358|Name=jgi.p|Nanoce1779_2|588843|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp
AGACACAAGCATCATCATGCGAGCCACCAAGTCGCTGCTGCCGCTGCTGC
TGCTCCCCTTGCTGCTGCTGGTATTCGGTGCTGCTTCGTCTGCCTTCCAT
CCCTCTGCGCCGACGCAAACCTCGGAACACTACAAGAACGAAGGTCGCAT
CCGCCTCGAGCCTGATGTGCCTGAACACGCTTTCGGTCGAGCCCGGCACT
TTGTTCGTGAGTGCCGTGTCACCCCCACGGACATGCTGCGTCTGCAAATC
GTCCTTCGGCACGATCCTGCGGCGGTGGCGCTATTGGAAGGCACGCTCCT
TGCCGTTTCTGATCCGCGGAACACGCGCTATGGACAGTACTTGAGCATCA
ACGACATCACAGACATGGTGGGCCCTGATCCTTCTCATGCAGAGGCTGTG
CGCGCTTTTTTGTTGGCCAACGGTGTCCCTCCTGTTCACATAGAAGTGAA
CAAGAACCGAGACATCATCACAGTGCGACTCCCCGCCATGCTTGCAGAGG
ACATGTTTGAAACAATGCTGTATCGCTTCCGACACACGGCCAAGGTGGAG
GCCTCCTTCATCCGGGCTATCAATTCTTACAGTCTTCCTGCGTCCATTGC
TCCGCTGGTTGCCTTTGTGAGTGAGCTGATTCGCTTTCCCGCCATCCGCG
ATCTGCCTTTTGTGCCCGTCCCCCACGCTGCTACTGCTTCATCTTTTTCT
TCCGGCTCCAAATCTGACGACTCCCCCTCAGATGCAGCATTCCAAGCCTG
CGGCCATGAATGCGCTGGATACATCACGCCACAAGTGCTCTCCGAGAGAT
ATAATCTCCCCGCCTCCTTGGCAGATCCATGCGCGAGCAACAACTCGATT
GCGCTGGCGGAGTTCCAGTTCCAATATTACGATCGGAGAGATTTGTTTAT
TTTCGCGAATACCTGTGGGGTGGACTCGGTATCGGTGGAAAAAAATTACG
CGCATAACGCCGCGATTGTTTGCACGAGAGGAGGAGGATGCATTGAAAGT
TTACTGGATATTGAATGGGCGAATGTGGCGGCGGGTGGAGGTGCCATTCC
TCTTTCCGTTTACTACTCAATGCAATACAGCATTTTGGACTGGGTGACGG
CCGTGAATGACAATGACGACGCGGAGCTTGTGCATTCCGTGTCATATGGC
AATGACGAGCTGCAACAAACTTCGACTGAATACATGTTAAGTGTGAATAC
CGAGTTCATGAAAGCAGGTGCTCGGGGAATATCTATATTTATTGCCTCGG
GCGACCAAGGCGTGTATGGAAGAGAGGGGCCGGGGAATAGCATTTTCCAT
CCTGATTTCCCTGCCTCTTCTCCCTGGGTGACAAGCGTGGGAGGGACAGA
TTTCGTAACGCCGTCGGTAGTGGGGGAGGAAATGGCGTGGGAGGGTTCGG
GCGGCGGTTTTAGCAATACCTTCGGCACTGCCTCTTGGCAAGCTGCTGCC
GTTGCGCAATACAAAATGATCGCCGCTGAAACCTTGCCTCCCTCGTTTAT
GTGGAACGCCACTGGAAGGGGGTATCCGGACTTGAGTTGTTTAGGGGGGA
GCGGGAATGCCTACTGCGTGAGTGCTGAGGTAGGGTCCCTGGCAGGTGTG
TGGGGAACAAGTGCATCCACACCTGTGGTGGCTGGGATGTTTGCGCAGTT
GAATAATGTCAGATTACATGCCGGGTTGCCTCCGATGGGGTTTGTCAATC
CATTCATTTATCAGAATATGGATTGCTTCTTCGATGTTGTCAAGGGGGTG
AATGACGGGGGCTTTAATTTTGGCTTTACGGCTGTAGAAGGGTGGGATCC
AGCGACGGGTGTAGGGACGCCTGATTATGCAAAGCTTAAGGAAAGGGTAT
TGATGGTTTAGGTAGGAGGTAGAGAGAAGGAGGGAAGAAGGGGTGTAAAG
AAAGAGAGGATTAGCTTTGAACTTCTGAGTGCTCGATAGGGATTGTGGCA
GTGGAGGGTGAGACAGAGGCTGGAAGAAAGGGAAAGGAACGGTGTTTCTA
TGCAAGTGCTCGAGAAGACATAAGTATGTCATTTTGGTCAGGAGGGGACG
GGACCGCCGGCACATTTGTATAAATAAAGATGATGCGCGTGCGCACCGCT
GTTTTGTCGTAAAGGCTGCAGCGATGCCGGTCAGGTAGATAGAAACATAC
AGAGGAAAACAAATAGATCAGAACGAGGAAAGAGAACGAGTGAGAAAGAA
ATTGAAAAAGAAGGAAATAAAAATATTTTTTTTAAAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|588843 >mRNA_4358-protein ID=mRNA_4358-protein|Name=jgi.p|Nanoce1779_2|588843|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MRATKSLLPLLLLPLLLLVFGAASSAFHPSAPTQTSEHYKNEGRIRLEPD
VPEHAFGRARHFVRECRVTPTDMLRLQIVLRHDPAAVALLEGTLLAVSDP
RNTRYGQYLSINDITDMVGPDPSHAEAVRAFLLANGVPPVHIEVNKNRDI
ITVRLPAMLAEDMFETMLYRFRHTAKVEASFIRAINSYSLPASIAPLVAF
VSELIRFPAIRDLPFVPVPHAATASSFSSGSKSDDSPSDAAFQACGHECA
GYITPQVLSERYNLPASLADPCASNNSIALAEFQFQYYDRRDLFIFANTC
GVDSVSVEKNYAHNAAIVCTRGGGCIESLLDIEWANVAAGGGAIPLSVYY
SMQYSILDWVTAVNDNDDAELVHSVSYGNDELQQTSTEYMLSVNTEFMKA
GARGISIFIASGDQGVYGREGPGNSIFHPDFPASSPWVTSVGGTDFVTPS
VVGEEMAWEGSGGGFSNTFGTASWQAAAVAQYKMIAAETLPPSFMWNATG
RGYPDLSCLGGSGNAYCVSAEVGSLAGVWGTSASTPVVAGMFAQLNNVRL
HAGLPPMGFVNPFIYQNMDCFFDVVKGVNDGGFNFGFTAVEGWDPATGVG
TPDYAKLKERVLMV* back to topmRNA from alignment at scaffold_10:380758..383128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4358 ID=mRNA_4358|Name=jgi.p|Nanoce1779_2|588843|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp|location=Sequence derived from alignment at scaffold_10:380758..383128- (Nannochloropsis oceanica)
AGACACAAGCATCATCATGCGAGCCACCAAGTCGCTGCTGCCGCTGCTGC
TGCTCCCCTTGCTGCTGCTGGTATTCGGTGCTGCTTCGTCTGCCTTCCAT
CCCTCTGCGCCGACGCAAACCTCGGAACACTACAAGAACGAAGGTCGCAT
CCGCCTCGAGCCTGATGTGCCTGAACACGCTTTCGGTCGAGCCCGGCACT
TTGTTCGTGAGTGCCGTGTCACCCCCACGGACATGCTGCGTCTGCAAATC
GTCCTTCGGCACGATCCTGCGGCGGTGGCGCTATTGGAAGGCACGCTCCT
TGCCGTTTCTGATCCGCGGAACACGCGCTATGGACAGTACTTGAGCATCA
ACGACATCACAGACATGGTGGGCCCTGATCCTTCTCATGCAGAGGCTGTG
CGCGCTTTTTTGTTGGCCAACGGTGTCCCTCCTGTTCACATAGAAGTGAA
CAAGAACCGAGACATCATCACAGTGCGACTCCCCGCCATGCTTGCAGAGG
ACATGTTTGAAACAATGCTGTATCGCTTCCGACACACGGCCAAGGTGGAG
GCCTCCTTCATCCGGGCTATCAATTCTTACAGTCTTCCTGCGTCCATTGC
TCCGCTGGTTGCCTTTGTGAGTGAGCTGATTCGCTTTCCCGCCATCCGCG
ATCTGCCTTTTGTGCCCGTCCCCCACGCTGCTACTGCTTCATCTTTTTCT
TCCGGCTCCAAATCTGACGACTCCCCCTCAGATGCAGCATTCCAAGCCTG
CGGCCATGAATGCGCTGGATACATCACGCCACAAGTGCTCTCCGAGAGAT
ATAATCTCCCCGCCTCCTTGGCAGATCCATGCGCGAGCAACAACTCGATT
GCGCTGGCGGAGTTCCAGTTCCAATATTACGATCGGAGAGATTTGTTTAT
TTTCGCGAATACCTGTGGGGTGGACTCGGTATCGGTGGAAAAAAATTACG
CGCATAACGCCGCGATTGTTTGCACGAGAGGAGGAGGATGCATTGAAAGT
TTACTGGATATTGAATGGGCGAATGTGGCGGCGGGTGGAGGTGCCATTCC
TCTTTCCGTTTACTACTCAATGCAATACAGCATTTTGGACTGGGTGACGG
CCGTGAATGACAATGACGACGCGGAGCTTGTGCATTCCGTGTCATATGGC
AATGACGAGCTGCAACAAACTTCGACTGAATACATGTTAAGTGTGAATAC
CGAGTTCATGAAAGCAGGTGCTCGGGGAATATCTATATTTATTGCCTCGG
GCGACCAAGGCGTGTATGGAAGAGAGGGGCCGGGGAATAGCATTTTCCAT
CCTGATTTCCCTGCCTCTTCTCCCTGGGTGACAAGCGTGGGAGGGACAGA
TTTCGTAACGCCGTCGGTAGTGGGGGAGGAAATGGCGTGGTAAGTTTCAT
TTGGGTTTGGGGGGAGGATGGAAGGAGAAGGCGCGTGTTGGTGCTTTCGA
TTTGTTCGACTCGGGTCAGGTCTCACCCATTTTTCTTCCTGTTCCTTGGT
TCCTATCACATGCGAGACAGGGAGGGTTCGGGCGGCGGTTTTAGCAATAC
CTTCGGCACTGCCTCTTGGCAAGCTGCTGCCGTTGCGCAATACAAAATGA
TCGCCGCTGAAACCTTGCCTCCCTCGTTTATGTGGAACGCCACTGGAAGG
GGGTATCCGGACTTGAGTTGTTTAGGGGGGAGCGGGAATGCCTACTGCGT
GAGTGCTGAGGTAGGGTCCCTGGCAGGTGTGTGGGGAACAAGTGCATCCA
CACCTGTGGTGGCTGGGATGTTTGCGCAGTTGAATAATGTCAGATTACAT
GCCGGGTTGCCTCCGATGGGGTTTGTCAATCCATTCATTTATCAGAATAT
GGATTGCTTCTTCGATGTTGTCAAGGGGGTGAATGACGGGGGCTTTAATT
TTGGCTTTACGGCTGTAGAAGGGTGGGATCCAGCGACGGGTGTAGGGACG
CCTGATTATGCAAAGCTTAAGGAAAGGGTATTGATGGTTTAGGTAGGAGG
TAGAGAGAAGGAGGGAAGAAGGGGTGTAAAGAAAGAGAGGATTAGCTTTG
AACTTCTGAGTGCTCGATAGGGATTGTGGCAGTGGAGGGTGAGACAGAGG
CTGGAAGAAAGGGAAAGGAACGGTGTTTCTATGCAAGTGCTCGAGAAGAC
ATAAGTATGTCATTTTGGTCAGGAGGGGACGGGACCGCCGGCACATTTGT
ATAAATAAAGATGATGCGCGTGCGCACCGCTGTTTTGTCGTAAAGGCTGC
AGCGATGCCGGTCAGGTAGATAGAAACATACAGAGGAAAACAAATAGATC
AGAACGAGGAAAGAGAACGAGTGAGAAAGAAATTGAAAAAGAAGGAAATA
AAAATATTTTTTTTAAAAAAA back to topCoding sequence (CDS) from alignment at scaffold_10:380758..383128- >mRNA_4358 ID=mRNA_4358|Name=jgi.p|Nanoce1779_2|588843|organism=Nannochloropsis oceanica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_10:380758..383128- (Nannochloropsis oceanica)
GGAGGGTTCGGGCGGCGGTTTTAGCAATACCTTCGGCACTGCCTCTTGGC
AAGCTGCTGCCGTTGCGCAATACAAAATGATCGCCGCTGAAACCTTGCCT
CCCTCGTTTATGTGGAACGCCACTGGAAGGGGGTATCCGGACTTGAGTTG
TTTAGGGGGGAGCGGGAATGCCTACTGCGTGAGTGCTGAGGTAGGGTCCC
TGGCAGGTGTGTGGGGAACAAGTGCATCCACACCTGTGGTGGCTGGGATG
TTTGCGCAGTTGAATAATGTCAGATTACATGCCGGGTTGCCTCCGATGGG
GTTTGTCAATCCATTCATTTATCAGAATATGGATTGCTTCTTCGATGTTG
TCAAGGGGGTGAATGACGGGGGCTTTAATTTTGGCTTTACGGCTGTAGAA
GGGTGGGATCCAGCGACGGGTGTAGGGACGCCTGATTATGCAAAGCTTAA
GGAAAGGGTATTGATGGTTTAGATGCGAGCCACCAAGTCGCTGCTGCCGC
TGCTGCTGCTCCCCTTGCTGCTGCTGGTATTCGGTGCTGCTTCGTCTGCC
TTCCATCCCTCTGCGCCGACGCAAACCTCGGAACACTACAAGAACGAAGG
TCGCATCCGCCTCGAGCCTGATGTGCCTGAACACGCTTTCGGTCGAGCCC
GGCACTTTGTTCGTGAGTGCCGTGTCACCCCCACGGACATGCTGCGTCTG
CAAATCGTCCTTCGGCACGATCCTGCGGCGGTGGCGCTATTGGAAGGCAC
GCTCCTTGCCGTTTCTGATCCGCGGAACACGCGCTATGGACAGTACTTGA
GCATCAACGACATCACAGACATGGTGGGCCCTGATCCTTCTCATGCAGAG
GCTGTGCGCGCTTTTTTGTTGGCCAACGGTGTCCCTCCTGTTCACATAGA
AGTGAACAAGAACCGAGACATCATCACAGTGCGACTCCCCGCCATGCTTG
CAGAGGACATGTTTGAAACAATGCTGTATCGCTTCCGACACACGGCCAAG
GTGGAGGCCTCCTTCATCCGGGCTATCAATTCTTACAGTCTTCCTGCGTC
CATTGCTCCGCTGGTTGCCTTTGTGAGTGAGCTGATTCGCTTTCCCGCCA
TCCGCGATCTGCCTTTTGTGCCCGTCCCCCACGCTGCTACTGCTTCATCT
TTTTCTTCCGGCTCCAAATCTGACGACTCCCCCTCAGATGCAGCATTCCA
AGCCTGCGGCCATGAATGCGCTGGATACATCACGCCACAAGTGCTCTCCG
AGAGATATAATCTCCCCGCCTCCTTGGCAGATCCATGCGCGAGCAACAAC
TCGATTGCGCTGGCGGAGTTCCAGTTCCAATATTACGATCGGAGAGATTT
GTTTATTTTCGCGAATACCTGTGGGGTGGACTCGGTATCGGTGGAAAAAA
ATTACGCGCATAACGCCGCGATTGTTTGCACGAGAGGAGGAGGATGCATT
GAAAGTTTACTGGATATTGAATGGGCGAATGTGGCGGCGGGTGGAGGTGC
CATTCCTCTTTCCGTTTACTACTCAATGCAATACAGCATTTTGGACTGGG
TGACGGCCGTGAATGACAATGACGACGCGGAGCTTGTGCATTCCGTGTCA
TATGGCAATGACGAGCTGCAACAAACTTCGACTGAATACATGTTAAGTGT
GAATACCGAGTTCATGAAAGCAGGTGCTCGGGGAATATCTATATTTATTG
CCTCGGGCGACCAAGGCGTGTATGGAAGAGAGGGGCCGGGGAATAGCATT
TTCCATCCTGATTTCCCTGCCTCTTCTCCCTGGGTGACAAGCGTGGGAGG
GACAGATTTCGTAACGCCGTCGGTAGTGGGGGAGGAAATGGCGTGGGAGG
GTTCGGGCGGCGGTTTTAGCAATACCTTCGGCACTGCCTCTTGGCAAGCT
GCTGCCGTTGCGCAATACAAAATGATCGCCGCTGAAACCTTGCCTCCCTC
GTTTATGTGGAACGCCACTGGAAGGGGGTATCCGGACTTGAGTTGTTTAG
GGGGGAGCGGGAATGCCTACTGCGTGAGTGCTGAGGTAGGGTCCCTGGCA
GGTGTGTGGGGAACAAGTGCATCCACACCTGTGGTGGCTGGGATGTTTGC
GCAGTTGAATAATGTCAGATTACATGCCGGGTTGCCTCCGATGGGGTTTG
TCAATCCATTCATTTATCAGAATATGGATTGCTTCTTCGATGTTGTCAAG
GGGGTGAATGACGGGGGCTTTAATTTTGGCTTTACGGCTGTAGAAGGGTG
GGATCCAGCGACGGGTGTAGGGACGCCTGATTATGCAAAGCTTAAGGAAA
GGGTATTGATGGTTTAGATGCGAGCCACCAAGTCGCTGCTGCCGCTGCTG
CTGCTCCCCTTGCTGCTGCTGGTATTCGGTGCTGCTTCGTCTGCCTTCCA
TCCCTCTGCGCCGACGCAAACCTCGGAACACTACAAGAACGAAGGTCGCA
TCCGCCTCGAGCCTGATGTGCCTGAACACGCTTTCGGTCGAGCCCGGCAC
TTTGTTCGTGAGTGCCGTGTCACCCCCACGGACATGCTGCGTCTGCAAAT
CGTCCTTCGGCACGATCCTGCGGCGGTGGCGCTATTGGAAGGCACGCTCC
TTGCCGTTTCTGATCCGCGGAACACGCGCTATGGACAGTACTTGAGCATC
AACGACATCACAGACATGGTGGGCCCTGATCCTTCTCATGCAGAGGCTGT
GCGCGCTTTTTTGTTGGCCAACGGTGTCCCTCCTGTTCACATAGAAGTGA
ACAAGAACCGAGACATCATCACAGTGCGACTCCCCGCCATGCTTGCAGAG
GACATGTTTGAAACAATGCTGTATCGCTTCCGACACACGGCCAAGGTGGA
GGCCTCCTTCATCCGGGCTATCAATTCTTACAGTCTTCCTGCGTCCATTG
CTCCGCTGGTTGCCTTTGTGAGTGAGCTGATTCGCTTTCCCGCCATCCGC
GATCTGCCTTTTGTGCCCGTCCCCCACGCTGCTACTGCTTCATCTTTTTC
TTCCGGCTCCAAATCTGACGACTCCCCCTCAGATGCAGCATTCCAAGCCT
GCGGCCATGAATGCGCTGGATACATCACGCCACAAGTGCTCTCCGAGAGA
TATAATCTCCCCGCCTCCTTGGCAGATCCATGCGCGAGCAACAACTCGAT
TGCGCTGGCGGAGTTCCAGTTCCAATATTACGATCGGAGAGATTTGTTTA
TTTTCGCGAATACCTGTGGGGTGGACTCGGTATCGGTGGAAAAAAATTAC
GCGCATAACGCCGCGATTGTTTGCACGAGAGGAGGAGGATGCATTGAAAG
TTTACTGGATATTGAATGGGCGAATGTGGCGGCGGGTGGAGGTGCCATTC
CTCTTTCCGTTTACTACTCAATGCAATACAGCATTTTGGACTGGGTGACG
GCCGTGAATGACAATGACGACGCGGAGCTTGTGCATTCCGTGTCATATGG
CAATGACGAGCTGCAACAAACTTCGACTGAATACATGTTAAGTGTGAATA
CCGAGTTCATGAAAGCAGGTGCTCGGGGAATATCTATATTTATTGCCTCG
GGCGACCAAGGCGTGTATGGAAGAGAGGGGCCGGGGAATAGCATTTTCCA
TCCTGATTTCCCTGCCTCTTCTCCCTGGGTGACAAGCGTGGGAGGGACAG
ATTTCGTAACGCCGTCGGTAGTGGGGGAGGAAATGGCGTG back to top
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